Clone Sequence Records
BS17280.complete Sequence
389 bp assembled on 2010-02-09
GenBank Submission: KX801591
> BS17280.complete
GAAGTTATCAGTCGACATGGCTGATAGTGCGCTCATCGAAAACGAGTTGG
TTGCCCGGCCCGATAAGCTGTACTGCCTGAATGCGCCGGAAAGCCGTTTC
GACGAGAACCATATCAAGGATGGCCAACCCACGACCATGGCTAATCTGGA
GCGCTGCAACTGGAGGCGGGTGCACGTGGACTGCCAGCTAAAGATGCCGC
TGCGTGCCGAGATTCCGGTAGGCCATGCTAGCGCCTACGGTCCAGTTCTG
TGCGGCACCATCCTGCTAGGTTGGTCTCTGGCCCTGTGGACCATCATCCA
CTCGATGGCCAACACGCGACGCATCAATCAGCGCCTCAACGAGCAGCGAC
TTCTGCAGCAAAAAGTCAAGTAAAAGCTTTCTAGACCAT
BS17280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-RC | 732 | CG30381-PC | 376..732 | 17..373 | 1785 | 100 | Plus |
CG30381-RB | 714 | CG30381-PB | 358..714 | 17..373 | 1785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-RC | 1195 | CG30381-RC | 516..872 | 17..373 | 1785 | 100 | Plus |
CG30381-RB | 1177 | CG30381-RB | 498..854 | 17..373 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7929981..7930337 | 373..17 | 1785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:58:36 has no hits.
BS17280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:14 Download gff for
BS17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 356..714 | 13..373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:38 Download gff for
BS17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 358..712 | 17..371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:48 Download gff for
BS17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 498..852 | 17..371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:14 Download gff for
BS17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 356..717 | 13..376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:56 Download gff for
BS17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 498..852 | 17..371 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:56 Download gff for
BS17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7929983..7930337 | 17..371 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:48 Download gff for
BS17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3817488..3817842 | 17..371 | 100 | | Minus |
BS17280.3prime Sequence
387 bp (387 high quality bases) assembled on 2007-05-15
> BS17280.3prime
ATGGTCTAGAAAGCTTTTACTTGACTTTTTGCTGCAGAAGTCGCTGCTCG
TTGAGGCGCTGATTGATGCGTCGCGTGTTGGCCATCGAGTGGATGATGGT
CCACAGGGCCAGAGACCAACCTAGCAGGATGGTGCCGCACAGAACTGGAC
CGTAGGCGCTAGCATGGCCTACCGGAATCTCGGCACGCAGCGGCATCTTT
AGCTGGCAGTCCACGTGCACCCGCCTCCAGTTGCAGCGCTCCAGATTAGC
CATGGTCGTGGGTTGGCCATCCTTGATATGGTTCTCGTCGAAACGGCTTT
CCGGCGCATTCAGGCAGTACAGCTTATCGGGCCGGGCAACCAACTCGTTT
TCGATGAGCGCACTATCAGCCATGTCGACTGATAACT
BS17280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-PA | 357 | CG30381-RA | 1..357 | 373..17 | 1785 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-RC | 1195 | CG30381-RC | 516..872 | 373..17 | 1785 | 100 | Minus |
CG30381-RB | 1177 | CG30381-RB | 498..854 | 373..17 | 1785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7929981..7930337 | 17..373 | 1785 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:16:32 has no hits.
BS17280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:19:41 Download gff for
BS17280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-PA | 1..357 | 17..373 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:52 Download gff for
BS17280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 496..857 | 14..377 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:27 Download gff for
BS17280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 496..857 | 14..377 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:27 Download gff for
BS17280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7929978..7930339 | 14..377 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:52 Download gff for
BS17280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3817483..3817844 | 14..377 | 99 | | Plus |
BS17280.5prime Sequence
387 bp (387 high quality bases) assembled on 2007-05-15
> BS17280.5prime
GAAGTTATCAGTCGACATGGCTGATAGTGCGCTCATCGAAAACGAGTTGG
TTGCCCGGCCCGATAAGCTGTACTGCCTGAATGCGCCGGAAAGCCGTTTC
GACGAGAACCATATCAAGGATGGCCAACCCACGACCATGGCTAATCTGGA
GCGCTGCAACTGGAGGCGGGTGCACGTGGACTGCCAGCTAAAGATGCCGC
TGCGTGCCGAGATTCCGGTAGGCCATGCTAGCGCCTACGGTCCAGTTCTG
TGCGGCACCATCCTGCTAGGTTGGTCTCTGGCCCTGTGGACCATCATCCA
CTCGATGGCCAACACGCGACGCATCAATCAGCGCCTCAACGAGCAGCGAC
TTCTGCAGCAAAAAGTCAAGTAAAAGCTTTCTAGACC
BS17280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-PA | 357 | CG30381-RA | 1..357 | 17..373 | 1785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-RC | 1195 | CG30381-RC | 516..872 | 17..373 | 1785 | 100 | Plus |
CG30381-RB | 1177 | CG30381-RB | 498..854 | 17..373 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7929981..7930337 | 373..17 | 1785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:10:31 has no hits.
BS17280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:01 Download gff for
BS17280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-PA | 1..357 | 17..373 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:10 Download gff for
BS17280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 496..857 | 13..376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:15 Download gff for
BS17280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 496..857 | 13..376 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:15 Download gff for
BS17280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7929978..7930339 | 13..376 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:10 Download gff for
BS17280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3817483..3817844 | 13..376 | 99 | | Minus |
BS17280.pep Sequence
Translation from 16 to 372
> BS17280.pep
MADSALIENELVARPDKLYCLNAPESRFDENHIKDGQPTTMANLERCNWR
RVHVDCQLKMPLRAEIPVGHASAYGPVLCGTILLGWSLALWTIIHSMANT
RRINQRLNEQRLLQQKVK*
BS17280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-PB | 237 | CG30381-PB | 120..237 | 1..118 | 628 | 100 | Plus |
CG30381-PC | 243 | CG30381-PC | 126..243 | 1..118 | 628 | 100 | Plus |