Clone BS17280 Report

Search the DGRC for BS17280

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG30381-RA
Protein status:BS17280.pep: Imported from assembly
Sequenced Size:389

Clone Sequence Records

BS17280.complete Sequence

389 bp assembled on 2010-02-09

GenBank Submission: KX801591

> BS17280.complete
GAAGTTATCAGTCGACATGGCTGATAGTGCGCTCATCGAAAACGAGTTGG
TTGCCCGGCCCGATAAGCTGTACTGCCTGAATGCGCCGGAAAGCCGTTTC
GACGAGAACCATATCAAGGATGGCCAACCCACGACCATGGCTAATCTGGA
GCGCTGCAACTGGAGGCGGGTGCACGTGGACTGCCAGCTAAAGATGCCGC
TGCGTGCCGAGATTCCGGTAGGCCATGCTAGCGCCTACGGTCCAGTTCTG
TGCGGCACCATCCTGCTAGGTTGGTCTCTGGCCCTGTGGACCATCATCCA
CTCGATGGCCAACACGCGACGCATCAATCAGCGCCTCAACGAGCAGCGAC
TTCTGCAGCAAAAAGTCAAGTAAAAGCTTTCTAGACCAT

BS17280.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-RC 732 CG30381-PC 376..732 17..373 1785 100 Plus
CG30381-RB 714 CG30381-PB 358..714 17..373 1785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-RC 1195 CG30381-RC 516..872 17..373 1785 100 Plus
CG30381-RB 1177 CG30381-RB 498..854 17..373 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7929981..7930337 373..17 1785 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:58:36 has no hits.

BS17280.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:14 Download gff for BS17280.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 356..714 13..373 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:38 Download gff for BS17280.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 358..712 17..371 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:48 Download gff for BS17280.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 498..852 17..371 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:14 Download gff for BS17280.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 356..717 13..376 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:56 Download gff for BS17280.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 498..852 17..371 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:56 Download gff for BS17280.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7929983..7930337 17..371 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:48 Download gff for BS17280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3817488..3817842 17..371 100   Minus

BS17280.3prime Sequence

387 bp (387 high quality bases) assembled on 2007-05-15

> BS17280.3prime
ATGGTCTAGAAAGCTTTTACTTGACTTTTTGCTGCAGAAGTCGCTGCTCG
TTGAGGCGCTGATTGATGCGTCGCGTGTTGGCCATCGAGTGGATGATGGT
CCACAGGGCCAGAGACCAACCTAGCAGGATGGTGCCGCACAGAACTGGAC
CGTAGGCGCTAGCATGGCCTACCGGAATCTCGGCACGCAGCGGCATCTTT
AGCTGGCAGTCCACGTGCACCCGCCTCCAGTTGCAGCGCTCCAGATTAGC
CATGGTCGTGGGTTGGCCATCCTTGATATGGTTCTCGTCGAAACGGCTTT
CCGGCGCATTCAGGCAGTACAGCTTATCGGGCCGGGCAACCAACTCGTTT
TCGATGAGCGCACTATCAGCCATGTCGACTGATAACT

BS17280.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-PA 357 CG30381-RA 1..357 373..17 1785 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-RC 1195 CG30381-RC 516..872 373..17 1785 100 Minus
CG30381-RB 1177 CG30381-RB 498..854 373..17 1785 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7929981..7930337 17..373 1785 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:16:32 has no hits.

BS17280.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:19:41 Download gff for BS17280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30381-PA 1..357 17..373 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:52 Download gff for BS17280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 496..857 14..377 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:27 Download gff for BS17280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 496..857 14..377 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:27 Download gff for BS17280.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7929978..7930339 14..377 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:52 Download gff for BS17280.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3817483..3817844 14..377 99   Plus

BS17280.5prime Sequence

387 bp (387 high quality bases) assembled on 2007-05-15

> BS17280.5prime
GAAGTTATCAGTCGACATGGCTGATAGTGCGCTCATCGAAAACGAGTTGG
TTGCCCGGCCCGATAAGCTGTACTGCCTGAATGCGCCGGAAAGCCGTTTC
GACGAGAACCATATCAAGGATGGCCAACCCACGACCATGGCTAATCTGGA
GCGCTGCAACTGGAGGCGGGTGCACGTGGACTGCCAGCTAAAGATGCCGC
TGCGTGCCGAGATTCCGGTAGGCCATGCTAGCGCCTACGGTCCAGTTCTG
TGCGGCACCATCCTGCTAGGTTGGTCTCTGGCCCTGTGGACCATCATCCA
CTCGATGGCCAACACGCGACGCATCAATCAGCGCCTCAACGAGCAGCGAC
TTCTGCAGCAAAAAGTCAAGTAAAAGCTTTCTAGACC

BS17280.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-PA 357 CG30381-RA 1..357 17..373 1785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-RC 1195 CG30381-RC 516..872 17..373 1785 100 Plus
CG30381-RB 1177 CG30381-RB 498..854 17..373 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7929981..7930337 373..17 1785 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:10:31 has no hits.

BS17280.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:01 Download gff for BS17280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30381-PA 1..357 17..373 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:10 Download gff for BS17280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 496..857 13..376 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:15 Download gff for BS17280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 496..857 13..376 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:15 Download gff for BS17280.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7929978..7930339 13..376 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:10 Download gff for BS17280.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3817483..3817844 13..376 99   Minus

BS17280.pep Sequence

Translation from 16 to 372

> BS17280.pep
MADSALIENELVARPDKLYCLNAPESRFDENHIKDGQPTTMANLERCNWR
RVHVDCQLKMPLRAEIPVGHASAYGPVLCGTILLGWSLALWTIIHSMANT
RRINQRLNEQRLLQQKVK*

BS17280.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-PB 237 CG30381-PB 120..237 1..118 628 100 Plus
CG30381-PC 243 CG30381-PC 126..243 1..118 628 100 Plus