Clone BS17282 Report

Search the DGRC for BS17282

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG14684-RA
Protein status:BS17282.pep: full length peptide match
Sequenced Size:413

Clone Sequence Records

BS17282.complete Sequence

413 bp assembled on 2010-02-09

GenBank Submission: KX801853

> BS17282.complete
GAAGTTATCAGTCGACATGTTCCGCCGCACTAATGCCGATCCGGTCATAC
GGCAATTTATTCTGCGCACTGCAGTCCTCAATTATCTTGGCAAGAGTCTG
CGAGAGCAGTATAATGAATATTGCCTTTTGAGAACCCAGCACGAAAATAT
TAGGCTGAAGACTGCGAGTGATCAAGAGCTTGAGGACCTGCCGACTCTTT
CCGAGCTATTTGAGATGCAACAGTTGAAGACGGCTGCCACCCATCGTCTG
CTGATGCGGGAGTACCAAGAATTGCTTGCCTACATGATGGACAAGAGTGA
TTTGTGGGACAGTCAGGAGTACTTCAAGGCCAAGTCTGCGCTTGGGGCGG
CCATCCACAATCTACGGGTTTGTGCACCCACCAAACCAATGGACTAAAAG
CTTTCTAGACCAT

BS17282.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-RA 381 CG14684-PA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-RA 487 CG14684-RA 29..412 16..399 1920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10707002..10707385 16..399 1920 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:58:41 has no hits.

BS17282.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:15 Download gff for BS17282.complete
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:41 Download gff for BS17282.complete
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 35..408 22..395 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:51 Download gff for BS17282.complete
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 35..408 22..395 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:15 Download gff for BS17282.complete
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 29..422 16..409 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:57 Download gff for BS17282.complete
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 35..408 22..395 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:57 Download gff for BS17282.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10707008..10707381 22..395 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:51 Download gff for BS17282.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6532730..6533103 22..395 100   Plus

BS17282.3prime Sequence

411 bp (411 high quality bases) assembled on 2007-05-15

> BS17282.3prime
ATGGTCTAGAAAGCTTTTAGTCCATTGGTTTGGTGGGTGCACAAACCCGT
AGATTGTGGATGGCCGCCCCAAGCGCAGACTTGGCCTTGAAGTACTCCTG
ACTGTCCCACAAATCACTCTTGTCCATCATGTAGGCAAGCAATTCTTGGT
ACTCCCGCATCAGCAGACGATGGGTGGCAGCCGTCTTCAACTGTTGCATC
TCAAATAGCTCGGAAAGAGTCGGCAGGTCCTCAAGCTCTTGATCACTCGC
AGTCTTCAGCCTAATATTTTCGTGCTGGGTTCTCAAAAGGCAATATTCAT
TATACTGCTCTCGCAGACTCTTGCCAAGATAATTGAGGACTGCAGTGCGC
AGAATAAATTGCCGTATGACCGGATCGGCATTAGTGCGGCGGAACATGTC
GACTGATAACT

BS17282.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-PA 381 CG14684-RA 1..381 397..17 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-RA 487 CG14684-RA 29..412 398..15 1920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10707002..10707385 398..15 1920 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:03:11 has no hits.

BS17282.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:03 Download gff for BS17282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14684-PA 1..381 17..397 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:49 Download gff for BS17282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 29..422 5..398 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:18 Download gff for BS17282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 29..422 5..398 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:18 Download gff for BS17282.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10707002..10707395 5..398 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:49 Download gff for BS17282.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6532724..6533117 5..398 98   Minus

BS17282.5prime Sequence

411 bp (411 high quality bases) assembled on 2007-05-15

> BS17282.5prime
GAAGTTATCAGTCGACATGTTCCGCCGCACTAATGCCGATCCGGTCATAC
GGCAATTTATTCTGCGCACTGCAGTCCTCAATTATCTTGGCAAGAGTCTG
CGAGAGCAGTATAATGAATATTGCCTTTTGAGAACCCAGCACGAAAATAT
TAGGCTGAAGACTGCGAGTGATCAAGAGCTTGAGGACCTGCCGACTCTTT
CCGAGCTATTTGAGATGCAACAGTTGAAGACGGCTGCCACCCATCGTCTG
CTGATGCGGGAGTACCAAGAATTGCTTGCCTACATGATGGACAAGAGTGA
TTTGTGGGACAGTCAGGAGTACTTCAAGGCCAAGTCTGCGCTTGGGGCGG
CCATCCACAATCTACGGGTTTGTGCACCCACCAAACCAATGGACTAAAAG
CTTTCTAGACC

BS17282.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-PA 381 CG14684-RA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-RA 487 CG14684-RA 29..412 16..399 1920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10707002..10707385 16..399 1920 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:27:54 has no hits.

BS17282.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:16:03 Download gff for BS17282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14684-PA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:29 Download gff for BS17282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 29..422 16..409 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:31 Download gff for BS17282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 29..422 16..409 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:31 Download gff for BS17282.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10707002..10707395 16..409 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:29 Download gff for BS17282.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6532724..6533117 16..409 98   Plus

BS17282.pep Sequence

Translation from 16 to 396

> BS17282.pep
MFRRTNADPVIRQFILRTAVLNYLGKSLREQYNEYCLLRTQHENIRLKTA
SDQELEDLPTLSELFEMQQLKTAATHRLLMREYQELLAYMMDKSDLWDSQ
EYFKAKSALGAAIHNLRVCAPTKPMD*

BS17282.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-PA 126 CG14684-PA 1..126 1..126 648 100 Plus