Clone BS17285 Report

Search the DGRC for BS17285

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG15863-RA
Protein status:BS17285.pep: full length peptide match
Sequenced Size:431

Clone Sequence Records

BS17285.complete Sequence

431 bp assembled on 2010-02-09

GenBank Submission: KX802920

> BS17285.complete
GAAGTTATCAGTCGACATGTCGCAAACAGATCTGAACAAAAGTATTGAGA
TAATAACCAAGACCGAGGAGTTGGCCGACAAAATTCTGGTCAACAAGCAG
GAACTGACGGTAATGGATAAACGCCGCCAAGAAACCCGGCAGGCAATGCG
GCTGATGGAGAAGTCGGAGGACAAGAAAGTTTGGATCACTATTGGCAGTA
TGCTAGTCAAAATGGAGCGGGAAAAGGCATTGGAACTGCTCAAAAAAGAT
CAACAGAAAATAGAACAGCAAATCAATCTGATATACTCAGATCAGAAAGT
TCTGGTGAACAAACATCGCGATTTGGAGTTCAAATCGCCCTTCTCGGGTA
CACATCTTAAGCCCTTAGAAAAGAAGGAGTTCGACGCTCTGAAAGCAAAT
CTCCCATTACTGTGAAAGCTTTCTAGACCAT

BS17285.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG15863-RA 399 CG15863-PA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15863-RA 562 CG15863-RA 58..458 17..417 2005 100 Plus
Pal1-RA 2621 CG12130-RA 1..86 143..58 430 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9959444..9959675 248..17 1160 100 Minus
2R 25286936 2R 9959223..9959393 417..247 855 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:20:42 has no hits.

BS17285.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:22 Download gff for BS17285.complete
Subject Subject Range Query Range Percent Splice Strand
CG15863-RA 1..399 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:12 Download gff for BS17285.complete
Subject Subject Range Query Range Percent Splice Strand
CG15863-RA 1..398 17..414 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:13 Download gff for BS17285.complete
Subject Subject Range Query Range Percent Splice Strand
CG15863-RA 58..455 17..414 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:15 Download gff for BS17285.complete
Subject Subject Range Query Range Percent Splice Strand
CG15863-RA 1..398 17..414 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:11 Download gff for BS17285.complete
Subject Subject Range Query Range Percent Splice Strand
CG15863-RA 58..455 17..414 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:11 Download gff for BS17285.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9959226..9959391 249..414 100 <- Minus
2R 9959444..9959675 17..248 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:13 Download gff for BS17285.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5846731..5846896 249..414 100 <- Minus
arm_2R 5846949..5847180 17..248 100   Minus

BS17285.5prime Sequence

429 bp (429 high quality bases) assembled on 2007-05-15

> BS17285.5prime
GAAGTTATCAGTCGACATGTCGCAAACAGATCTGAACAAAAGTATTGAGA
TAATAACCAAGACCGAGGAGTTGGCCGACAAAATTCTGGTCAACAAGCAG
GAACTGACGGTAATGGATAAACGCCGCCAAGAAACCCGGCAGGCAATGCG
GCTGATGGAGAAGTCGGAGGACAAGAAAGTTTGGATCACTATTGGCAGTA
TGCTAGTCAAAATGGAGCGGGAAAAGGCATTGGAACTGCTCAAAAAAGAT
CAACAGAAAATAGAACAGCAAATCAATCTGATATACTCAGATCAGAAAGT
TCTGGTGAACAAACATCGCGATTTGGAGTTCAAATCGCCCTTCTCGGGTA
CACATCTTAAGCCCTTAGAAAAGAAGGAGTTCGACGCTCTGAAAGCAAAT
CTCCCATTACTGTGAAAGCTTTCTAGACC

BS17285.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15863-PA 399 CG15863-RA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15863-RA 562 CG15863-RA 58..458 17..417 2005 100 Plus
Pal1-RA 2621 CG12130-RA 1..86 143..58 430 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9959444..9959675 248..17 1160 100 Minus
2R 25286936 2R 9959223..9959393 417..247 855 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:32:07 has no hits.

BS17285.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:15 Download gff for BS17285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15863-PA 1..399 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:15:44 Download gff for BS17285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15863-RA 58..463 17..421 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:49 Download gff for BS17285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15863-RA 58..463 17..421 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:49 Download gff for BS17285.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9959218..9959391 249..421 98 <- Minus
2R 9959444..9959675 17..248 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:15:44 Download gff for BS17285.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5846723..5846896 249..421 98 <- Minus
arm_2R 5846949..5847180 17..248 100   Minus

BS17285.pep Sequence

Translation from 16 to 414

> BS17285.pep
MSQTDLNKSIEIITKTEELADKILVNKQELTVMDKRRQETRQAMRLMEKS
EDKKVWITIGSMLVKMEREKALELLKKDQQKIEQQINLIYSDQKVLVNKH
RDLEFKSPFSGTHLKPLEKKEFDALKANLPLL*

BS17285.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15863-PA 132 CG15863-PA 1..132 1..132 653 100 Plus