Clone Sequence Records
BS17285.complete Sequence
431 bp assembled on 2010-02-09
GenBank Submission: KX802920
> BS17285.complete
GAAGTTATCAGTCGACATGTCGCAAACAGATCTGAACAAAAGTATTGAGA
TAATAACCAAGACCGAGGAGTTGGCCGACAAAATTCTGGTCAACAAGCAG
GAACTGACGGTAATGGATAAACGCCGCCAAGAAACCCGGCAGGCAATGCG
GCTGATGGAGAAGTCGGAGGACAAGAAAGTTTGGATCACTATTGGCAGTA
TGCTAGTCAAAATGGAGCGGGAAAAGGCATTGGAACTGCTCAAAAAAGAT
CAACAGAAAATAGAACAGCAAATCAATCTGATATACTCAGATCAGAAAGT
TCTGGTGAACAAACATCGCGATTTGGAGTTCAAATCGCCCTTCTCGGGTA
CACATCTTAAGCCCTTAGAAAAGAAGGAGTTCGACGCTCTGAAAGCAAAT
CTCCCATTACTGTGAAAGCTTTCTAGACCAT
BS17285.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15863-RA | 399 | CG15863-PA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15863-RA | 562 | CG15863-RA | 58..458 | 17..417 | 2005 | 100 | Plus |
Pal1-RA | 2621 | CG12130-RA | 1..86 | 143..58 | 430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9959444..9959675 | 248..17 | 1160 | 100 | Minus |
2R | 25286936 | 2R | 9959223..9959393 | 417..247 | 855 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:20:42 has no hits.
BS17285.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:22 Download gff for
BS17285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15863-RA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:12 Download gff for
BS17285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15863-RA | 1..398 | 17..414 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:13 Download gff for
BS17285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15863-RA | 58..455 | 17..414 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:15 Download gff for
BS17285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15863-RA | 1..398 | 17..414 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:11 Download gff for
BS17285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15863-RA | 58..455 | 17..414 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:11 Download gff for
BS17285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9959226..9959391 | 249..414 | 100 | <- | Minus |
2R | 9959444..9959675 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:13 Download gff for
BS17285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5846731..5846896 | 249..414 | 100 | <- | Minus |
arm_2R | 5846949..5847180 | 17..248 | 100 | | Minus |
BS17285.5prime Sequence
429 bp (429 high quality bases) assembled on 2007-05-15
> BS17285.5prime
GAAGTTATCAGTCGACATGTCGCAAACAGATCTGAACAAAAGTATTGAGA
TAATAACCAAGACCGAGGAGTTGGCCGACAAAATTCTGGTCAACAAGCAG
GAACTGACGGTAATGGATAAACGCCGCCAAGAAACCCGGCAGGCAATGCG
GCTGATGGAGAAGTCGGAGGACAAGAAAGTTTGGATCACTATTGGCAGTA
TGCTAGTCAAAATGGAGCGGGAAAAGGCATTGGAACTGCTCAAAAAAGAT
CAACAGAAAATAGAACAGCAAATCAATCTGATATACTCAGATCAGAAAGT
TCTGGTGAACAAACATCGCGATTTGGAGTTCAAATCGCCCTTCTCGGGTA
CACATCTTAAGCCCTTAGAAAAGAAGGAGTTCGACGCTCTGAAAGCAAAT
CTCCCATTACTGTGAAAGCTTTCTAGACC
BS17285.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15863-PA | 399 | CG15863-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15863-RA | 562 | CG15863-RA | 58..458 | 17..417 | 2005 | 100 | Plus |
Pal1-RA | 2621 | CG12130-RA | 1..86 | 143..58 | 430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9959444..9959675 | 248..17 | 1160 | 100 | Minus |
2R | 25286936 | 2R | 9959223..9959393 | 417..247 | 855 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:32:07 has no hits.
BS17285.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:15 Download gff for
BS17285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15863-PA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:15:44 Download gff for
BS17285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15863-RA | 58..463 | 17..421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:49 Download gff for
BS17285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15863-RA | 58..463 | 17..421 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:49 Download gff for
BS17285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9959218..9959391 | 249..421 | 98 | <- | Minus |
2R | 9959444..9959675 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:15:44 Download gff for
BS17285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5846723..5846896 | 249..421 | 98 | <- | Minus |
arm_2R | 5846949..5847180 | 17..248 | 100 | | Minus |
BS17285.pep Sequence
Translation from 16 to 414
> BS17285.pep
MSQTDLNKSIEIITKTEELADKILVNKQELTVMDKRRQETRQAMRLMEKS
EDKKVWITIGSMLVKMEREKALELLKKDQQKIEQQINLIYSDQKVLVNKH
RDLEFKSPFSGTHLKPLEKKEFDALKANLPLL*
BS17285.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15863-PA | 132 | CG15863-PA | 1..132 | 1..132 | 653 | 100 | Plus |