Clone Sequence Records
BS17286.3prime Sequence
375 bp (375 high quality bases) assembled on 2007-05-15
> BS17286.3prime
ATGGTCTAGAAAGCTTTCAGAAATTCGATGGCCTATAGTCATAGGCAGGT
CCCATGCGAATGGAGATGTTGATGGGTTCGTTTAAACGCTCTGTCATCAG
CCGTTTTTCTGCTTCGCTCTCGCAACTCCGATAGCCTTTCCGGCGGGCCG
ATTTGTTAAGACGTAACGATCGCCTCAGTTCTTTGGGCAGCGGTTTATTC
GTTTCACGCCGGAGAAAACTTCCGAATTTGTGGCACTTCTCGGCGAGATT
CTGCCACACCAGCAGGATCAGACGCGTGTGCCGCGACGAGGTGGATGAGG
CTTTGGAGCCTTTGGTACCACAATCGCGCAGCTCGGTGGTGGAGACAACC
CACGACGACATGTCGACTGATAACT
BS17286.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:19:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-PA | 345 | CG18577-RA | 1..345 | 361..17 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-RA | 810 | CG18577-RA | 15..359 | 361..17 | 1725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11196106..11196366 | 361..101 | 1305 | 100 | Minus |
3R | 32079331 | 3R | 11196749..11196834 | 102..17 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:37:49 has no hits.
BS17286.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:19:58 Download gff for
BS17286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-PA | 1..345 | 17..361 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:41 Download gff for
BS17286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 9..364 | 11..367 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:41 Download gff for
BS17286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 9..364 | 11..367 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:41 Download gff for
BS17286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11196100..11196365 | 102..367 | 99 | -> | Minus |
3R | 11196750..11196836 | 15..101 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:41 Download gff for
BS17286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7021822..7022087 | 102..367 | 99 | -> | Minus |
arm_3R | 7022472..7022558 | 15..101 | 97 | -> | Minus |
BS17286.5prime Sequence
375 bp (375 high quality bases) assembled on 2007-05-15
> BS17286.5prime
GAAGTTATCAGTCGACATGTCGTCGTGGGTTGTCTCCACCACCGAGCTGC
GCGATTGTGGTACCAAAGGCTCCAAAGCCTCATCCACCTCGTCGCGGCAC
ACGCGTCTGATCCTGCTGGTGTGGCAGAATCTCGCCGAGAAGTGCCACAA
ATTCGGAAGTTTTCTCCGGCGTGAAACGAATAAACCGCTGCCCAAAGAAC
TGAGGCGATCGTTACGTCTTAACAAATCGGCCCGCCGGAAAGGCTATCGG
AGTTGCGAGAGCGAAGCAGAAAAACGGCTGATGACAGAGCGTTTAAACGA
ACCCATCAACATCTCCATTCGCATGGGACCTGCCTATGACTATAGGCCAT
CGAATTTCTGAAAGCTTTCTAGACC
BS17286.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-PA | 345 | CG18577-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-RA | 810 | CG18577-RA | 15..359 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11196106..11196366 | 17..277 | 1305 | 100 | Plus |
3R | 32079331 | 3R | 11196749..11196834 | 276..361 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:42:33 has no hits.
BS17286.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:24 Download gff for
BS17286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-PA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:09 Download gff for
BS17286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 9..364 | 11..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:50 Download gff for
BS17286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 9..364 | 11..367 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:50 Download gff for
BS17286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11196100..11196365 | 11..276 | 99 | -> | Plus |
3R | 11196750..11196839 | 277..367 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:09 Download gff for
BS17286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7021822..7022087 | 11..276 | 99 | -> | Plus |
arm_3R | 7022472..7022561 | 277..367 | 96 | | Plus |
BS17286.complete Sequence
377 bp assembled on 2012-04-25
GenBank Submission: KX806515
> BS17286.complete
GAAGTTATCAGTCGACATGTCGTCGTGGGTTGTCTCCACCACCGAGCTGC
GCGATTGTGGTACCAAAGGCTCCAAAGCCTCATCCACCTCGTCGCGGCAC
ACGCGTCTGATCCTGCTGGTGTGGCAGAATCTCGCCGAGAAGTGCCACAA
ATTCGGAAGTTTTCTCCGGCGTGAAACGAATAAACCGCTGCCCAAAGAAC
TGAGGCGATCGTTACGTCTTAACAAATCGGCCCGCCGGAAAGGCTATCGG
AGTTGCGAGAGCGAAGCAGAAAAACGGCTGATGACAGAGCGTTTAAACGA
ACCCATCAACATCTCCATTCGCATGGGACCTGCCTATGACTATAGGCCAT
CGAATTTCTGAAAGCTTTCTAGACCAT
BS17286.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-RA | 345 | CG18577-PA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-RA | 810 | CG18577-RA | 15..359 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11196106..11196366 | 17..277 | 1305 | 100 | Plus |
3R | 32079331 | 3R | 11196749..11196834 | 276..361 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:17:27 has no hits.
BS17286.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:06 Download gff for
BS17286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:31 Download gff for
BS17286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 3..346 | 17..360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:47 Download gff for
BS17286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 3..346 | 17..360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:06 Download gff for
BS17286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 15..358 | 17..360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:06 Download gff for
BS17286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 1..350 | 17..367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:14 Download gff for
BS17286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 15..358 | 17..360 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:14 Download gff for
BS17286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11196106..11196365 | 17..276 | 100 | -> | Plus |
3R | 11196750..11196833 | 277..360 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:06 Download gff for
BS17286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7021828..7022087 | 17..276 | 100 | -> | Plus |
arm_3R | 7022472..7022555 | 277..360 | 100 | | Plus |
BS17286.pep Sequence
Translation from 16 to 360
> BS17286.pep
MSSWVVSTTELRDCGTKGSKASSTSSRHTRLILLVWQNLAEKCHKFGSFL
RRETNKPLPKELRRSLRLNKSARRKGYRSCESEAEKRLMTERLNEPINIS
IRMGPAYDYRPSNF*
BS17286.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-PA | 114 | CG18577-PA | 1..114 | 1..114 | 593 | 100 | Plus |