Clone BS17286 Report

Search the DGRC for BS17286

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG18577-RA
Protein status:BS17286.pep: full length peptide match
Sequenced Size:377

Clone Sequence Records

BS17286.3prime Sequence

375 bp (375 high quality bases) assembled on 2007-05-15

> BS17286.3prime
ATGGTCTAGAAAGCTTTCAGAAATTCGATGGCCTATAGTCATAGGCAGGT
CCCATGCGAATGGAGATGTTGATGGGTTCGTTTAAACGCTCTGTCATCAG
CCGTTTTTCTGCTTCGCTCTCGCAACTCCGATAGCCTTTCCGGCGGGCCG
ATTTGTTAAGACGTAACGATCGCCTCAGTTCTTTGGGCAGCGGTTTATTC
GTTTCACGCCGGAGAAAACTTCCGAATTTGTGGCACTTCTCGGCGAGATT
CTGCCACACCAGCAGGATCAGACGCGTGTGCCGCGACGAGGTGGATGAGG
CTTTGGAGCCTTTGGTACCACAATCGCGCAGCTCGGTGGTGGAGACAACC
CACGACGACATGTCGACTGATAACT

BS17286.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-PA 345 CG18577-RA 1..345 361..17 1725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-RA 810 CG18577-RA 15..359 361..17 1725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11196106..11196366 361..101 1305 100 Minus
3R 32079331 3R 11196749..11196834 102..17 430 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:37:49 has no hits.

BS17286.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:19:58 Download gff for BS17286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18577-PA 1..345 17..361 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:41 Download gff for BS17286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 9..364 11..367 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:41 Download gff for BS17286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 9..364 11..367 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:41 Download gff for BS17286.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11196100..11196365 102..367 99 -> Minus
3R 11196750..11196836 15..101 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:41 Download gff for BS17286.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7021822..7022087 102..367 99 -> Minus
arm_3R 7022472..7022558 15..101 97 -> Minus

BS17286.5prime Sequence

375 bp (375 high quality bases) assembled on 2007-05-15

> BS17286.5prime
GAAGTTATCAGTCGACATGTCGTCGTGGGTTGTCTCCACCACCGAGCTGC
GCGATTGTGGTACCAAAGGCTCCAAAGCCTCATCCACCTCGTCGCGGCAC
ACGCGTCTGATCCTGCTGGTGTGGCAGAATCTCGCCGAGAAGTGCCACAA
ATTCGGAAGTTTTCTCCGGCGTGAAACGAATAAACCGCTGCCCAAAGAAC
TGAGGCGATCGTTACGTCTTAACAAATCGGCCCGCCGGAAAGGCTATCGG
AGTTGCGAGAGCGAAGCAGAAAAACGGCTGATGACAGAGCGTTTAAACGA
ACCCATCAACATCTCCATTCGCATGGGACCTGCCTATGACTATAGGCCAT
CGAATTTCTGAAAGCTTTCTAGACC

BS17286.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-PA 345 CG18577-RA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-RA 810 CG18577-RA 15..359 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11196106..11196366 17..277 1305 100 Plus
3R 32079331 3R 11196749..11196834 276..361 430 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:42:33 has no hits.

BS17286.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:24 Download gff for BS17286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18577-PA 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:09 Download gff for BS17286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 9..364 11..367 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:50 Download gff for BS17286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 9..364 11..367 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:50 Download gff for BS17286.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11196100..11196365 11..276 99 -> Plus
3R 11196750..11196839 277..367 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:09 Download gff for BS17286.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7021822..7022087 11..276 99 -> Plus
arm_3R 7022472..7022561 277..367 96   Plus

BS17286.complete Sequence

377 bp assembled on 2012-04-25

GenBank Submission: KX806515

> BS17286.complete
GAAGTTATCAGTCGACATGTCGTCGTGGGTTGTCTCCACCACCGAGCTGC
GCGATTGTGGTACCAAAGGCTCCAAAGCCTCATCCACCTCGTCGCGGCAC
ACGCGTCTGATCCTGCTGGTGTGGCAGAATCTCGCCGAGAAGTGCCACAA
ATTCGGAAGTTTTCTCCGGCGTGAAACGAATAAACCGCTGCCCAAAGAAC
TGAGGCGATCGTTACGTCTTAACAAATCGGCCCGCCGGAAAGGCTATCGG
AGTTGCGAGAGCGAAGCAGAAAAACGGCTGATGACAGAGCGTTTAAACGA
ACCCATCAACATCTCCATTCGCATGGGACCTGCCTATGACTATAGGCCAT
CGAATTTCTGAAAGCTTTCTAGACCAT

BS17286.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-RA 345 CG18577-PA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-RA 810 CG18577-RA 15..359 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11196106..11196366 17..277 1305 100 Plus
3R 32079331 3R 11196749..11196834 276..361 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 12:17:27 has no hits.

BS17286.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:06 Download gff for BS17286.complete
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:31 Download gff for BS17286.complete
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 3..346 17..360 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:47 Download gff for BS17286.complete
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 3..346 17..360 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:06 Download gff for BS17286.complete
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 15..358 17..360 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:06 Download gff for BS17286.complete
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 1..350 17..367 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:14 Download gff for BS17286.complete
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 15..358 17..360 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:14 Download gff for BS17286.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11196106..11196365 17..276 100 -> Plus
3R 11196750..11196833 277..360 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:06 Download gff for BS17286.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7021828..7022087 17..276 100 -> Plus
arm_3R 7022472..7022555 277..360 100   Plus

BS17286.pep Sequence

Translation from 16 to 360

> BS17286.pep
MSSWVVSTTELRDCGTKGSKASSTSSRHTRLILLVWQNLAEKCHKFGSFL
RRETNKPLPKELRRSLRLNKSARRKGYRSCESEAEKRLMTERLNEPINIS
IRMGPAYDYRPSNF*

BS17286.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-PA 114 CG18577-PA 1..114 1..114 593 100 Plus