Clone BS17287 Report

Search the DGRC for BS17287

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG30441-RB
Protein status:BS17287.pep: full length peptide match
Sequenced Size:428

Clone Sequence Records

BS17287.complete Sequence

428 bp assembled on 2010-02-09

GenBank Submission: KX800245

> BS17287.complete
GAAGTTATCAGTCGACATGGAAGAACTTCAAAAAGTTGGTGTGTTTATAG
ATGAAATTTACACGGTGCGAGTTGAGCATCCAAACCTTTCCAGTAGCAAA
ATAATGTTTAAACAAGAATGCTTCAACTACATTAAAGCATTCACTATTTT
TAAAAAGTTTGTGTTTAATTATTGTAATATTTCTGAAACGTTTGCCAAAG
ATGTCGATAAGGAAAAACTACGCGCTATTGGTACTCAAAATCAATTAAAA
ACGGCATTTATTCAGCGCCAGAACAAGCAGCAAGTCTATCAATATGAGAT
ATTTGAGCAAACAGTAGAACTTGAACGCTTAAAAGGCGAATTGCAGTTTT
TACAGCGAATTGAAACGGAGCAACATGAAATAATAAACAATTTTTTTGTC
AATCAATATTAAAAGCTTTCTAGACCAT

BS17287.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-RB 396 CG30441-PB 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-RB 406 CG30441-RB 7..404 17..414 1990 100 Plus
CG10395-RE 1438 CG10395-RE 1185..1438 414..161 1270 100 Minus
CG10395-RD 1175 CG10395-RD 922..1175 414..161 1270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5351719..5352116 414..17 1990 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:58:52 has no hits.

BS17287.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:16 Download gff for BS17287.complete
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:45 Download gff for BS17287.complete
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 7..400 17..410 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:55 Download gff for BS17287.complete
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 7..400 17..410 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:16 Download gff for BS17287.complete
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 10..418 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:01 Download gff for BS17287.complete
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 7..400 17..410 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:01 Download gff for BS17287.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5351723..5352116 17..410 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:55 Download gff for BS17287.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1239228..1239621 17..410 100   Minus

BS17287.3prime Sequence

426 bp (426 high quality bases) assembled on 2007-05-15

> BS17287.3prime
ATGGTCTAGAAAGCTTTTAATATTGATTGACAAAAAAATTGTTTATTATT
TCATGTTGCTCCGTTTCAATTCGCTGTAAAAACTGCAATTCGCCTTTTAA
GCGTTCAAGTTCTACTGTTTGCTCAAATATCTCATATTGATAGACTTGCT
GCTTGTTCTGGCGCTGAATAAATGCCGTTTTTAATTGATTTTGAGTACCA
ATAGCGCGTAGTTTTTCCTTATCGACATCTTTGGCAAACGTTTCAGAAAT
ATTACAATAATTAAACACAAACTTTTTAAAAATAGTGAATGCTTTAATGT
AGTTGAAGCATTCTTGTTTAAACATTATTTTGCTACTGGAAAGGTTTGGA
TGCTCAACTCGCACCGTGTAAATTTCATCTATAAACACACCAACTTTTTG
AAGTTCTTCCATGTCGACTGATAACT

BS17287.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-PA 402 CG30441-RA 7..402 412..17 1980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-RB 406 CG30441-RB 7..404 412..15 1990 100 Minus
CG10395-RE 1438 CG10395-RE 1185..1438 15..268 1270 100 Plus
CG10395-RD 1175 CG10395-RD 922..1175 15..268 1270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5351719..5352116 15..412 1990 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:49:27 has no hits.

BS17287.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:08 Download gff for BS17287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-PA 1..402 17..419 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:12 Download gff for BS17287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 11..419 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:31:36 Download gff for BS17287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 11..419 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:31:36 Download gff for BS17287.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5351717..5352123 11..420 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:12 Download gff for BS17287.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1239222..1239628 11..420 98   Plus

BS17287.5prime Sequence

426 bp (426 high quality bases) assembled on 2007-05-15

> BS17287.5prime
GAAGTTATCAGTCGACATGGAAGAACTTCAAAAAGTTGGTGTGTTTATAG
ATGAAATTTACACGGTGCGAGTTGAGCATCCAAACCTTTCCAGTAGCAAA
ATAATGTTTAAACAAGAATGCTTCAACTACATTAAAGCATTCACTATTTT
TAAAAAGTTTGTGTTTAATTATTGTAATATTTCTGAAACGTTTGCCAAAG
ATGTCGATAAGGAAAAACTACGCGCTATTGGTACTCAAAATCAATTAAAA
ACGGCATTTATTCAGCGCCAGAACAAGCAGCAAGTCTATCAATATGAGAT
ATTTGAGCAAACAGTAGAACTTGAACGCTTAAAAGGCGAATTGCAGTTTT
TACAGCGAATTGAAACGGAGCAACATGAAATAATAAACAATTTTTTTGTC
AATCAATATTAAAAGCTTTCTAGACC

BS17287.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-PA 402 CG30441-RA 7..402 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-RB 406 CG30441-RB 7..404 17..414 1990 100 Plus
CG10395-RE 1438 CG10395-RE 1185..1438 414..161 1270 100 Minus
CG10395-RD 1175 CG10395-RD 922..1175 414..161 1270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5351719..5352116 414..17 1990 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:52:27 has no hits.

BS17287.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:34 Download gff for BS17287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-PA 1..402 10..412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:43 Download gff for BS17287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 10..418 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:33 Download gff for BS17287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 10..418 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:33 Download gff for BS17287.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5351717..5352123 9..418 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:43 Download gff for BS17287.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1239222..1239628 9..418 98   Minus

BS17287.pep Sequence

Translation from 16 to 411

> BS17287.pep
MEELQKVGVFIDEIYTVRVEHPNLSSSKIMFKQECFNYIKAFTIFKKFVF
NYCNISETFAKDVDKEKLRAIGTQNQLKTAFIQRQNKQQVYQYEIFEQTV
ELERLKGELQFLQRIETEQHEIINNFFVNQY*

BS17287.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-PB 131 CG30441-PB 1..131 1..131 674 100 Plus