Clone Sequence Records
BS17287.complete Sequence
428 bp assembled on 2010-02-09
GenBank Submission: KX800245
> BS17287.complete
GAAGTTATCAGTCGACATGGAAGAACTTCAAAAAGTTGGTGTGTTTATAG
ATGAAATTTACACGGTGCGAGTTGAGCATCCAAACCTTTCCAGTAGCAAA
ATAATGTTTAAACAAGAATGCTTCAACTACATTAAAGCATTCACTATTTT
TAAAAAGTTTGTGTTTAATTATTGTAATATTTCTGAAACGTTTGCCAAAG
ATGTCGATAAGGAAAAACTACGCGCTATTGGTACTCAAAATCAATTAAAA
ACGGCATTTATTCAGCGCCAGAACAAGCAGCAAGTCTATCAATATGAGAT
ATTTGAGCAAACAGTAGAACTTGAACGCTTAAAAGGCGAATTGCAGTTTT
TACAGCGAATTGAAACGGAGCAACATGAAATAATAAACAATTTTTTTGTC
AATCAATATTAAAAGCTTTCTAGACCAT
BS17287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-RB | 396 | CG30441-PB | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-RB | 406 | CG30441-RB | 7..404 | 17..414 | 1990 | 100 | Plus |
CG10395-RE | 1438 | CG10395-RE | 1185..1438 | 414..161 | 1270 | 100 | Minus |
CG10395-RD | 1175 | CG10395-RD | 922..1175 | 414..161 | 1270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5351719..5352116 | 414..17 | 1990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:58:52 has no hits.
BS17287.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:16 Download gff for
BS17287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:45 Download gff for
BS17287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 7..400 | 17..410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:55 Download gff for
BS17287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 7..400 | 17..410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:16 Download gff for
BS17287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 1..406 | 10..418 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:01 Download gff for
BS17287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 7..400 | 17..410 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:01 Download gff for
BS17287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5351723..5352116 | 17..410 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:55 Download gff for
BS17287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1239228..1239621 | 17..410 | 100 | | Minus |
BS17287.3prime Sequence
426 bp (426 high quality bases) assembled on 2007-05-15
> BS17287.3prime
ATGGTCTAGAAAGCTTTTAATATTGATTGACAAAAAAATTGTTTATTATT
TCATGTTGCTCCGTTTCAATTCGCTGTAAAAACTGCAATTCGCCTTTTAA
GCGTTCAAGTTCTACTGTTTGCTCAAATATCTCATATTGATAGACTTGCT
GCTTGTTCTGGCGCTGAATAAATGCCGTTTTTAATTGATTTTGAGTACCA
ATAGCGCGTAGTTTTTCCTTATCGACATCTTTGGCAAACGTTTCAGAAAT
ATTACAATAATTAAACACAAACTTTTTAAAAATAGTGAATGCTTTAATGT
AGTTGAAGCATTCTTGTTTAAACATTATTTTGCTACTGGAAAGGTTTGGA
TGCTCAACTCGCACCGTGTAAATTTCATCTATAAACACACCAACTTTTTG
AAGTTCTTCCATGTCGACTGATAACT
BS17287.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-PA | 402 | CG30441-RA | 7..402 | 412..17 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-RB | 406 | CG30441-RB | 7..404 | 412..15 | 1990 | 100 | Minus |
CG10395-RE | 1438 | CG10395-RE | 1185..1438 | 15..268 | 1270 | 100 | Plus |
CG10395-RD | 1175 | CG10395-RD | 922..1175 | 15..268 | 1270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:49:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5351719..5352116 | 15..412 | 1990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:49:27 has no hits.
BS17287.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:08 Download gff for
BS17287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-PA | 1..402 | 17..419 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:12 Download gff for
BS17287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 1..406 | 11..419 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:31:36 Download gff for
BS17287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 1..406 | 11..419 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:31:36 Download gff for
BS17287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5351717..5352123 | 11..420 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:12 Download gff for
BS17287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1239222..1239628 | 11..420 | 98 | | Plus |
BS17287.5prime Sequence
426 bp (426 high quality bases) assembled on 2007-05-15
> BS17287.5prime
GAAGTTATCAGTCGACATGGAAGAACTTCAAAAAGTTGGTGTGTTTATAG
ATGAAATTTACACGGTGCGAGTTGAGCATCCAAACCTTTCCAGTAGCAAA
ATAATGTTTAAACAAGAATGCTTCAACTACATTAAAGCATTCACTATTTT
TAAAAAGTTTGTGTTTAATTATTGTAATATTTCTGAAACGTTTGCCAAAG
ATGTCGATAAGGAAAAACTACGCGCTATTGGTACTCAAAATCAATTAAAA
ACGGCATTTATTCAGCGCCAGAACAAGCAGCAAGTCTATCAATATGAGAT
ATTTGAGCAAACAGTAGAACTTGAACGCTTAAAAGGCGAATTGCAGTTTT
TACAGCGAATTGAAACGGAGCAACATGAAATAATAAACAATTTTTTTGTC
AATCAATATTAAAAGCTTTCTAGACC
BS17287.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-PA | 402 | CG30441-RA | 7..402 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-RB | 406 | CG30441-RB | 7..404 | 17..414 | 1990 | 100 | Plus |
CG10395-RE | 1438 | CG10395-RE | 1185..1438 | 414..161 | 1270 | 100 | Minus |
CG10395-RD | 1175 | CG10395-RD | 922..1175 | 414..161 | 1270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5351719..5352116 | 414..17 | 1990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:52:27 has no hits.
BS17287.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:34 Download gff for
BS17287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-PA | 1..402 | 10..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:43 Download gff for
BS17287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 1..406 | 10..418 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:33 Download gff for
BS17287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 1..406 | 10..418 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:33 Download gff for
BS17287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5351717..5352123 | 9..418 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:43 Download gff for
BS17287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1239222..1239628 | 9..418 | 98 | | Minus |
BS17287.pep Sequence
Translation from 16 to 411
> BS17287.pep
MEELQKVGVFIDEIYTVRVEHPNLSSSKIMFKQECFNYIKAFTIFKKFVF
NYCNISETFAKDVDKEKLRAIGTQNQLKTAFIQRQNKQQVYQYEIFEQTV
ELERLKGELQFLQRIETEQHEIINNFFVNQY*
BS17287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-PB | 131 | CG30441-PB | 1..131 | 1..131 | 674 | 100 | Plus |