Clone Sequence Records
BS17293.complete Sequence
554 bp assembled on 2010-02-09
GenBank Submission: KX804612
> BS17293.complete
GAAGTTATCAGTCGACATGGAAGTTAAGGTGTTGGTTCTGATCTCCCTAG
GATTATTACTATCGCTGGCTGAGGCTCAGCAGGAGCATCCGGCGACATCT
GTGAAGAAATGTTCCGGAAGTAAACCTTTTCCGCTTGAGGTGCGTGTGCA
CAATTGCGTTACTCCACCCTGTCAGATTGTGAAGGGAACGACACAGAAGT
TCGAGATCGATTTCGCCGTGGACAAGTACATCACCCAGCTGACGACCTTG
GTAAAGGCCACCACACTCGGAATCATTACGGTGCCATATGAACTGCCTGC
GGATGTGGCTGCCGTGTGCCCGAATCTCCAGTACGGCGCCTATTGCCCGC
TGTATCCCACCGAGGATGTCTCCTATTTGTTCACCTTTCCCATTGGTGAA
TATCCCGAGATTGGCGTGAAGATCGAGATCTATCTGGTCGATCAGGACAA
TGAGATTGCCACGTGCTTCGTGTGCGATATTAAGGTGGTCAAGGGCAACG
GCGGCAATACGGTCTATGAGCTGGACTATCTCAACTGAAAGCTTTCTAGA
CCAT
BS17293.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2d-RA | 522 | CG12813-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2d-RA | 661 | CG12813-RA | 3..527 | 15..539 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10055490..10055918 | 539..111 | 2145 | 100 | Minus |
| 3R | 32079331 | 3R | 10055984..10056081 | 112..15 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:02:44 has no hits.
BS17293.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:00 Download gff for
BS17293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12813-RA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:26 Download gff for
BS17293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12813-RA | 5..525 | 17..537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:44 Download gff for
BS17293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 5..525 | 17..537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:01 Download gff for
BS17293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12813-RA | 3..530 | 15..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:27 Download gff for
BS17293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 5..525 | 17..537 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:27 Download gff for
BS17293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10055492..10055918 | 111..537 | 100 | <- | Minus |
| 3R | 10055986..10056079 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:44 Download gff for
BS17293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5881214..5881640 | 111..537 | 100 | <- | Minus |
| arm_3R | 5881708..5881801 | 17..110 | 100 | | Minus |
BS17293.3prime Sequence
552 bp (552 high quality bases) assembled on 2007-05-15
> BS17293.3prime
ATGGTCTAGAAAGCTTTCAGTTGAGATAGTCCAGCTCATAGACCGTATTG
CCGCCGTTGCCCTTGACCACCTTAATATCGCACACGAAGCACGTGGCAAT
CTCATTGTCCTGATCGACCAGATAGATCTCGATCTTCACGCCAATCTCGG
GATATTCACCAATGGGAAAGGTGAACAAATAGGAGACATCCTCGGTGGGA
TACAGCGGGCAATAGGCGCCGTACTGGAGATTCGGGCACACGGCAGCCAC
ATCCGCAGGCAGTTCATATGGCACCGTAATGATTCCGAGTGTGGTGGCCT
TTACCAAGGTCGTCAGCTGGGTGATGTACTTGTCCACGGCGAAATCGATC
TCGAACTTCTGTGTCGTTCCCTTCACAATCTGACAGGGTGGAGTAACGCA
ATTGTGCACACGCACCTCAAGCGGAAAAGGTTTACTTCCGGAACATTTCT
TCACAGATGTCGCCGGATGCTCCTGCTGAGCCTCAGCCAGCGATAGTAAT
AATCCTAGGGAGATCAGAACCAACACCTTAACTTCCATGTCGACTGATAA
CT
BS17293.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12813-PA | 522 | CG12813-RA | 1..522 | 538..17 | 2610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2d-RA | 661 | CG12813-RA | 3..527 | 540..16 | 2625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10055490..10055918 | 16..444 | 2145 | 100 | Plus |
| 3R | 32079331 | 3R | 10055984..10056081 | 443..540 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:46:55 has no hits.
BS17293.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:20:13 Download gff for
BS17293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12813-PA | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:17:34 Download gff for
BS17293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 3..530 | 11..540 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:25 Download gff for
BS17293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 3..530 | 11..540 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:25 Download gff for
BS17293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10055487..10055918 | 11..444 | 99 | <- | Plus |
| 3R | 10055986..10056085 | 445..545 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:17:34 Download gff for
BS17293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5881209..5881640 | 11..444 | 99 | <- | Plus |
| arm_3R | 5881708..5881807 | 445..545 | 97 | | Plus |
BS17293.5prime Sequence
552 bp (552 high quality bases) assembled on 2007-05-15
> BS17293.5prime
GAAGTTATCAGTCGACATGGAAGTTAAGGTGTTGGTTCTGATCTCCCTAG
GATTATTACTATCGCTGGCTGAGGCTCAGCAGGAGCATCCGGCGACATCT
GTGAAGAAATGTTCCGGAAGTAAACCTTTTCCGCTTGAGGTGCGTGTGCA
CAATTGCGTTACTCCACCCTGTCAGATTGTGAAGGGAACGACACAGAAGT
TCGAGATCGATTTCGCCGTGGACAAGTACATCACCCAGCTGACGACCTTG
GTAAAGGCCACCACACTCGGAATCATTACGGTGCCATATGAACTGCCTGC
GGATGTGGCTGCCGTGTGCCCGAATCTCCAGTACGGCGCCTATTGCCCGC
TGTATCCCACCGAGGATGTCTCCTATTTGTTCACCTTTCCCATTGGTGAA
TATCCCGAGATTGGCGTGAAGATCGAGATCTATCTGGTCGATCAGGACAA
TGAGATTGCCACGTGCTTCGTGTGCGATATTAAGGTGGTCAAGGGCAACG
GCGGCAATACGGTCTATGAGCTGGACTATCTCAACTGAAAGCTTTCTAGA
CC
BS17293.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12813-PA | 522 | CG12813-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2d-RA | 661 | CG12813-RA | 3..527 | 15..539 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10055490..10055918 | 539..111 | 2145 | 100 | Minus |
| 3R | 32079331 | 3R | 10055984..10056081 | 112..15 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:36:16 has no hits.
BS17293.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:13:39 Download gff for
BS17293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12813-PA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:18:54 Download gff for
BS17293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 3..530 | 15..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:12:07 Download gff for
BS17293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 3..530 | 15..544 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:12:07 Download gff for
BS17293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10055487..10055918 | 111..544 | 99 | <- | Minus |
| 3R | 10055986..10056085 | 10..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:18:54 Download gff for
BS17293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5881209..5881640 | 111..544 | 99 | <- | Minus |
| arm_3R | 5881708..5881807 | 10..110 | 97 | | Minus |
BS17293.pep Sequence
Translation from 16 to 537
> BS17293.pep
MEVKVLVLISLGLLLSLAEAQQEHPATSVKKCSGSKPFPLEVRVHNCVTP
PCQIVKGTTQKFEIDFAVDKYITQLTTLVKATTLGIITVPYELPADVAAV
CPNLQYGAYCPLYPTEDVSYLFTFPIGEYPEIGVKIEIYLVDQDNEIATC
FVCDIKVVKGNGGNTVYELDYLN*
BS17293.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2d-PA | 173 | CG12813-PA | 1..173 | 1..173 | 907 | 100 | Plus |
| Npc2e-PB | 168 | CG31410-PB | 4..166 | 7..173 | 272 | 38 | Plus |
| Npc2c-PA | 165 | CG3934-PA | 7..160 | 9..159 | 245 | 37.8 | Plus |
