Clone BS17294 Report

Search the DGRC for BS17294

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:172
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG13476-RB
Protein status:BS17294.pep: full length peptide match
Sequenced Size:482

Clone Sequence Records

BS17294.complete Sequence

482 bp assembled on 2010-02-09

GenBank Submission: KX800757

> BS17294.complete
GAAGTTATCAGTCGACATGAACATGAGGGGAATGGCCAAGCGTTCTATTT
GGCTCCAATGTCTTCGGGAAAATGCCACCAATATGCGCCTGGAGCACGAG
GATCTGGGACGTCGCATTGCTGTTTCTTTGGCCAGTTCCCAGAAAGCTCT
AGTTGATATCGAAAACTTGAATCAAGAGCTGTTAAAAATGAAGGACACAA
TCCATAATGCCATTTCCAATGTTATGGGCTACGAAAAGAAGTGTTGTGAA
TTGCTCCTGGAAATTTTGATTAAAATAGTTGAGAACAACGACCTGGATGC
CGAACTAAATCCCAAAATGATCTCCAAGGCGTTTCTCGACTTGGATCCGA
GTTCCGACGAGACAGAAGTTCTGAATGACCGTAGTCTTGCAGCGTCTGAT
TTTAATCAGCAATATCCAAAAGATGTGCCGGATTCTATTGATATAAACAT
AACAGAAGACCAGTAAAAGCTTTCTAGACCAT

BS17294.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-RB 450 CG13476-PB 1..450 17..466 2235 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-RB 694 CG13476-RB 81..530 17..466 2235 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14705544..14705993 17..466 2235 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 03:01:01 has no hits.

BS17294.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:27 Download gff for BS17294.complete
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 1..450 17..466 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:14 Download gff for BS17294.complete
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 63..510 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:00 Download gff for BS17294.complete
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 81..528 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:27 Download gff for BS17294.complete
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 58..517 8..473 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:48 Download gff for BS17294.complete
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 81..528 17..464 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:48 Download gff for BS17294.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14705544..14705991 17..464 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:00 Download gff for BS17294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14698644..14699091 17..464 99   Plus

BS17294.3prime Sequence

480 bp (480 high quality bases) assembled on 2007-05-15

> BS17294.3prime
ATGGTCTAGAAAGCTTTTACTGGTCTTCTGTTATGTTTATATCAATAGAA
TCCGGCACATCTTTTGGATATTGCTGATTAAAATCAGACGCTGCAAGACT
ACGGTCATTCAGAACTTCTGTCTCGTCGGAACTCGGATCCAAGTCGAGAA
ACGCCTTGGAGATCATTTTGGGATTTAGTTCGGCATCCAGGTCGTTGTTC
TCAACTATTTTAATCAAAATTTCCAGGAGCAATTCACAACACTTCTTTTC
GTAGCCCATAACATTGGAAATGGCATTATGGATTGTGTCCTTCATTTTTA
ACAGCTCTTGATTCAAGTTTTCGATATCAACTAGAGCTTTCTGGGAACTG
GCCAAAGAAACAGCAATGCGACGTCCCAGATCCTCGTGCTCCAGGCGCAT
ATTGGTGGCATTTTCCCGAAGACATTGGAGCCAAATAGAACGCTTGGCCA
TTCCCCTCATGTTCATGTCGACTGATAACT

BS17294.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-PB 450 CG13476-RB 1..450 466..17 2225 99.7 Minus
CG13476-PA 339 CG13476-RA 1..282 466..185 1385 99.6 Minus
CG13476-PA 339 CG13476-RA 283..339 73..17 285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-RB 694 CG13476-RB 81..530 466..17 2235 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14705544..14705993 466..17 2235 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 16:23:57 has no hits.

BS17294.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:31 Download gff for BS17294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-PB 1..450 17..466 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:56 Download gff for BS17294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 76..535 10..475 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:43:30 Download gff for BS17294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 76..535 10..475 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:43:30 Download gff for BS17294.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14705539..14705998 10..475 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:56 Download gff for BS17294.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14698639..14699098 10..475 98   Minus

BS17294.5prime Sequence

480 bp (480 high quality bases) assembled on 2007-05-15

> BS17294.5prime
GAAGTTATCAGTCGACATGAACATGAGGGGAATGGCCAAGCGTTCTATTT
GGCTCCAATGTCTTCGGGAAAATGCCACCAATATGCGCCTGGAGCACGAG
GATCTGGGACGTCGCATTGCTGTTTCTTTGGCCAGTTCCCAGAAAGCTCT
AGTTGATATCGAAAACTTGAATCAAGAGCTGTTAAAAATGAAGGACACAA
TCCATAATGCCATTTCCAATGTTATGGGCTACGAAAAGAAGTGTTGTGAA
TTGCTCCTGGAAATTTTGATTAAAATAGTTGAGAACAACGACCTGGATGC
CGAACTAAATCCCAAAATGATCTCCAAGGCGTTTCTCGACTTGGATCCGA
GTTCCGACGAGACAGAAGTTCTGAATGACCGTAGTCTTGCAGCGTCTGAT
TTTAATCAGCAATATCCAAAAGATGTGCCGGATTCTATTGATATAAACAT
AACAGAAGACCAGTAAAAGCTTTCTAGACC

BS17294.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-PB 450 CG13476-RB 1..450 17..466 2225 99.7 Plus
CG13476-PA 339 CG13476-RA 1..282 17..298 1385 99.6 Plus
CG13476-PA 339 CG13476-RA 283..339 410..466 285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-RB 694 CG13476-RB 81..530 17..466 2235 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14705544..14705993 17..466 2235 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 03:44:12 has no hits.

BS17294.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:16:27 Download gff for BS17294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-PB 1..450 17..466 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:25 Download gff for BS17294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 76..535 8..473 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:18 Download gff for BS17294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 76..535 8..473 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:18 Download gff for BS17294.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14705539..14705998 8..473 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:25 Download gff for BS17294.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14698639..14699098 8..473 98   Plus

BS17294.pep Sequence

Translation from 16 to 465

> BS17294.pep
MNMRGMAKRSIWLQCLRENATNMRLEHEDLGRRIAVSLASSQKALVDIEN
LNQELLKMKDTIHNAISNVMGYEKKCCELLLEILIKIVENNDLDAELNPK
MISKAFLDLDPSSDETEVLNDRSLAASDFNQQYPKDVPDSIDINITEDQ*

BS17294.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-PB 149 CG13476-PB 1..149 1..149 755 100 Plus