Clone Sequence Records
BS17296.complete Sequence
530 bp assembled on 2010-02-09
GenBank Submission: KX806210
> BS17296.complete
GAAGTTATCAGTCGACATGTCCCTCAATTGCCCGGTTCATAATAAGAACT
CCAGTGGCTTAAACATTACCAGGTCCGCAACCTCGGATGACGTCAAGATC
GCCATGTGCGCCTGCTTGGAATTGGCCAACTGTCGGGCCGAAAACTGTCA
GCTGAAGAAGAAACTGACCGAATATGAGGCCAAGATCTGCAGTCTCGAAC
AACTGGTGGCCACCATTGCGGAGGAGCAGAACCAGATTCGCCAAGAAGTG
ATCGAGTTGCGCAATGAGACTCAGGGTGCAACGATGGAAGCCGCCAACGA
GGTGGATCCTTTGGACAACTCATTCGTGAACCCGCAAGAGGAAATGGACG
ATGAGGAAGGATACGATCCGGATTCAGAATCCGAGTACAATGCTATCCAG
TCCCCCAATCCCTCAATACATTCTTCGATGGTCTCGCTGGTTCGCTCATT
GAGTTTTTCATCCACCAGCTCAGATTCTGATTGCATTGTATACAGCGATA
ATGAGGATTTCTAAAAGCTTTCTAGACCAT
BS17296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14384-RB | 498 | CG14384-PB | 1..498 | 17..514 | 2490 | 100 | Plus |
| CG14384-RA | 498 | CG14384-PA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14384-RB | 1213 | CG14384-RB | 625..1122 | 17..514 | 2490 | 100 | Plus |
| CG14384-RA | 707 | CG14384-RA | 119..616 | 17..514 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12966029..12966480 | 514..63 | 2245 | 99.8 | Minus |
| 3R | 32079331 | 3R | 12966553..12966602 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:02:28 has no hits.
BS17296.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:54 Download gff for
BS17296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-RA | 1..498 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:24 Download gff for
BS17296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-RA | 119..614 | 17..512 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:38 Download gff for
BS17296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-RA | 119..614 | 17..512 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:54 Download gff for
BS17296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-RA | 112..616 | 8..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:21 Download gff for
BS17296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-RA | 119..614 | 17..512 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:21 Download gff for
BS17296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12966031..12966476 | 67..512 | 100 | <- | Minus |
| 3R | 12966553..12966602 | 17..66 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:38 Download gff for
BS17296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8791753..8792198 | 67..512 | 100 | <- | Minus |
| arm_3R | 8792275..8792324 | 17..66 | 100 | | Minus |
BS17296.3prime Sequence
528 bp (528 high quality bases) assembled on 2007-05-15
> BS17296.3prime
ATGGTCTAGAAAGCTTTTAGAAATCCTCATTATCGCTGTATACAATGCAA
TCAGAATCTGAGCTGGTGGATGAAAAACTCAATGAGCGAACCAGCGAGAC
CATCGAAGAATGTATTGAGGGATTGGGGGACTGGATAGCATTGTACTCGG
ATTCTGAATCCGGATCGTATCCTTCCTCATCGTCCATTTCCTCTTGCGGG
TTCACGAATGAGTTGTCCAAAGGATCCACCTCGTTGGCGGCTTCCATCGT
TGCACCCTGAGTCTCATTGCGCAACTCGATCACTTCTTGGCGAATCTGGT
TCTGCTCCTCCGCAATGGTGGCCACCAGTTGTTCGAGACTGCAGATCTTG
GCCTCATATTCGGTCAGTTTCTTCTTCAGCTGACAGTTTTCGGCCCGACA
GTTGGCCAATTCCAAGCAGGCGCACATGGCGATCTTGACGTCATCCGAGG
TTGCGGACCTGGTAATGTTTAAGCCACTGGAGTTCTTATTATGAACCGGG
CAATTGAGGGACATGTCGACTGATAACT
BS17296.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14384-PA | 498 | CG14384-RA | 1..498 | 514..17 | 2490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14384-RB | 1213 | CG14384-RB | 625..1122 | 514..17 | 2490 | 100 | Minus |
| CG14384-RA | 707 | CG14384-RA | 119..616 | 514..17 | 2490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12966029..12966480 | 17..468 | 2245 | 99.8 | Plus |
| 3R | 32079331 | 3R | 12966553..12966602 | 465..514 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:24:54 has no hits.
BS17296.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:50 Download gff for
BS17296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-PA | 1..498 | 17..514 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:58 Download gff for
BS17296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-RA | 112..616 | 17..523 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:45:07 Download gff for
BS17296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-RA | 112..616 | 17..523 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:45:07 Download gff for
BS17296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12966553..12966609 | 465..523 | 93 | | Plus |
| 3R | 12966029..12966476 | 17..464 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:58 Download gff for
BS17296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8791751..8792198 | 17..464 | 100 | <- | Plus |
| arm_3R | 8792275..8792331 | 465..523 | 93 | | Plus |
BS17296.5prime Sequence
528 bp (528 high quality bases) assembled on 2007-05-15
> BS17296.5prime
GAAGTTATCAGTCGACATGTCCCTCAATTGCCCGGTTCATAATAAGAACT
CCAGTGGCTTAAACATTACCAGGTCCGCAACCTCGGATGACGTCAAGATC
GCCATGTGCGCCTGCTTGGAATTGGCCAACTGTCGGGCCGAAAACTGTCA
GCTGAAGAAGAAACTGACCGAATATGAGGCCAAGATCTGCAGTCTCGAAC
AACTGGTGGCCACCATTGCGGAGGAGCAGAACCAGATTCGCCAAGAAGTG
ATCGAGTTGCGCAATGAGACTCAGGGTGCAACGATGGAAGCCGCCAACGA
GGTGGATCCTTTGGACAACTCATTCGTGAACCCGCAAGAGGAAATGGACG
ATGAGGAAGGATACGATCCGGATTCAGAATCCGAGTACAATGCTATCCAG
TCCCCCAATCCCTCAATACATTCTTCGATGGTCTCGCTGGTTCGCTCATT
GAGTTTTTCATCCACCAGCTCAGATTCTGATTGCATTGTATACAGCGATA
ATGAGGATTTCTAAAAGCTTTCTAGACC
BS17296.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14384-PA | 498 | CG14384-RA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14384-RB | 1213 | CG14384-RB | 625..1122 | 17..514 | 2490 | 100 | Plus |
| CG14384-RA | 707 | CG14384-RA | 119..616 | 17..514 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12966029..12966480 | 514..63 | 2245 | 99.8 | Minus |
| 3R | 32079331 | 3R | 12966553..12966602 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:15:56 has no hits.
BS17296.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:16:41 Download gff for
BS17296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-PA | 1..498 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:17 Download gff for
BS17296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-RA | 112..616 | 8..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:31 Download gff for
BS17296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14384-RA | 112..616 | 8..514 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:31 Download gff for
BS17296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12966029..12966476 | 67..514 | 100 | <- | Minus |
| 3R | 12966553..12966609 | 8..66 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:17 Download gff for
BS17296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8791751..8792198 | 67..514 | 100 | <- | Minus |
| arm_3R | 8792275..8792331 | 8..66 | 93 | | Minus |
BS17296.pep Sequence
Translation from 16 to 513
> BS17296.pep
MSLNCPVHNKNSSGLNITRSATSDDVKIAMCACLELANCRAENCQLKKKL
TEYEAKICSLEQLVATIAEEQNQIRQEVIELRNETQGATMEAANEVDPLD
NSFVNPQEEMDDEEGYDPDSESEYNAIQSPNPSIHSSMVSLVRSLSFSST
SSDSDCIVYSDNEDF*
BS17296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14384-PB | 165 | CG14384-PB | 1..165 | 1..165 | 847 | 100 | Plus |
| CG14384-PA | 165 | CG14384-PA | 1..165 | 1..165 | 847 | 100 | Plus |
