Clone Sequence Records
BS17303.complete Sequence
299 bp assembled on 2010-02-09
GenBank Submission: KX806542
> BS17303.complete
GAAGTTATCAGTCGACATGAAGTATATCGGCTTTGTCGCCATCGCCTTTT
TGCTGAGTCTGTCCGGCAGTCGTTTATGGGTGCATGCCAAGCCGGAGATG
TGCCAGCAGCCCTCTTCGATGGTGGGCATGGCGCAGGATGGAGCTGCCTG
CATGGCTTTTATGCCGGCCTGGACCTATGATGCCTCCAAAAACGCCTGCA
CCGAGTTCATTTTCGGTGGCTGCGGTGGAAACTCCAATCAGTTCTCTACC
AAGAGTGAATGCGAAAAGGCCTGCAAGGACTAAAAGCTTTCTAGACCAT
BS17303.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-RA | 267 | CG3513-PA | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-RA | 423 | CG3513-RA | 15..282 | 17..284 | 1340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3692840..3693029 | 284..95 | 950 | 100 | Minus |
2L | 23513712 | 2L | 3693090..3693168 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:35:20 has no hits.
BS17303.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:47 Download gff for
BS17303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 1..267 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:24 Download gff for
BS17303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 1..265 | 17..281 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:15 Download gff for
BS17303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 15..279 | 17..281 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:47 Download gff for
BS17303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 1..267 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:17 Download gff for
BS17303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 15..279 | 17..281 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:17 Download gff for
BS17303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3692843..3693028 | 96..281 | 100 | <- | Minus |
2L | 3693090..3693168 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:15 Download gff for
BS17303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3692843..3693028 | 96..281 | 100 | <- | Minus |
arm_2L | 3693090..3693168 | 17..95 | 100 | | Minus |
BS17303.3prime Sequence
297 bp (297 high quality bases) assembled on 2007-05-15
> BS17303.3prime
ATGGTCTAGAAAGCTTTTAGTCCTTGCAGGCCTTTTCGCATTCACTCTTG
GTAGAGAACTGATTGGAGTTTCCACCGCAGCCACCGAAAATGAACTCGGT
GCAGGCGTTTTTGGAGGCATCATAGGTCCAGGCCGGCATAAAAGCCATGC
AGGCAGCTCCATCCTGCGCCATGCCCACCATCGAAGAGGGCTGCTGGCAC
ATCTCCGGCTTGGCATGCACCCATAAACGACTGCCGGACAGACTCAGCAA
AAAGGCGATGGCGACAAAGCCGATATACTTCATGTCGACTGATAACT
BS17303.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-PA | 267 | CG3513-RA | 1..267 | 283..17 | 1335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-RA | 423 | CG3513-RA | 15..282 | 283..16 | 1340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3692840..3693029 | 16..205 | 950 | 100 | Plus |
2L | 23513712 | 2L | 3693090..3693168 | 205..283 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:36:14 has no hits.
BS17303.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:21 Download gff for
BS17303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-PA | 1..267 | 17..283 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:33 Download gff for
BS17303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 2..282 | 16..297 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:31 Download gff for
BS17303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 2..282 | 16..297 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:31 Download gff for
BS17303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3692845..3693028 | 21..204 | 100 | <- | Plus |
2L | 3693090..3693181 | 205..297 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:33 Download gff for
BS17303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3692845..3693028 | 21..204 | 100 | <- | Plus |
arm_2L | 3693090..3693181 | 205..297 | 94 | | Plus |
BS17303.5prime Sequence
297 bp (297 high quality bases) assembled on 2007-05-15
> BS17303.5prime
GAAGTTATCAGTCGACATGAAGTATATCGGCTTTGTCGCCATCGCCTTTT
TGCTGAGTCTGTCCGGCAGTCGTTTATGGGTGCATGCCAAGCCGGAGATG
TGCCAGCAGCCCTCTTCGATGGTGGGCATGGCGCAGGATGGAGCTGCCTG
CATGGCTTTTATGCCGGCCTGGACCTATGATGCCTCCAAAAACGCCTGCA
CCGAGTTCATTTTCGGTGGCTGCGGTGGAAACTCCAATCAGTTCTCTACC
AAGAGTGAATGCGAAAAGGCCTGCAAGGACTAAAAGCTTTCTAGACC
BS17303.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-PA | 267 | CG3513-RA | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-RA | 423 | CG3513-RA | 15..282 | 17..284 | 1340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3692840..3693029 | 284..95 | 950 | 100 | Minus |
2L | 23513712 | 2L | 3693090..3693168 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:58:28 has no hits.
BS17303.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:12 Download gff for
BS17303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-PA | 1..267 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:18 Download gff for
BS17303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 1..282 | 2..284 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:30 Download gff for
BS17303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 1..282 | 2..284 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:30 Download gff for
BS17303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3692845..3693028 | 96..279 | 100 | <- | Minus |
2L | 3693090..3693183 | 1..95 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:18 Download gff for
BS17303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3692845..3693028 | 96..279 | 100 | <- | Minus |
arm_2L | 3693090..3693183 | 1..95 | 94 | | Minus |
BS17303.pep Sequence
Translation from 16 to 282
> BS17303.pep
MKYIGFVAIAFLLSLSGSRLWVHAKPEMCQQPSSMVGMAQDGAACMAFMP
AWTYDASKNACTEFIFGGCGGNSNQFSTKSECEKACKD*
BS17303.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-PA | 88 | CG3513-PA | 1..88 | 1..88 | 479 | 100 | Plus |
CG16713-PA | 82 | CG16713-PA | 8..80 | 6..86 | 168 | 40.2 | Plus |
CG16712-PB | 82 | CG16712-PB | 1..82 | 1..88 | 158 | 37.5 | Plus |
CG16712-PA | 82 | CG16712-PA | 1..82 | 1..88 | 158 | 37.5 | Plus |
CG2816-PB | 84 | CG2816-PB | 40..83 | 45..88 | 141 | 50 | Plus |