Clone BS17303 Report

Search the DGRC for BS17303

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG3513-RA
Protein status:BS17303.pep: full length peptide match
Sequenced Size:299

Clone Sequence Records

BS17303.complete Sequence

299 bp assembled on 2010-02-09

GenBank Submission: KX806542

> BS17303.complete
GAAGTTATCAGTCGACATGAAGTATATCGGCTTTGTCGCCATCGCCTTTT
TGCTGAGTCTGTCCGGCAGTCGTTTATGGGTGCATGCCAAGCCGGAGATG
TGCCAGCAGCCCTCTTCGATGGTGGGCATGGCGCAGGATGGAGCTGCCTG
CATGGCTTTTATGCCGGCCTGGACCTATGATGCCTCCAAAAACGCCTGCA
CCGAGTTCATTTTCGGTGGCTGCGGTGGAAACTCCAATCAGTTCTCTACC
AAGAGTGAATGCGAAAAGGCCTGCAAGGACTAAAAGCTTTCTAGACCAT

BS17303.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3513-RA 267 CG3513-PA 1..267 17..283 1335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3513-RA 423 CG3513-RA 15..282 17..284 1340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3692840..3693029 284..95 950 100 Minus
2L 23513712 2L 3693090..3693168 95..17 395 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:35:20 has no hits.

BS17303.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:47 Download gff for BS17303.complete
Subject Subject Range Query Range Percent Splice Strand
CG3513-RA 1..267 17..283 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:24 Download gff for BS17303.complete
Subject Subject Range Query Range Percent Splice Strand
CG3513-RA 1..265 17..281 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:15 Download gff for BS17303.complete
Subject Subject Range Query Range Percent Splice Strand
CG3513-RA 15..279 17..281 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:47 Download gff for BS17303.complete
Subject Subject Range Query Range Percent Splice Strand
CG3513-RA 1..267 17..283 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:17 Download gff for BS17303.complete
Subject Subject Range Query Range Percent Splice Strand
CG3513-RA 15..279 17..281 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:17 Download gff for BS17303.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3692843..3693028 96..281 100 <- Minus
2L 3693090..3693168 17..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:15 Download gff for BS17303.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3692843..3693028 96..281 100 <- Minus
arm_2L 3693090..3693168 17..95 100   Minus

BS17303.3prime Sequence

297 bp (297 high quality bases) assembled on 2007-05-15

> BS17303.3prime
ATGGTCTAGAAAGCTTTTAGTCCTTGCAGGCCTTTTCGCATTCACTCTTG
GTAGAGAACTGATTGGAGTTTCCACCGCAGCCACCGAAAATGAACTCGGT
GCAGGCGTTTTTGGAGGCATCATAGGTCCAGGCCGGCATAAAAGCCATGC
AGGCAGCTCCATCCTGCGCCATGCCCACCATCGAAGAGGGCTGCTGGCAC
ATCTCCGGCTTGGCATGCACCCATAAACGACTGCCGGACAGACTCAGCAA
AAAGGCGATGGCGACAAAGCCGATATACTTCATGTCGACTGATAACT

BS17303.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3513-PA 267 CG3513-RA 1..267 283..17 1335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3513-RA 423 CG3513-RA 15..282 283..16 1340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3692840..3693029 16..205 950 100 Plus
2L 23513712 2L 3693090..3693168 205..283 395 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:36:14 has no hits.

BS17303.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:21 Download gff for BS17303.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3513-PA 1..267 17..283 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:33 Download gff for BS17303.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3513-RA 2..282 16..297 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:31 Download gff for BS17303.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3513-RA 2..282 16..297 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:31 Download gff for BS17303.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3692845..3693028 21..204 100 <- Plus
2L 3693090..3693181 205..297 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:33 Download gff for BS17303.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3692845..3693028 21..204 100 <- Plus
arm_2L 3693090..3693181 205..297 94   Plus

BS17303.5prime Sequence

297 bp (297 high quality bases) assembled on 2007-05-15

> BS17303.5prime
GAAGTTATCAGTCGACATGAAGTATATCGGCTTTGTCGCCATCGCCTTTT
TGCTGAGTCTGTCCGGCAGTCGTTTATGGGTGCATGCCAAGCCGGAGATG
TGCCAGCAGCCCTCTTCGATGGTGGGCATGGCGCAGGATGGAGCTGCCTG
CATGGCTTTTATGCCGGCCTGGACCTATGATGCCTCCAAAAACGCCTGCA
CCGAGTTCATTTTCGGTGGCTGCGGTGGAAACTCCAATCAGTTCTCTACC
AAGAGTGAATGCGAAAAGGCCTGCAAGGACTAAAAGCTTTCTAGACC

BS17303.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3513-PA 267 CG3513-RA 1..267 17..283 1335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3513-RA 423 CG3513-RA 15..282 17..284 1340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3692840..3693029 284..95 950 100 Minus
2L 23513712 2L 3693090..3693168 95..17 395 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:58:28 has no hits.

BS17303.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:12 Download gff for BS17303.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3513-PA 1..267 17..283 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:18 Download gff for BS17303.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3513-RA 1..282 2..284 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:30 Download gff for BS17303.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3513-RA 1..282 2..284 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:30 Download gff for BS17303.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3692845..3693028 96..279 100 <- Minus
2L 3693090..3693183 1..95 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:18 Download gff for BS17303.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3692845..3693028 96..279 100 <- Minus
arm_2L 3693090..3693183 1..95 94   Minus

BS17303.pep Sequence

Translation from 16 to 282

> BS17303.pep
MKYIGFVAIAFLLSLSGSRLWVHAKPEMCQQPSSMVGMAQDGAACMAFMP
AWTYDASKNACTEFIFGGCGGNSNQFSTKSECEKACKD*

BS17303.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3513-PA 88 CG3513-PA 1..88 1..88 479 100 Plus
CG16713-PA 82 CG16713-PA 8..80 6..86 168 40.2 Plus
CG16712-PB 82 CG16712-PB 1..82 1..88 158 37.5 Plus
CG16712-PA 82 CG16712-PA 1..82 1..88 158 37.5 Plus
CG2816-PB 84 CG2816-PB 40..83 45..88 141 50 Plus