Clone Sequence Records
BS17307.complete Sequence
524 bp assembled on 2010-02-09
GenBank Submission: KX800270
> BS17307.complete
GAAGTTATCAGTCGACATGCGTAAGATGCAAGTTCTAGTTCAGACGAGCG
ACGGCAAGAAGACGGTTTACGATGTGGATCGCTTCGGAACGGTGGCCAAC
CTGAAGGCACGGATCGGGCGAGCCATGTCCGTGCCCATGGGCTTCAGTCG
GCTGTCCTACAAGGGTCGCGAGCTGTCCAATCAGAGCATACTGGAGGATG
TGGGCCATAAGTCCATTCTGGATCTCACCTGGAAGCCGGTCGTCCTGACG
CCCAAGCAATTGCGCGAAAAGAAGATTGGCAAGTTTAGCAAGTTCGGCTA
TGGCAGGAAAAACGATAGTGGTGAACATATGTCTACATTGATCGGCGGTT
ACCAGCAACGCATAGATCTGGAAAGTGACGATGATGAACTGGAGGCACAG
GACTTGACTGAACTCGATTTGTTGTCCCTTAACTCCGATGATTCACTGGT
CAACAACCAGACGGAGCTAGAGCCGATTGCTCCATTGAATTTCTCTGGAT
CTGATTAAAAGCTTTCTAGACCAT
BS17307.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-RA | 492 | CG12725-PA | 1..492 | 17..508 | 2460 | 100 | Plus |
CG33223-RB | 555 | CG33223-PB | 1..330 | 17..361 | 810 | 84.2 | Plus |
CG33223-RA | 555 | CG33223-PA | 1..330 | 17..361 | 810 | 84.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-RA | 1025 | CG12725-RA | 150..641 | 17..508 | 2460 | 100 | Plus |
CG33223-RB | 689 | CG33223-RB | 67..396 | 17..361 | 810 | 84.2 | Plus |
CG33223-RA | 1114 | CG33223-RA | 492..821 | 17..361 | 810 | 84.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13402223..13402714 | 508..17 | 2460 | 100 | Minus |
X | 23542271 | X | 8465983..8466312 | 361..17 | 810 | 84.2 | Minus |
X | 23542271 | X | 8457319..8457560 | 255..17 | 800 | 89.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:02:07 has no hits.
BS17307.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:42 Download gff for
BS17307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 1..492 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:21 Download gff for
BS17307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 1..490 | 17..506 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:30 Download gff for
BS17307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 150..639 | 17..506 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:42 Download gff for
BS17307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 1..492 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:13 Download gff for
BS17307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 150..639 | 17..506 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:13 Download gff for
BS17307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13402225..13402714 | 17..506 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:30 Download gff for
BS17307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13296258..13296747 | 17..506 | 100 | | Minus |
BS17307.3prime Sequence
522 bp (522 high quality bases) assembled on 2007-05-15
> BS17307.3prime
ATGGTCTAGAAAGCTTTTAATCAGATCCAGAGAAATTCAATGGAGCAATC
GGCTCTAGCTCCGTCTGGTTGTTGACCAGTGAATCATCGGAGTTAAGGGA
CAACAAATCGAGTTCAGTCAAGTCCTGTGCCTCCAGTTCATCATCGTCAC
TTTCCAGATCTATGCGTTGCTGGTAACCGCCGATCAATGTAGACATATGT
TCACCACTATCGTTTTTCCTGCCATAGCCGAACTTGCTAAACTTGCCAAT
CTTCTTTTCGCGCAATTGCTTGGGCGTCAGGACGACCGGCTTCCAGGTGA
GATCCAGAATGGACTTATGGCCCACATCCTCCAGTATGCTCTGATTGGAC
AGCTCGCGACCCTTGTAGGACAGCCGACTGAAGCCCATGGGCACGGACAT
GGCTCGCCCGATCCGTGCCTTCAGGTTGGCCACCGTTCCGAAGCGATCCA
CATCGTAAACCGTCTTCTTGCCGTCGCTCGTCTGAACTAGAACTTGCATC
TTACGCATGTCGACTGATAACT
BS17307.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-PA | 492 | CG12725-RA | 1..492 | 508..17 | 2460 | 100 | Minus |
CG33223-PA | 555 | CG33223-RA | 22..183 | 487..326 | 535 | 93.2 | Minus |
CG32713-PA | 555 | CG32713-RA | 22..183 | 487..326 | 510 | 92.5 | Minus |
CG33223-PA | 555 | CG33223-RA | 205..237 | 307..275 | 165 | 100 | Minus |
CG32713-PA | 555 | CG32713-RA | 205..237 | 307..275 | 165 | 100 | Minus |
CG33223-PA | 555 | CG33223-RA | 251..292 | 246..205 | 135 | 92.8 | Minus |
CG32713-PA | 555 | CG32713-RA | 251..292 | 246..205 | 135 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-RA | 1025 | CG12725-RA | 150..641 | 508..17 | 2460 | 100 | Minus |
CG33223-RB | 689 | CG33223-RB | 67..396 | 508..164 | 900 | 85.1 | Minus |
CG33223-RA | 1114 | CG33223-RA | 492..821 | 508..164 | 900 | 85.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13402223..13402714 | 17..508 | 2460 | 100 | Plus |
X | 23542271 | X | 8465983..8466312 | 164..508 | 810 | 84.2 | Plus |
X | 23542271 | X | 8457319..8457560 | 270..508 | 800 | 89.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:05:16 has no hits.
BS17307.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:08 Download gff for
BS17307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-PA | 1..492 | 17..508 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:21 Download gff for
BS17307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 150..645 | 14..508 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:47 Download gff for
BS17307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 150..645 | 14..508 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:47 Download gff for
BS17307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13402219..13402714 | 14..508 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:21 Download gff for
BS17307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13296252..13296747 | 14..508 | 99 | | Plus |
BS17307.5prime Sequence
522 bp (522 high quality bases) assembled on 2007-05-15
> BS17307.5prime
GAAGTTATCAGTCGACATGCGTAAGATGCAAGTTCTAGTTCAGACGAGCG
ACGGCAAGAAGACGGTTTACGATGTGGATCGCTTCGGAACGGTGGCCAAC
CTGAAGGCACGGATCGGGCGAGCCATGTCCGTGCCCATGGGCTTCAGTCG
GCTGTCCTACAAGGGTCGCGAGCTGTCCAATCAGAGCATACTGGAGGATG
TGGGCCATAAGTCCATTCTGGATCTCACCTGGAAGCCGGTCGTCCTGACG
CCCAAGCAATTGCGCGAAAAGAAGATTGGCAAGTTTAGCAAGTTCGGCTA
TGGCAGGAAAAACGATAGTGGTGAACATATGTCTACATTGATCGGCGGTT
ACCAGCAACGCATAGATCTGGAAAGTGACGATGATGAACTGGAGGCACAG
GACTTGACTGAACTCGATTTGTTGTCCCTTAACTCCGATGATTCACTGGT
CAACAACCAGACGGAGCTAGAGCCGATTGCTCCATTGAATTTCTCTGGAT
CTGATTAAAAGCTTTCTAGACC
BS17307.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-PA | 492 | CG12725-RA | 1..492 | 17..508 | 2460 | 100 | Plus |
CG33223-PA | 555 | CG33223-RA | 22..183 | 38..199 | 535 | 93.2 | Plus |
CG32713-PA | 555 | CG32713-RA | 22..183 | 38..199 | 510 | 92.5 | Plus |
CG33223-PA | 555 | CG33223-RA | 205..237 | 218..250 | 165 | 100 | Plus |
CG32713-PA | 555 | CG32713-RA | 205..237 | 218..250 | 165 | 100 | Plus |
CG33223-PA | 555 | CG33223-RA | 251..292 | 279..320 | 135 | 92.8 | Plus |
CG32713-PA | 555 | CG32713-RA | 251..292 | 279..320 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-RA | 1025 | CG12725-RA | 150..641 | 17..508 | 2460 | 100 | Plus |
CG33223-RB | 689 | CG33223-RB | 67..396 | 17..361 | 900 | 85.1 | Plus |
CG33223-RA | 1114 | CG33223-RA | 492..821 | 17..361 | 900 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13402223..13402714 | 508..17 | 2460 | 100 | Minus |
X | 23542271 | X | 8465983..8466312 | 361..17 | 810 | 84.2 | Minus |
X | 23542271 | X | 8457319..8457560 | 255..17 | 800 | 89.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:27:08 has no hits.
BS17307.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:59 Download gff for
BS17307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-PA | 1..492 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:50:05 Download gff for
BS17307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 150..645 | 17..511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:49:25 Download gff for
BS17307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 150..645 | 17..511 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:49:25 Download gff for
BS17307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13402219..13402714 | 17..511 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:05 Download gff for
BS17307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13296252..13296747 | 17..511 | 99 | | Minus |
BS17307.pep Sequence
Translation from 16 to 507
> BS17307.pep
MRKMQVLVQTSDGKKTVYDVDRFGTVANLKARIGRAMSVPMGFSRLSYKG
RELSNQSILEDVGHKSILDLTWKPVVLTPKQLREKKIGKFSKFGYGRKND
SGEHMSTLIGGYQQRIDLESDDDELEAQDLTELDLLSLNSDDSLVNNQTE
LEPIAPLNFSGSD*
BS17307.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-PA | 163 | CG12725-PA | 1..163 | 1..163 | 827 | 100 | Plus |
CG33223-PB | 184 | CG33223-PB | 1..178 | 1..162 | 461 | 60.3 | Plus |
CG33223-PA | 184 | CG33223-PA | 1..178 | 1..162 | 461 | 60.3 | Plus |
CG32713-PB | 184 | CG32713-PB | 1..178 | 1..162 | 461 | 60.3 | Plus |
CG32713-PA | 184 | CG32713-PA | 1..178 | 1..162 | 461 | 60.3 | Plus |