Clone BS17307 Report

Search the DGRC for BS17307

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG12725-RA
Protein status:BS17307.pep: full length peptide match
Sequenced Size:524

Clone Sequence Records

BS17307.complete Sequence

524 bp assembled on 2010-02-09

GenBank Submission: KX800270

> BS17307.complete
GAAGTTATCAGTCGACATGCGTAAGATGCAAGTTCTAGTTCAGACGAGCG
ACGGCAAGAAGACGGTTTACGATGTGGATCGCTTCGGAACGGTGGCCAAC
CTGAAGGCACGGATCGGGCGAGCCATGTCCGTGCCCATGGGCTTCAGTCG
GCTGTCCTACAAGGGTCGCGAGCTGTCCAATCAGAGCATACTGGAGGATG
TGGGCCATAAGTCCATTCTGGATCTCACCTGGAAGCCGGTCGTCCTGACG
CCCAAGCAATTGCGCGAAAAGAAGATTGGCAAGTTTAGCAAGTTCGGCTA
TGGCAGGAAAAACGATAGTGGTGAACATATGTCTACATTGATCGGCGGTT
ACCAGCAACGCATAGATCTGGAAAGTGACGATGATGAACTGGAGGCACAG
GACTTGACTGAACTCGATTTGTTGTCCCTTAACTCCGATGATTCACTGGT
CAACAACCAGACGGAGCTAGAGCCGATTGCTCCATTGAATTTCTCTGGAT
CTGATTAAAAGCTTTCTAGACCAT

BS17307.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-RA 492 CG12725-PA 1..492 17..508 2460 100 Plus
CG33223-RB 555 CG33223-PB 1..330 17..361 810 84.2 Plus
CG33223-RA 555 CG33223-PA 1..330 17..361 810 84.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-RA 1025 CG12725-RA 150..641 17..508 2460 100 Plus
CG33223-RB 689 CG33223-RB 67..396 17..361 810 84.2 Plus
CG33223-RA 1114 CG33223-RA 492..821 17..361 810 84.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13402223..13402714 508..17 2460 100 Minus
X 23542271 X 8465983..8466312 361..17 810 84.2 Minus
X 23542271 X 8457319..8457560 255..17 800 89.7 Minus
Blast to na_te.dros performed on 2014-11-28 03:02:07 has no hits.

BS17307.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:42 Download gff for BS17307.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..492 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:21 Download gff for BS17307.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..490 17..506 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:30 Download gff for BS17307.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 150..639 17..506 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:42 Download gff for BS17307.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..492 17..508 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:13 Download gff for BS17307.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 150..639 17..506 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:13 Download gff for BS17307.complete
Subject Subject Range Query Range Percent Splice Strand
X 13402225..13402714 17..506 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:30 Download gff for BS17307.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13296258..13296747 17..506 100   Minus

BS17307.3prime Sequence

522 bp (522 high quality bases) assembled on 2007-05-15

> BS17307.3prime
ATGGTCTAGAAAGCTTTTAATCAGATCCAGAGAAATTCAATGGAGCAATC
GGCTCTAGCTCCGTCTGGTTGTTGACCAGTGAATCATCGGAGTTAAGGGA
CAACAAATCGAGTTCAGTCAAGTCCTGTGCCTCCAGTTCATCATCGTCAC
TTTCCAGATCTATGCGTTGCTGGTAACCGCCGATCAATGTAGACATATGT
TCACCACTATCGTTTTTCCTGCCATAGCCGAACTTGCTAAACTTGCCAAT
CTTCTTTTCGCGCAATTGCTTGGGCGTCAGGACGACCGGCTTCCAGGTGA
GATCCAGAATGGACTTATGGCCCACATCCTCCAGTATGCTCTGATTGGAC
AGCTCGCGACCCTTGTAGGACAGCCGACTGAAGCCCATGGGCACGGACAT
GGCTCGCCCGATCCGTGCCTTCAGGTTGGCCACCGTTCCGAAGCGATCCA
CATCGTAAACCGTCTTCTTGCCGTCGCTCGTCTGAACTAGAACTTGCATC
TTACGCATGTCGACTGATAACT

BS17307.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-PA 492 CG12725-RA 1..492 508..17 2460 100 Minus
CG33223-PA 555 CG33223-RA 22..183 487..326 535 93.2 Minus
CG32713-PA 555 CG32713-RA 22..183 487..326 510 92.5 Minus
CG33223-PA 555 CG33223-RA 205..237 307..275 165 100 Minus
CG32713-PA 555 CG32713-RA 205..237 307..275 165 100 Minus
CG33223-PA 555 CG33223-RA 251..292 246..205 135 92.8 Minus
CG32713-PA 555 CG32713-RA 251..292 246..205 135 92.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-RA 1025 CG12725-RA 150..641 508..17 2460 100 Minus
CG33223-RB 689 CG33223-RB 67..396 508..164 900 85.1 Minus
CG33223-RA 1114 CG33223-RA 492..821 508..164 900 85.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13402223..13402714 17..508 2460 100 Plus
X 23542271 X 8465983..8466312 164..508 810 84.2 Plus
X 23542271 X 8457319..8457560 270..508 800 89.7 Plus
Blast to na_te.dros performed on 2015-02-13 12:05:16 has no hits.

BS17307.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:08 Download gff for BS17307.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12725-PA 1..492 17..508 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:21 Download gff for BS17307.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 150..645 14..508 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:47 Download gff for BS17307.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 150..645 14..508 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:47 Download gff for BS17307.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13402219..13402714 14..508 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:21 Download gff for BS17307.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13296252..13296747 14..508 99   Plus

BS17307.5prime Sequence

522 bp (522 high quality bases) assembled on 2007-05-15

> BS17307.5prime
GAAGTTATCAGTCGACATGCGTAAGATGCAAGTTCTAGTTCAGACGAGCG
ACGGCAAGAAGACGGTTTACGATGTGGATCGCTTCGGAACGGTGGCCAAC
CTGAAGGCACGGATCGGGCGAGCCATGTCCGTGCCCATGGGCTTCAGTCG
GCTGTCCTACAAGGGTCGCGAGCTGTCCAATCAGAGCATACTGGAGGATG
TGGGCCATAAGTCCATTCTGGATCTCACCTGGAAGCCGGTCGTCCTGACG
CCCAAGCAATTGCGCGAAAAGAAGATTGGCAAGTTTAGCAAGTTCGGCTA
TGGCAGGAAAAACGATAGTGGTGAACATATGTCTACATTGATCGGCGGTT
ACCAGCAACGCATAGATCTGGAAAGTGACGATGATGAACTGGAGGCACAG
GACTTGACTGAACTCGATTTGTTGTCCCTTAACTCCGATGATTCACTGGT
CAACAACCAGACGGAGCTAGAGCCGATTGCTCCATTGAATTTCTCTGGAT
CTGATTAAAAGCTTTCTAGACC

BS17307.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-PA 492 CG12725-RA 1..492 17..508 2460 100 Plus
CG33223-PA 555 CG33223-RA 22..183 38..199 535 93.2 Plus
CG32713-PA 555 CG32713-RA 22..183 38..199 510 92.5 Plus
CG33223-PA 555 CG33223-RA 205..237 218..250 165 100 Plus
CG32713-PA 555 CG32713-RA 205..237 218..250 165 100 Plus
CG33223-PA 555 CG33223-RA 251..292 279..320 135 92.8 Plus
CG32713-PA 555 CG32713-RA 251..292 279..320 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-RA 1025 CG12725-RA 150..641 17..508 2460 100 Plus
CG33223-RB 689 CG33223-RB 67..396 17..361 900 85.1 Plus
CG33223-RA 1114 CG33223-RA 492..821 17..361 900 85.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13402223..13402714 508..17 2460 100 Minus
X 23542271 X 8465983..8466312 361..17 810 84.2 Minus
X 23542271 X 8457319..8457560 255..17 800 89.7 Minus
Blast to na_te.dros performed on 2015-02-11 16:27:08 has no hits.

BS17307.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:23:59 Download gff for BS17307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12725-PA 1..492 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:50:05 Download gff for BS17307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 150..645 17..511 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:49:25 Download gff for BS17307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 150..645 17..511 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:49:25 Download gff for BS17307.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13402219..13402714 17..511 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:05 Download gff for BS17307.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13296252..13296747 17..511 99   Minus

BS17307.pep Sequence

Translation from 16 to 507

> BS17307.pep
MRKMQVLVQTSDGKKTVYDVDRFGTVANLKARIGRAMSVPMGFSRLSYKG
RELSNQSILEDVGHKSILDLTWKPVVLTPKQLREKKIGKFSKFGYGRKND
SGEHMSTLIGGYQQRIDLESDDDELEAQDLTELDLLSLNSDDSLVNNQTE
LEPIAPLNFSGSD*

BS17307.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-PA 163 CG12725-PA 1..163 1..163 827 100 Plus
CG33223-PB 184 CG33223-PB 1..178 1..162 461 60.3 Plus
CG33223-PA 184 CG33223-PA 1..178 1..162 461 60.3 Plus
CG32713-PB 184 CG32713-PB 1..178 1..162 461 60.3 Plus
CG32713-PA 184 CG32713-PA 1..178 1..162 461 60.3 Plus