Clone BS17308 Report

Search the DGRC for BS17308

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG13323-RA
Protein status:BS17308.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17308.3prime Sequence

369 bp (369 high quality bases) assembled on 2007-05-15

> BS17308.3prime
ATGGTCTAGAAAGCTTTTAACGACCCCAGATCTCGACGGTGGAGTTGATT
CCGCGGTTCACCTGACCACGAAGATTCACGGTGGCGAAGCGATAGCCCGG
ACCGCCGGAATAGAGGCTAGGAGATGCGCCGGAGTTGTTCTTAAAGTTGT
CGTAGACGATCACGGCGGAGATGTTGTAGAATCCGGCGGGATAGTTCACG
TTCACGTTCCAGTAGTTGTTCTTGATCGGATTGCGGACTTCCGTGGTGCG
GGACAGCAGGTAGTCGTTGTTATTGCGACGCCCCCAGGTGGCGCCGTAGG
CGTGGCAGCCAAGGATCACGGCCAGGACAACTGAGAGGATGAGCAGAAGA
CGCATGTCGACTGATAACT

BS17308.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13323-PA 339 CG13323-RA 1..339 355..17 1695 100 Minus
CG13324-PA 339 CG13324-RA 172..339 184..17 665 95.8 Minus
CG13324-PA 339 CG13324-RA 1..77 355..279 335 97.4 Minus
CG13324-PA 339 CG13324-RA 106..164 250..192 245 96.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13323-RB 2562 CG13323-RB 39..379 357..17 1705 100 Minus
CG13323-RA 521 CG13323-RA 39..379 357..17 1705 100 Minus
CG13324-RA 511 CG13324-RA 37..377 357..17 1315 92.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13046878..13047218 17..357 1705 100 Plus
2R 25286936 2R 13049280..13049620 17..357 1315 92.4 Plus
Blast to na_te.dros performed on 2015-02-11 02:49:04 has no hits.

BS17308.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:17 Download gff for BS17308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13323-PA 1..339 17..355 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:59 Download gff for BS17308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13323-RA 33..379 17..363 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:49:48 Download gff for BS17308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13323-RA 33..379 17..363 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:49:48 Download gff for BS17308.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13046878..13047224 17..363 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:59 Download gff for BS17308.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8934383..8934729 17..363 99   Plus

BS17308.5prime Sequence

369 bp (369 high quality bases) assembled on 2007-05-15

> BS17308.5prime
GAAGTTATCAGTCGACATGCGTCTTCTGCTCATCCTCTCAGTTGTCCTGG
CCGTGATCCTTGGCTGCCACGCCTACGGCGCCACCTGGGGGCGTCGCAAT
AACAACGACTACCTGCTGTCCCGCACCACGGAAGTCCGCAATCCGATCAA
GAACAACTACTGGAACGTGAACGTGAACTATCCCGCCGGATTCTACAACA
TCTCCGCCGTGATCGTCTACGACAACTTTAAGAACAACTCCGGCGCATCT
CCTAGCCTCTATTCCGGCGGTCCGGGCTATCGCTTCGCCACCGTGAATCT
TCGTGGTCAGGTGAACCGCGGAATCAACTCCACCGTCGAGATCTGGGGTC
GTTAAAAGCTTTCTAGACC

BS17308.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13323-PA 339 CG13323-RA 1..339 17..355 1695 100 Plus
CG13324-PA 339 CG13324-RA 172..339 188..355 665 95.8 Plus
CG13324-PA 339 CG13324-RA 1..77 17..93 335 97.4 Plus
CG13324-PA 339 CG13324-RA 106..164 122..180 245 96.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13323-RB 2562 CG13323-RB 39..379 15..355 1705 100 Plus
CG13323-RA 521 CG13323-RA 39..379 15..355 1705 100 Plus
CG13324-RA 511 CG13324-RA 37..377 15..355 1315 92.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13046878..13047218 355..15 1705 100 Minus
2R 25286936 2R 13049280..13049620 355..15 1315 92.4 Minus
Blast to na_te.dros performed on 2015-02-12 16:33:52 has no hits.

BS17308.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:08 Download gff for BS17308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13323-PA 1..339 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:07 Download gff for BS17308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13323-RA 33..379 9..355 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:45 Download gff for BS17308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13323-RA 33..379 9..355 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:45 Download gff for BS17308.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13046878..13047224 9..355 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:07 Download gff for BS17308.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8934383..8934729 9..355 99   Minus

BS17308.complete Sequence

371 bp assembled on 2007-05-30

GenBank Submission: KX800562

> BS17308.complete
GAAGTTATCAGTCGACATGCGTCTTCTGCTCATCCTCTCAGTTGTCCTGG
CCGTGATCCTTGGCTGCCACGCCTACGGCGCCACCTGGGGGCGTCGCAAT
AACAACGACTACCTGCTGTCCCGCACCACGGAAGTCCGCAATCCGATCAA
GAACAACTACTGGAACGTGAACGTGAACTATCCCGCCGGATTCTACAACA
TCTCCGCCGTGATCGTCTACGACAACTTTAAGAACAACTCCGGCGCATCT
CCTAGCCTCTATTCCGGCGGTCCGGGCTATCGCTTCGCCACCGTGAATCT
TCGTGGTCAGGTGAACCGCGGAATCAACTCCACCGTCGAGATCTGGGGTC
GTTAAAAGCTTTCTAGACCAT

BS17308.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13323-RB 339 CG13323-PB 1..339 17..355 1695 100 Plus
CG13323-RA 339 CG13323-PA 1..339 17..355 1695 100 Plus
CG13324-RA 339 CG13324-PA 1..339 17..355 1305 92.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13323-RB 2562 CG13323-RB 39..379 15..355 1705 100 Plus
CG13323-RA 521 CG13323-RA 39..379 15..355 1705 100 Plus
CG13324-RA 511 CG13324-RA 37..377 15..355 1315 92.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13046878..13047218 355..15 1705 100 Minus
2R 25286936 2R 13049280..13049620 355..15 1315 92.4 Minus
Blast to na_te.dros performed on 2014-11-27 14:01:04 has no hits.

BS17308.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:24 Download gff for BS17308.complete
Subject Subject Range Query Range Percent Splice Strand
CG13323-RA 1..339 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:41 Download gff for BS17308.complete
Subject Subject Range Query Range Percent Splice Strand
CG13323-RA 65..411 9..355 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:24 Download gff for BS17308.complete
Subject Subject Range Query Range Percent Splice Strand
CG13323-RA 41..377 17..353 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:24 Download gff for BS17308.complete
Subject Subject Range Query Range Percent Splice Strand
CG13323-RA 65..411 9..355 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:30 Download gff for BS17308.complete
Subject Subject Range Query Range Percent Splice Strand
CG13323-RA 41..377 17..353 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:30 Download gff for BS17308.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13046880..13047216 17..353 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:24 Download gff for BS17308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8934385..8934721 17..353 100   Minus

BS17308.pep Sequence

Translation from 16 to 354

> BS17308.pep
MRLLLILSVVLAVILGCHAYGATWGRRNNNDYLLSRTTEVRNPIKNNYWN
VNVNYPAGFYNISAVIVYDNFKNNSGASPSLYSGGPGYRFATVNLRGQVN
RGINSTVEIWGR*

BS17308.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13323-PB 112 CG13323-PB 1..112 1..112 598 100 Plus
CG13323-PA 112 CG13323-PA 1..112 1..112 598 100 Plus
CG13324-PA 112 CG13324-PA 1..112 1..112 562 94.6 Plus
CG31789-PC 117 CG31789-PC 4..114 1..110 145 32.5 Plus
CG31789-PB 117 CG31789-PB 4..114 1..110 145 32.5 Plus