Clone Sequence Records
BS17308.3prime Sequence
369 bp (369 high quality bases) assembled on 2007-05-15
> BS17308.3prime
ATGGTCTAGAAAGCTTTTAACGACCCCAGATCTCGACGGTGGAGTTGATT
CCGCGGTTCACCTGACCACGAAGATTCACGGTGGCGAAGCGATAGCCCGG
ACCGCCGGAATAGAGGCTAGGAGATGCGCCGGAGTTGTTCTTAAAGTTGT
CGTAGACGATCACGGCGGAGATGTTGTAGAATCCGGCGGGATAGTTCACG
TTCACGTTCCAGTAGTTGTTCTTGATCGGATTGCGGACTTCCGTGGTGCG
GGACAGCAGGTAGTCGTTGTTATTGCGACGCCCCCAGGTGGCGCCGTAGG
CGTGGCAGCCAAGGATCACGGCCAGGACAACTGAGAGGATGAGCAGAAGA
CGCATGTCGACTGATAACT
BS17308.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-PA | 339 | CG13323-RA | 1..339 | 355..17 | 1695 | 100 | Minus |
CG13324-PA | 339 | CG13324-RA | 172..339 | 184..17 | 665 | 95.8 | Minus |
CG13324-PA | 339 | CG13324-RA | 1..77 | 355..279 | 335 | 97.4 | Minus |
CG13324-PA | 339 | CG13324-RA | 106..164 | 250..192 | 245 | 96.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-RB | 2562 | CG13323-RB | 39..379 | 357..17 | 1705 | 100 | Minus |
CG13323-RA | 521 | CG13323-RA | 39..379 | 357..17 | 1705 | 100 | Minus |
CG13324-RA | 511 | CG13324-RA | 37..377 | 357..17 | 1315 | 92.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13046878..13047218 | 17..357 | 1705 | 100 | Plus |
2R | 25286936 | 2R | 13049280..13049620 | 17..357 | 1315 | 92.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:49:04 has no hits.
BS17308.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:17 Download gff for
BS17308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-PA | 1..339 | 17..355 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:59 Download gff for
BS17308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 33..379 | 17..363 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:49:48 Download gff for
BS17308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 33..379 | 17..363 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:49:48 Download gff for
BS17308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13046878..13047224 | 17..363 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:59 Download gff for
BS17308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8934383..8934729 | 17..363 | 99 | | Plus |
BS17308.5prime Sequence
369 bp (369 high quality bases) assembled on 2007-05-15
> BS17308.5prime
GAAGTTATCAGTCGACATGCGTCTTCTGCTCATCCTCTCAGTTGTCCTGG
CCGTGATCCTTGGCTGCCACGCCTACGGCGCCACCTGGGGGCGTCGCAAT
AACAACGACTACCTGCTGTCCCGCACCACGGAAGTCCGCAATCCGATCAA
GAACAACTACTGGAACGTGAACGTGAACTATCCCGCCGGATTCTACAACA
TCTCCGCCGTGATCGTCTACGACAACTTTAAGAACAACTCCGGCGCATCT
CCTAGCCTCTATTCCGGCGGTCCGGGCTATCGCTTCGCCACCGTGAATCT
TCGTGGTCAGGTGAACCGCGGAATCAACTCCACCGTCGAGATCTGGGGTC
GTTAAAAGCTTTCTAGACC
BS17308.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-PA | 339 | CG13323-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
CG13324-PA | 339 | CG13324-RA | 172..339 | 188..355 | 665 | 95.8 | Plus |
CG13324-PA | 339 | CG13324-RA | 1..77 | 17..93 | 335 | 97.4 | Plus |
CG13324-PA | 339 | CG13324-RA | 106..164 | 122..180 | 245 | 96.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-RB | 2562 | CG13323-RB | 39..379 | 15..355 | 1705 | 100 | Plus |
CG13323-RA | 521 | CG13323-RA | 39..379 | 15..355 | 1705 | 100 | Plus |
CG13324-RA | 511 | CG13324-RA | 37..377 | 15..355 | 1315 | 92.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13046878..13047218 | 355..15 | 1705 | 100 | Minus |
2R | 25286936 | 2R | 13049280..13049620 | 355..15 | 1315 | 92.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:33:52 has no hits.
BS17308.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:08 Download gff for
BS17308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-PA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:07 Download gff for
BS17308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 33..379 | 9..355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:45 Download gff for
BS17308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 33..379 | 9..355 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:45 Download gff for
BS17308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13046878..13047224 | 9..355 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:07 Download gff for
BS17308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8934383..8934729 | 9..355 | 99 | | Minus |
BS17308.complete Sequence
371 bp assembled on 2007-05-30
GenBank Submission: KX800562
> BS17308.complete
GAAGTTATCAGTCGACATGCGTCTTCTGCTCATCCTCTCAGTTGTCCTGG
CCGTGATCCTTGGCTGCCACGCCTACGGCGCCACCTGGGGGCGTCGCAAT
AACAACGACTACCTGCTGTCCCGCACCACGGAAGTCCGCAATCCGATCAA
GAACAACTACTGGAACGTGAACGTGAACTATCCCGCCGGATTCTACAACA
TCTCCGCCGTGATCGTCTACGACAACTTTAAGAACAACTCCGGCGCATCT
CCTAGCCTCTATTCCGGCGGTCCGGGCTATCGCTTCGCCACCGTGAATCT
TCGTGGTCAGGTGAACCGCGGAATCAACTCCACCGTCGAGATCTGGGGTC
GTTAAAAGCTTTCTAGACCAT
BS17308.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-RB | 339 | CG13323-PB | 1..339 | 17..355 | 1695 | 100 | Plus |
CG13323-RA | 339 | CG13323-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
CG13324-RA | 339 | CG13324-PA | 1..339 | 17..355 | 1305 | 92.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-RB | 2562 | CG13323-RB | 39..379 | 15..355 | 1705 | 100 | Plus |
CG13323-RA | 521 | CG13323-RA | 39..379 | 15..355 | 1705 | 100 | Plus |
CG13324-RA | 511 | CG13324-RA | 37..377 | 15..355 | 1315 | 92.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13046878..13047218 | 355..15 | 1705 | 100 | Minus |
2R | 25286936 | 2R | 13049280..13049620 | 355..15 | 1315 | 92.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:01:04 has no hits.
BS17308.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:24 Download gff for
BS17308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:41 Download gff for
BS17308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 65..411 | 9..355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:24 Download gff for
BS17308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 41..377 | 17..353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:24 Download gff for
BS17308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 65..411 | 9..355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:30 Download gff for
BS17308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 41..377 | 17..353 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:30 Download gff for
BS17308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13046880..13047216 | 17..353 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:24 Download gff for
BS17308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8934385..8934721 | 17..353 | 100 | | Minus |
BS17308.pep Sequence
Translation from 16 to 354
> BS17308.pep
MRLLLILSVVLAVILGCHAYGATWGRRNNNDYLLSRTTEVRNPIKNNYWN
VNVNYPAGFYNISAVIVYDNFKNNSGASPSLYSGGPGYRFATVNLRGQVN
RGINSTVEIWGR*
BS17308.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-PB | 112 | CG13323-PB | 1..112 | 1..112 | 598 | 100 | Plus |
CG13323-PA | 112 | CG13323-PA | 1..112 | 1..112 | 598 | 100 | Plus |
CG13324-PA | 112 | CG13324-PA | 1..112 | 1..112 | 562 | 94.6 | Plus |
CG31789-PC | 117 | CG31789-PC | 4..114 | 1..110 | 145 | 32.5 | Plus |
CG31789-PB | 117 | CG31789-PB | 4..114 | 1..110 | 145 | 32.5 | Plus |