Clone Sequence Records
BS17310.3prime Sequence
543 bp (543 high quality bases) assembled on 2007-05-15
> BS17310.3prime
ATGGTCTAGAAAGCTTCTAATCCTTGGATGCAGGCACAAAGTTTCCATAG
TCGCGTCTGACCTTCATGGGTGGTTCGTTATTGGGAGTATCATTTCTCTG
GTTATGATCATGGGAGCGCTTGTAGCCTCCAGATCCTCCGGACCCTCCGC
CTCCTTCGTACCGATTCCGGCGATCGATGTGATCGTATCTGTTGTTGCGC
CGGTTGTCCCTGAATCCCCTGTCCTGGTTGTTGTGGTAGCCAGCTCCTCC
TCGTCGCTGCCAGCCCCTGTCGCCGCCTCCTCTGCGATGTCCGTTGTAGC
GATTGTGGTAGGGATGACCACCGCCTCCTCCGCCCTGGAAGCCGCCTCCT
CCTCCGCCACCTCCCATCCAGTTCTCCACAATTGGCGGCTCCGGCACAGG
CTTGCTGCAGTGCGCCATGAACTCTGGGTCGTCGTCAGTGAAGCGGTCTG
CGAACTCAAGCTCGCAGGACTCCAGGAAGTTCAGGTCCCTTTCGACCAGA
CGGTTTATCTTTCGGTTGGGATCCACCATGTCGACTGATAACT
BS17310.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-PA | 513 | CG13807-RA | 1..513 | 529..17 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-RA | 636 | CG13807-RA | 55..567 | 529..17 | 2565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2262973..2263294 | 529..208 | 1610 | 100 | Minus |
3L | 28110227 | 3L | 2263355..2263546 | 208..17 | 960 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 16:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 2682..2729 | 262..216 | 111 | 72.9 | Minus |
BS17310.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:42 Download gff for
BS17310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-PA | 1..513 | 17..529 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:56 Download gff for
BS17310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 55..567 | 17..529 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:30 Download gff for
BS17310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 55..567 | 17..529 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:30 Download gff for
BS17310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2262973..2263294 | 208..529 | 100 | -> | Minus |
3L | 2263356..2263546 | 17..207 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:56 Download gff for
BS17310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2262973..2263294 | 208..529 | 100 | -> | Minus |
arm_3L | 2263356..2263546 | 17..207 | 100 | | Minus |
BS17310.5prime Sequence
543 bp (543 high quality bases) assembled on 2007-05-15
> BS17310.5prime
GAAGTTATCAGTCGACATGGTGGATCCCAACCGAAAGATAAACCGTCTGG
TCGAAAGGGACCTGAACTTCCTGGAGTCCTGCGAGCTTGAGTTCGCAGAC
CGCTTCACTGACGACGACCCAGAGTTCATGGCGCACTGCAGCAAGCCTGT
GCCGGAGCCGCCAATTGTGGAGAACTGGATGGGAGGTGGCGGAGGAGGAG
GCGGCTTCCAGGGCGGAGGAGGCGGTGGTCATCCCTACCACAATCGCTAC
AACGGACATCGCAGAGGAGGCGGCGACAGGGGCTGGCAGCGACGAGGAGG
AGCTGGCTACCACAACAACCAGGACAGGGGATTCAGGGACAACCGGCGCA
ACAACAGATACGATCACATCGATCGCCGGAATCGGTACGAAGGAGGCGGA
GGGTCCGGAGGATCTGGAGGCTACAAGCGCTCCCATGATCATAACCAGAG
AAATGATACTCCCAATAACGAACCACCCATGAAGGTCAGACGCGACTATG
GAAACTTTGTGCCTGCATCCAAGGATTAGAAGCTTTCTAGACC
BS17310.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-PA | 513 | CG13807-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:02:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-RA | 636 | CG13807-RA | 55..567 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2262973..2263294 | 17..338 | 1610 | 100 | Plus |
3L | 28110227 | 3L | 2263355..2263546 | 338..529 | 960 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 16:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 2682..2729 | 284..330 | 111 | 72.9 | Plus |
BS17310.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:16 Download gff for
BS17310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-PA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:36:04 Download gff for
BS17310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 55..567 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:15 Download gff for
BS17310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 55..567 | 17..529 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:15 Download gff for
BS17310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2262973..2263294 | 17..338 | 100 | -> | Plus |
3L | 2263356..2263546 | 339..529 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:36:04 Download gff for
BS17310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2262973..2263294 | 17..338 | 100 | -> | Plus |
arm_3L | 2263356..2263546 | 339..529 | 100 | | Plus |
BS17310.complete Sequence
545 bp assembled on 2007-05-30
GenBank Submission: KX805379
> BS17310.complete
GAAGTTATCAGTCGACATGGTGGATCCCAACCGAAAGATAAACCGTCTGG
TCGAAAGGGACCTGAACTTCCTGGAGTCCTGCGAGCTTGAGTTCGCAGAC
CGCTTCACTGACGACGACCCAGAGTTCATGGCGCACTGCAGCAAGCCTGT
GCCGGAGCCGCCAATTGTGGAGAACTGGATGGGAGGTGGCGGAGGAGGAG
GCGGCTTCCAGGGCGGAGGAGGCGGTGGTCATCCCTACCACAATCGCTAC
AACGGACATCGCAGAGGAGGCGGCGACAGGGGCTGGCAGCGACGAGGAGG
AGCTGGCTACCACAACAACCAGGACAGGGGATTCAGGGACAACCGGCGCA
ACAACAGATACGATCACATCGATCGCCGGAATCGGTACGAAGGAGGCGGA
GGGTCCGGAGGATCTGGAGGCTACAAGCGCTCCCATGATCATAACCAGAG
AAATGATACTCCCAATAACGAACCACCCATGAAGGTCAGACGCGACTATG
GAAACTTTGTGCCTGCATCCAAGGATTAGAAGCTTTCTAGACCAT
BS17310.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-RA | 513 | CG13807-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-RA | 636 | CG13807-RA | 55..567 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2262973..2263294 | 17..338 | 1610 | 100 | Plus |
3L | 28110227 | 3L | 2263355..2263546 | 338..529 | 960 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 2682..2729 | 284..330 | 111 | 72.9 | Plus |
BS17310.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:05 Download gff for
BS17310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:46 Download gff for
BS17310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:18 Download gff for
BS17310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 55..567 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:05 Download gff for
BS17310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:47 Download gff for
BS17310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 55..567 | 17..529 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:47 Download gff for
BS17310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2262973..2263294 | 17..338 | 100 | -> | Plus |
3L | 2263356..2263546 | 339..529 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:18 Download gff for
BS17310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2262973..2263294 | 17..338 | 100 | -> | Plus |
arm_3L | 2263356..2263546 | 339..529 | 100 | | Plus |
BS17310.pep Sequence
Translation from 16 to 528
> BS17310.pep
MVDPNRKINRLVERDLNFLESCELEFADRFTDDDPEFMAHCSKPVPEPPI
VENWMGGGGGGGGFQGGGGGGHPYHNRYNGHRRGGGDRGWQRRGGAGYHN
NQDRGFRDNRRNNRYDHIDRRNRYEGGGGSGGSGGYKRSHDHNQRNDTPN
NEPPMKVRRDYGNFVPASKD*
BS17310.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-PA | 170 | CG13807-PA | 1..170 | 1..170 | 978 | 100 | Plus |
caz-PD | 355 | CG3606-PD | 266..324 | 57..143 | 158 | 47.1 | Plus |
caz-PC | 384 | CG3606-PC | 295..353 | 57..143 | 158 | 47.1 | Plus |
caz-PB | 399 | CG3606-PB | 310..368 | 57..143 | 158 | 47.1 | Plus |
CG30122-PD | 1271 | CG30122-PD | 940..1044 | 56..163 | 154 | 39.1 | Plus |