Clone BS17310 Report

Search the DGRC for BS17310

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG13807-RA
Protein status:BS17310.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17310.3prime Sequence

543 bp (543 high quality bases) assembled on 2007-05-15

> BS17310.3prime
ATGGTCTAGAAAGCTTCTAATCCTTGGATGCAGGCACAAAGTTTCCATAG
TCGCGTCTGACCTTCATGGGTGGTTCGTTATTGGGAGTATCATTTCTCTG
GTTATGATCATGGGAGCGCTTGTAGCCTCCAGATCCTCCGGACCCTCCGC
CTCCTTCGTACCGATTCCGGCGATCGATGTGATCGTATCTGTTGTTGCGC
CGGTTGTCCCTGAATCCCCTGTCCTGGTTGTTGTGGTAGCCAGCTCCTCC
TCGTCGCTGCCAGCCCCTGTCGCCGCCTCCTCTGCGATGTCCGTTGTAGC
GATTGTGGTAGGGATGACCACCGCCTCCTCCGCCCTGGAAGCCGCCTCCT
CCTCCGCCACCTCCCATCCAGTTCTCCACAATTGGCGGCTCCGGCACAGG
CTTGCTGCAGTGCGCCATGAACTCTGGGTCGTCGTCAGTGAAGCGGTCTG
CGAACTCAAGCTCGCAGGACTCCAGGAAGTTCAGGTCCCTTTCGACCAGA
CGGTTTATCTTTCGGTTGGGATCCACCATGTCGACTGATAACT

BS17310.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-PA 513 CG13807-RA 1..513 529..17 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-RA 636 CG13807-RA 55..567 529..17 2565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2262973..2263294 529..208 1610 100 Minus
3L 28110227 3L 2263355..2263546 208..17 960 100 Minus
Blast to na_te.dros performed 2015-02-11 16:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2682..2729 262..216 111 72.9 Minus

BS17310.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:42 Download gff for BS17310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13807-PA 1..513 17..529 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:56 Download gff for BS17310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 55..567 17..529 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:30 Download gff for BS17310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 55..567 17..529 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:30 Download gff for BS17310.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2262973..2263294 208..529 100 -> Minus
3L 2263356..2263546 17..207 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:56 Download gff for BS17310.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2262973..2263294 208..529 100 -> Minus
arm_3L 2263356..2263546 17..207 100   Minus

BS17310.5prime Sequence

543 bp (543 high quality bases) assembled on 2007-05-15

> BS17310.5prime
GAAGTTATCAGTCGACATGGTGGATCCCAACCGAAAGATAAACCGTCTGG
TCGAAAGGGACCTGAACTTCCTGGAGTCCTGCGAGCTTGAGTTCGCAGAC
CGCTTCACTGACGACGACCCAGAGTTCATGGCGCACTGCAGCAAGCCTGT
GCCGGAGCCGCCAATTGTGGAGAACTGGATGGGAGGTGGCGGAGGAGGAG
GCGGCTTCCAGGGCGGAGGAGGCGGTGGTCATCCCTACCACAATCGCTAC
AACGGACATCGCAGAGGAGGCGGCGACAGGGGCTGGCAGCGACGAGGAGG
AGCTGGCTACCACAACAACCAGGACAGGGGATTCAGGGACAACCGGCGCA
ACAACAGATACGATCACATCGATCGCCGGAATCGGTACGAAGGAGGCGGA
GGGTCCGGAGGATCTGGAGGCTACAAGCGCTCCCATGATCATAACCAGAG
AAATGATACTCCCAATAACGAACCACCCATGAAGGTCAGACGCGACTATG
GAAACTTTGTGCCTGCATCCAAGGATTAGAAGCTTTCTAGACC

BS17310.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-PA 513 CG13807-RA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-RA 636 CG13807-RA 55..567 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2262973..2263294 17..338 1610 100 Plus
3L 28110227 3L 2263355..2263546 338..529 960 100 Plus
Blast to na_te.dros performed 2015-02-10 16:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2682..2729 284..330 111 72.9 Plus

BS17310.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:16 Download gff for BS17310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13807-PA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:36:04 Download gff for BS17310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 55..567 17..529 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:15 Download gff for BS17310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 55..567 17..529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:15 Download gff for BS17310.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2262973..2263294 17..338 100 -> Plus
3L 2263356..2263546 339..529 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:36:04 Download gff for BS17310.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2262973..2263294 17..338 100 -> Plus
arm_3L 2263356..2263546 339..529 100   Plus

BS17310.complete Sequence

545 bp assembled on 2007-05-30

GenBank Submission: KX805379

> BS17310.complete
GAAGTTATCAGTCGACATGGTGGATCCCAACCGAAAGATAAACCGTCTGG
TCGAAAGGGACCTGAACTTCCTGGAGTCCTGCGAGCTTGAGTTCGCAGAC
CGCTTCACTGACGACGACCCAGAGTTCATGGCGCACTGCAGCAAGCCTGT
GCCGGAGCCGCCAATTGTGGAGAACTGGATGGGAGGTGGCGGAGGAGGAG
GCGGCTTCCAGGGCGGAGGAGGCGGTGGTCATCCCTACCACAATCGCTAC
AACGGACATCGCAGAGGAGGCGGCGACAGGGGCTGGCAGCGACGAGGAGG
AGCTGGCTACCACAACAACCAGGACAGGGGATTCAGGGACAACCGGCGCA
ACAACAGATACGATCACATCGATCGCCGGAATCGGTACGAAGGAGGCGGA
GGGTCCGGAGGATCTGGAGGCTACAAGCGCTCCCATGATCATAACCAGAG
AAATGATACTCCCAATAACGAACCACCCATGAAGGTCAGACGCGACTATG
GAAACTTTGTGCCTGCATCCAAGGATTAGAAGCTTTCTAGACCAT

BS17310.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-RA 513 CG13807-PA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-RA 636 CG13807-RA 55..567 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2262973..2263294 17..338 1610 100 Plus
3L 28110227 3L 2263355..2263546 338..529 960 100 Plus
Blast to na_te.dros performed 2014-11-26 22:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2682..2729 284..330 111 72.9 Plus

BS17310.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:05 Download gff for BS17310.complete
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:46 Download gff for BS17310.complete
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:18 Download gff for BS17310.complete
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 55..567 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:05 Download gff for BS17310.complete
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:47 Download gff for BS17310.complete
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 55..567 17..529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:47 Download gff for BS17310.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2262973..2263294 17..338 100 -> Plus
3L 2263356..2263546 339..529 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:18 Download gff for BS17310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2262973..2263294 17..338 100 -> Plus
arm_3L 2263356..2263546 339..529 100   Plus

BS17310.pep Sequence

Translation from 16 to 528

> BS17310.pep
MVDPNRKINRLVERDLNFLESCELEFADRFTDDDPEFMAHCSKPVPEPPI
VENWMGGGGGGGGFQGGGGGGHPYHNRYNGHRRGGGDRGWQRRGGAGYHN
NQDRGFRDNRRNNRYDHIDRRNRYEGGGGSGGSGGYKRSHDHNQRNDTPN
NEPPMKVRRDYGNFVPASKD*

BS17310.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-PA 170 CG13807-PA 1..170 1..170 978 100 Plus
caz-PD 355 CG3606-PD 266..324 57..143 158 47.1 Plus
caz-PC 384 CG3606-PC 295..353 57..143 158 47.1 Plus
caz-PB 399 CG3606-PB 310..368 57..143 158 47.1 Plus
CG30122-PD 1271 CG30122-PD 940..1044 56..163 154 39.1 Plus