Clone BS17311 Report

Search the DGRC for BS17311

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG12691-RA
Protein status:BS17311.pep: full length peptide match
Sequenced Size:485

Clone Sequence Records

BS17311.complete Sequence

485 bp assembled on 2010-02-09

GenBank Submission: KX801880

> BS17311.complete
GAAGTTATCAGTCGACATGTTGCACAGCAGCTACAATCGCGCACCGCGCC
GCAAACTCATTCCGAATTTGTTTAGCAACATCCTACAGGTGATCGCCGAT
GCCGACCATCCGCTCACCGAACCCGAGATCATGGACGCGGTCGCCGATCG
GTTGGATCGCAGCGACGAGGAGCTGAAGCGCCAGATCACAGTAAGCCTCC
ACGACGCCCTAATCTACGGCTATCTGCGAGTGAAGAACTATCGTTACTCG
ATAGTGCCCAGTCGCCTGGATCCGGACGAACATCGCGATCATAACGAGCC
CAGTTCCTCCATCACCGCCGCCCCGGAACATAGTCGGCTGCAGGAGAGGA
TCTCGAGTGGAACCAGTGCTGCCATGGTTGACAACCAGGGTCGCGATGAA
GAACTCACACCAAAAAGCACTCAGGCGCTAAAGAGGTTAAATGCTGAGCC
GCAAGGGCAAACTAATTGAAAGCTTTCTAGACCAT

BS17311.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-RA 453 CG12691-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-RA 573 CG12691-RA 64..516 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4266160..4266612 17..469 2265 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:01:31 has no hits.

BS17311.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:32 Download gff for BS17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 1..453 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:17 Download gff for BS17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 6..452 22..468 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:15 Download gff for BS17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 69..515 22..468 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:32 Download gff for BS17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 1..453 17..469 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:59 Download gff for BS17311.complete
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 69..515 22..468 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:59 Download gff for BS17311.complete
Subject Subject Range Query Range Percent Splice Strand
X 4266165..4266611 22..468 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:15 Download gff for BS17311.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4160198..4160644 22..468 100   Plus

BS17311.3prime Sequence

483 bp (483 high quality bases) assembled on 2007-05-15

> BS17311.3prime
ATGGTCTAGAAAGCTTTCAATTAGTTTGCCCTTGCGGCTCAGCATTTAAC
CTCTTTAGCGCCTGAGTGCTTTTTGGTGTGAGTTCTTCATCGCGACCCTG
GTTGTCAACCATGGCAGCACTGGTTCCACTCGAGATCCTCTCCTGCAGCC
GACTATGTTCCGGGGCGGCGGTGATGGAGGAACTGGGCTCGTTATGATCG
CGATGTTCGTCCGGATCCAGGCGACTGGGCACTATCGAGTAACGATAGTT
CTTCACTCGCAGATAGCCGTAGATTAGGGCGTCGTGGAGGCTTACTGTGA
TCTGGCGCTTCAGCTCCTCGTCGCTGCGATCCAACCGATCGGCGACCGCG
TCCATGATCTCGGGTTCGGTGAGCGGATGGTCGGCATCGGCGATCACCTG
TAGGATGTTGCTAAACAAATTCGGAATGAGTTTGCGGCGCGGTGCGCGAT
TGTAGCTGCTGTGCAACATGTCGACTGATAACT

BS17311.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-PA 453 CG12691-RA 1..453 469..17 2265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-RA 573 CG12691-RA 64..516 469..17 2265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4266160..4266612 469..17 2265 100 Minus
Blast to na_te.dros performed on 2015-02-04 21:04:28 has no hits.

BS17311.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:51 Download gff for BS17311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12691-PA 1..453 17..469 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:48 Download gff for BS17311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 53..519 14..477 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:56 Download gff for BS17311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 53..519 14..477 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:56 Download gff for BS17311.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4266149..4266615 14..477 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:48 Download gff for BS17311.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4160182..4160648 14..477 98   Minus

BS17311.5prime Sequence

483 bp (483 high quality bases) assembled on 2007-05-15

> BS17311.5prime
GAAGTTATCAGTCGACATGTTGCACAGCAGCTACAATCGCGCACCGCGCC
GCAAACTCATTCCGAATTTGTTTAGCAACATCCTACAGGTGATCGCCGAT
GCCGACCATCCGCTCACCGAACCCGAGATCATGGACGCGGTCGCCGATCG
GTTGGATCGCAGCGACGAGGAGCTGAAGCGCCAGATCACAGTAAGCCTCC
ACGACGCCCTAATCTACGGCTATCTGCGAGTGAAGAACTATCGTTACTCG
ATAGTGCCCAGTCGCCTGGATCCGGACGAACATCGCGATCATAACGAGCC
CAGTTCCTCCATCACCGCCGCCCCGGAACATAGTCGGCTGCAGGAGAGGA
TCTCGAGTGGAACCAGTGCTGCCATGGTTGACAACCAGGGTCGCGATGAA
GAACTCACACCAAAAAGCACTCAGGCGCTAAAGAGGTTAAATGCTGAGCC
GCAAGGGCAAACTAATTGAAAGCTTTCTAGACC

BS17311.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-PA 453 CG12691-RA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-RA 573 CG12691-RA 64..516 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4266160..4266612 17..469 2265 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:16:38 has no hits.

BS17311.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:27 Download gff for BS17311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12691-PA 1..453 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:51:06 Download gff for BS17311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 53..519 9..472 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:49 Download gff for BS17311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 53..519 9..472 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:49 Download gff for BS17311.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4266159..4266615 11..472 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:51:06 Download gff for BS17311.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4160192..4160648 11..472 98   Plus

BS17311.pep Sequence

Translation from 16 to 468

> BS17311.pep
MLHSSYNRAPRRKLIPNLFSNILQVIADADHPLTEPEIMDAVADRLDRSD
EELKRQITVSLHDALIYGYLRVKNYRYSIVPSRLDPDEHRDHNEPSSSIT
AAPEHSRLQERISSGTSAAMVDNQGRDEELTPKSTQALKRLNAEPQGQTN
*

BS17311.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-PA 150 CG12691-PA 1..150 1..150 766 100 Plus