Clone BS17312 Report

Search the DGRC for BS17312

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG12883-RA
Protein status:BS17312.pep: full length peptide match
Sequenced Size:506

Clone Sequence Records

BS17312.complete Sequence

506 bp assembled on 2010-02-09

GenBank Submission: KX800797

> BS17312.complete
GAAGTTATCAGTCGACATGGCCAGCAGTTCGAGCAAGAACAAGACCCTAC
AGCTGATAAGGTGCTTCTGCGGATGCAGTAACATGACTGTCGCCGAGGTG
CGGAGGATCTATGTTCTGTCGAACAGTGTGCACGAGACGCTGCTGGATGC
GGAGGCCACCAGACTGCTGCGCAAGTTCATGGAGACGAGGCGGTCCGGCG
ACAAGGACGAGGCCGAGCAGTACTTGGACATCTACGAGAAGTGCGCCGAG
TTTCTCGCTGAGCACCAGCGCACCTTCACCCAGGACGAGGTGGACGAACT
GGTCGATCTGGGCCTGCCCTACGACCTGGAGCAGGATCTCTCCAGGCGCA
TGCTCAGCGCCGATCGCACGGACATCAGCAGCGGGCTCTATCGCATCCAG
AGCAAATGTCGCAACGAAATCGAGGGCAGCAGCGATTTTCGAGACTTCAG
GGACGCCATCGCTGATAAGATGCGTCGGGTGCCAAAATGAAAGCTTTCTA
GACCAT

BS17312.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12883-RA 474 CG12883-PA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12883-RA 976 CG12883-RA 115..593 12..490 2380 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27679499..27679953 36..490 2275 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:02:23 has no hits.

BS17312.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:53 Download gff for BS17312.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:23 Download gff for BS17312.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 120..586 17..483 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:36 Download gff for BS17312.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 120..586 17..483 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:53 Download gff for BS17312.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 112..593 9..490 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:20 Download gff for BS17312.complete
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 120..586 17..483 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:20 Download gff for BS17312.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27679410..27679430 17..37 100 -> Plus
3R 27679501..27679946 38..483 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:36 Download gff for BS17312.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23505132..23505152 17..37 100 -> Plus
arm_3R 23505223..23505668 38..483 100   Plus

BS17312.3prime Sequence

504 bp (504 high quality bases) assembled on 2007-05-15

> BS17312.3prime
ATGGTCTAGAAAGCTTTCATTTTGGCACCCGACGCATCTTATCAGCGATG
GCGTCCCTGAAGTCTCGAAAATCGCTGCTGCCCTCGATTTCGTTGCGACA
TTTGCTCTGGATGCGATAGAGCCCGCTGCTGATGTCCGTGCGATCGGCGC
TGAGCATGCGCCTGGAGAGATCCTGCTCCAGGTCGTAGGGCAGGCCCAGA
TCGACCAGTTCGTCCACCTCGTCCTGGGTGAAGGTGCGCTGGTGCTCAGC
GAGAAACTCGGCGCACTTCTCGTAGATGTCCAAGTACTGCTCGGCCTCGT
CCTTGTCGCCGGACCGCCTCGTCTCCATGAACTTGCGCAGCAGTCTGGTG
GCCTCCGCATCCAGCAGCGTCTCGTGCACACTGTTCGACAGAACATAGAT
CCTCCGCACCTCGGCGACAGTCATGTTACTGCATCCGCAGAAGCACCTTA
TCAGCTGTAGGGTCTTGTTCTTGCTCGAACTGCTGGCCATGTCGACTGAT
AACT

BS17312.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12883-PA 474 CG12883-RA 1..474 490..17 2370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12883-RA 976 CG12883-RA 115..593 495..17 2380 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27679499..27679953 471..17 2275 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:19:16 has no hits.

BS17312.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:35:00 Download gff for BS17312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12883-PA 1..474 17..490 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:55:15 Download gff for BS17312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 112..593 17..498 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:51 Download gff for BS17312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 112..593 17..498 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:51 Download gff for BS17312.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27679402..27679430 470..498 93 -> Minus
3R 27679501..27679953 17..469 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:55:15 Download gff for BS17312.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23505124..23505152 470..498 93 -> Minus
arm_3R 23505223..23505675 17..469 100   Minus

BS17312.5prime Sequence

504 bp (504 high quality bases) assembled on 2007-05-15

> BS17312.5prime
GAAGTTATCAGTCGACATGGCCAGCAGTTCGAGCAAGAACAAGACCCTAC
AGCTGATAAGGTGCTTCTGCGGATGCAGTAACATGACTGTCGCCGAGGTG
CGGAGGATCTATGTTCTGTCGAACAGTGTGCACGAGACGCTGCTGGATGC
GGAGGCCACCAGACTGCTGCGCAAGTTCATGGAGACGAGGCGGTCCGGCG
ACAAGGACGAGGCCGAGCAGTACTTGGACATCTACGAGAAGTGCGCCGAG
TTTCTCGCTGAGCACCAGCGCACCTTCACCCAGGACGAGGTGGACGAACT
GGTCGATCTGGGCCTGCCCTACGACCTGGAGCAGGATCTCTCCAGGCGCA
TGCTCAGCGCCGATCGCACGGACATCAGCAGCGGGCTCTATCGCATCCAG
AGCAAATGTCGCAACGAAATCGAGGGCAGCAGCGATTTTCGAGACTTCAG
GGACGCCATCGCTGATAAGATGCGTCGGGTGCCAAAATGAAAGCTTTCTA
GACC

BS17312.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12883-PA 474 CG12883-RA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12883-RA 976 CG12883-RA 115..593 12..490 2380 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27679499..27679953 36..490 2275 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:34:29 has no hits.

BS17312.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:37 Download gff for BS17312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12883-PA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:06 Download gff for BS17312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 112..593 9..490 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:10 Download gff for BS17312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12883-RA 112..593 9..490 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:10 Download gff for BS17312.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27679402..27679430 9..37 93 -> Plus
3R 27679501..27679953 38..490 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:06 Download gff for BS17312.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23505124..23505152 9..37 93 -> Plus
arm_3R 23505223..23505675 38..490 100   Plus

BS17312.pep Sequence

Translation from 16 to 489

> BS17312.pep
MASSSSKNKTLQLIRCFCGCSNMTVAEVRRIYVLSNSVHETLLDAEATRL
LRKFMETRRSGDKDEAEQYLDIYEKCAEFLAEHQRTFTQDEVDELVDLGL
PYDLEQDLSRRMLSADRTDISSGLYRIQSKCRNEIEGSSDFRDFRDAIAD
KMRRVPK*

BS17312.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12883-PA 157 CG12883-PA 1..157 1..157 800 100 Plus
CG14610-PB 147 CG14610-PB 1..136 1..150 223 40 Plus