Clone Sequence Records
BS17312.complete Sequence
506 bp assembled on 2010-02-09
GenBank Submission: KX800797
> BS17312.complete
GAAGTTATCAGTCGACATGGCCAGCAGTTCGAGCAAGAACAAGACCCTAC
AGCTGATAAGGTGCTTCTGCGGATGCAGTAACATGACTGTCGCCGAGGTG
CGGAGGATCTATGTTCTGTCGAACAGTGTGCACGAGACGCTGCTGGATGC
GGAGGCCACCAGACTGCTGCGCAAGTTCATGGAGACGAGGCGGTCCGGCG
ACAAGGACGAGGCCGAGCAGTACTTGGACATCTACGAGAAGTGCGCCGAG
TTTCTCGCTGAGCACCAGCGCACCTTCACCCAGGACGAGGTGGACGAACT
GGTCGATCTGGGCCTGCCCTACGACCTGGAGCAGGATCTCTCCAGGCGCA
TGCTCAGCGCCGATCGCACGGACATCAGCAGCGGGCTCTATCGCATCCAG
AGCAAATGTCGCAACGAAATCGAGGGCAGCAGCGATTTTCGAGACTTCAG
GGACGCCATCGCTGATAAGATGCGTCGGGTGCCAAAATGAAAGCTTTCTA
GACCAT
BS17312.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12883-RA | 474 | CG12883-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12883-RA | 976 | CG12883-RA | 115..593 | 12..490 | 2380 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27679499..27679953 | 36..490 | 2275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:02:23 has no hits.
BS17312.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:53 Download gff for
BS17312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12883-RA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:23 Download gff for
BS17312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12883-RA | 120..586 | 17..483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:36 Download gff for
BS17312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12883-RA | 120..586 | 17..483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:53 Download gff for
BS17312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12883-RA | 112..593 | 9..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:20 Download gff for
BS17312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12883-RA | 120..586 | 17..483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:20 Download gff for
BS17312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27679410..27679430 | 17..37 | 100 | -> | Plus |
3R | 27679501..27679946 | 38..483 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:36 Download gff for
BS17312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23505132..23505152 | 17..37 | 100 | -> | Plus |
arm_3R | 23505223..23505668 | 38..483 | 100 | | Plus |
BS17312.3prime Sequence
504 bp (504 high quality bases) assembled on 2007-05-15
> BS17312.3prime
ATGGTCTAGAAAGCTTTCATTTTGGCACCCGACGCATCTTATCAGCGATG
GCGTCCCTGAAGTCTCGAAAATCGCTGCTGCCCTCGATTTCGTTGCGACA
TTTGCTCTGGATGCGATAGAGCCCGCTGCTGATGTCCGTGCGATCGGCGC
TGAGCATGCGCCTGGAGAGATCCTGCTCCAGGTCGTAGGGCAGGCCCAGA
TCGACCAGTTCGTCCACCTCGTCCTGGGTGAAGGTGCGCTGGTGCTCAGC
GAGAAACTCGGCGCACTTCTCGTAGATGTCCAAGTACTGCTCGGCCTCGT
CCTTGTCGCCGGACCGCCTCGTCTCCATGAACTTGCGCAGCAGTCTGGTG
GCCTCCGCATCCAGCAGCGTCTCGTGCACACTGTTCGACAGAACATAGAT
CCTCCGCACCTCGGCGACAGTCATGTTACTGCATCCGCAGAAGCACCTTA
TCAGCTGTAGGGTCTTGTTCTTGCTCGAACTGCTGGCCATGTCGACTGAT
AACT
BS17312.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12883-PA | 474 | CG12883-RA | 1..474 | 490..17 | 2370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12883-RA | 976 | CG12883-RA | 115..593 | 495..17 | 2380 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27679499..27679953 | 471..17 | 2275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:19:16 has no hits.
BS17312.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:35:00 Download gff for
BS17312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12883-PA | 1..474 | 17..490 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:55:15 Download gff for
BS17312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12883-RA | 112..593 | 17..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:51 Download gff for
BS17312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12883-RA | 112..593 | 17..498 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:51 Download gff for
BS17312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27679402..27679430 | 470..498 | 93 | -> | Minus |
3R | 27679501..27679953 | 17..469 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:55:15 Download gff for
BS17312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23505124..23505152 | 470..498 | 93 | -> | Minus |
arm_3R | 23505223..23505675 | 17..469 | 100 | | Minus |
BS17312.5prime Sequence
504 bp (504 high quality bases) assembled on 2007-05-15
> BS17312.5prime
GAAGTTATCAGTCGACATGGCCAGCAGTTCGAGCAAGAACAAGACCCTAC
AGCTGATAAGGTGCTTCTGCGGATGCAGTAACATGACTGTCGCCGAGGTG
CGGAGGATCTATGTTCTGTCGAACAGTGTGCACGAGACGCTGCTGGATGC
GGAGGCCACCAGACTGCTGCGCAAGTTCATGGAGACGAGGCGGTCCGGCG
ACAAGGACGAGGCCGAGCAGTACTTGGACATCTACGAGAAGTGCGCCGAG
TTTCTCGCTGAGCACCAGCGCACCTTCACCCAGGACGAGGTGGACGAACT
GGTCGATCTGGGCCTGCCCTACGACCTGGAGCAGGATCTCTCCAGGCGCA
TGCTCAGCGCCGATCGCACGGACATCAGCAGCGGGCTCTATCGCATCCAG
AGCAAATGTCGCAACGAAATCGAGGGCAGCAGCGATTTTCGAGACTTCAG
GGACGCCATCGCTGATAAGATGCGTCGGGTGCCAAAATGAAAGCTTTCTA
GACC
BS17312.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12883-PA | 474 | CG12883-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12883-RA | 976 | CG12883-RA | 115..593 | 12..490 | 2380 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27679499..27679953 | 36..490 | 2275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:34:29 has no hits.
BS17312.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:37 Download gff for
BS17312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12883-PA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:06 Download gff for
BS17312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12883-RA | 112..593 | 9..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:10 Download gff for
BS17312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12883-RA | 112..593 | 9..490 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:10 Download gff for
BS17312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27679402..27679430 | 9..37 | 93 | -> | Plus |
3R | 27679501..27679953 | 38..490 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:06 Download gff for
BS17312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23505124..23505152 | 9..37 | 93 | -> | Plus |
arm_3R | 23505223..23505675 | 38..490 | 100 | | Plus |
BS17312.pep Sequence
Translation from 16 to 489
> BS17312.pep
MASSSSKNKTLQLIRCFCGCSNMTVAEVRRIYVLSNSVHETLLDAEATRL
LRKFMETRRSGDKDEAEQYLDIYEKCAEFLAEHQRTFTQDEVDELVDLGL
PYDLEQDLSRRMLSADRTDISSGLYRIQSKCRNEIEGSSDFRDFRDAIAD
KMRRVPK*
BS17312.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12883-PA | 157 | CG12883-PA | 1..157 | 1..157 | 800 | 100 | Plus |
CG14610-PB | 147 | CG14610-PB | 1..136 | 1..150 | 223 | 40 | Plus |