Clone Sequence Records
BS17316.complete Sequence
338 bp assembled on 2010-02-09
GenBank Submission: KX801426
> BS17316.complete
GAAGTTATCAGTCGACATGGATTTCGGTGAAAACGTGTTTGACCGTTTGG
ATGCGTGGACTAAAAGTGAAGTGAAGCCCGGTGAAATGGGACGCATCTTG
GCCGTTCTTCTGACCCTGATAGTGATCAGCTTTGCCATTGTCGTTGTGGC
TCGCATCCTGGTATCTCTGGCCATACCAACATTGGTTATTGTGGCACTTT
TGATGGCATACCGTTTCGTCACTCTTTCGGAAATGAAAGATGGTCTCATG
GCTGTGCCCGATATTCTAACATCGTGTACGAACTTTATATCTGGCCTTTT
TTGCCAGTTGAAGGCAAAGTAAAAGCTTTCTAGACCAT
BS17316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-RA | 306 | CG12784-PA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-RA | 437 | CG12784-RA | 55..362 | 17..324 | 1540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15763169..15763476 | 17..324 | 1540 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib2 | 2844 | transib2 TRANSIB2 2844bp | 2260..2303 | 36..81 | 108 | 73.9 | Plus |
BS17316.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:14 Download gff for
BS17316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 1..306 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:01 Download gff for
BS17316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 55..358 | 17..320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:13 Download gff for
BS17316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 55..358 | 17..320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:14 Download gff for
BS17316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 52..366 | 14..331 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:17 Download gff for
BS17316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 55..358 | 17..320 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:17 Download gff for
BS17316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15763169..15763472 | 17..320 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:13 Download gff for
BS17316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11588891..11589194 | 17..320 | 100 | | Plus |
BS17316.3prime Sequence
336 bp (336 high quality bases) assembled on 2007-05-15
> BS17316.3prime
ATGGTCTAGAAAGCTTTTACTTTGCCTTCAACTGGCAAAAAAGGCCAGAT
ATAAAGTTCGTACACGATGTTAGAATATCGGGCACAGCCATGAGACCATC
TTTCATTTCCGAAAGAGTGACGAAACGGTATGCCATCAAAAGTGCCACAA
TAACCAATGTTGGTATGGCCAGAGATACCAGGATGCGAGCCACAACGACA
ATGGCAAAGCTGATCACTATCAGGGTCAGAAGAACGGCCAAGATGCGTCC
CATTTCACCGGGCTTCACTTCACTTTTAGTCCACGCATCCAAACGGTCAA
ACACGTTTTCACCGAAATCCATGTCGACTGATAACT
BS17316.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-PA | 306 | CG12784-RA | 1..306 | 322..17 | 1530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-RA | 437 | CG12784-RA | 55..362 | 322..15 | 1540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15763169..15763476 | 322..15 | 1540 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib2 | 2844 | transib2 TRANSIB2 2844bp | 2260..2303 | 303..258 | 108 | 73.9 | Minus |
BS17316.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:35:05 Download gff for
BS17316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-PA | 1..306 | 17..322 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:00 Download gff for
BS17316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 52..366 | 8..325 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:37 Download gff for
BS17316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 52..366 | 8..325 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:37 Download gff for
BS17316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15763166..15763480 | 8..325 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:00 Download gff for
BS17316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11588888..11589202 | 8..325 | 98 | | Minus |
BS17316.5prime Sequence
336 bp (336 high quality bases) assembled on 2007-05-15
> BS17316.5prime
GAAGTTATCAGTCGACATGGATTTCGGTGAAAACGTGTTTGACCGTTTGG
ATGCGTGGACTAAAAGTGAAGTGAAGCCCGGTGAAATGGGACGCATCTTG
GCCGTTCTTCTGACCCTGATAGTGATCAGCTTTGCCATTGTCGTTGTGGC
TCGCATCCTGGTATCTCTGGCCATACCAACATTGGTTATTGTGGCACTTT
TGATGGCATACCGTTTCGTCACTCTTTCGGAAATGAAAGATGGTCTCATG
GCTGTGCCCGATATTCTAACATCGTGTACGAACTTTATATCTGGCCTTTT
TTGCCAGTTGAAGGCAAAGTAAAAGCTTTCTAGACC
BS17316.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-PA | 306 | CG12784-RA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-RA | 437 | CG12784-RA | 55..362 | 17..324 | 1540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15763169..15763476 | 17..324 | 1540 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 15:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib2 | 2844 | transib2 TRANSIB2 2844bp | 2260..2303 | 36..81 | 108 | 73.9 | Plus |
BS17316.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:42 Download gff for
BS17316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-PA | 1..306 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:21:36 Download gff for
BS17316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 52..366 | 14..331 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:35 Download gff for
BS17316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 52..366 | 14..331 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:35 Download gff for
BS17316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15763166..15763480 | 14..331 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:21:36 Download gff for
BS17316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11588888..11589202 | 14..331 | 98 | | Plus |
BS17316.pep Sequence
Translation from 16 to 321
> BS17316.pep
MDFGENVFDRLDAWTKSEVKPGEMGRILAVLLTLIVISFAIVVVARILVS
LAIPTLVIVALLMAYRFVTLSEMKDGLMAVPDILTSCTNFISGLFCQLKA
K*
BS17316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-PA | 101 | CG12784-PA | 1..101 | 1..101 | 494 | 100 | Plus |