Clone BS17318 Report

Search the DGRC for BS17318

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG13641-RA
Protein status:BS17318.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17318.3prime Sequence

459 bp (459 high quality bases) assembled on 2007-05-15

> BS17318.3prime
ATGGTCTAGAAAGCTTTTAGTAACCCCGCTGCTTGTAACCACCTCCACCT
CCGTAAAGATCCTGATTCTTGTGCGGATAATGGACACTGGCAGGATGAGA
CGGCTGAGAGTAGTATCCAGGCGAAGGACGCACTGACCAAGGTGGTGGAT
AGTAGTCATTTGCTGCCGGAACCGGTCGTGGTGGGTAATAGGCATAGCCA
CCTGGATGCGTCTGCTGGTGGCTACCACCGTAGCCGTAGCCTCCACCATA
GTGATAGTCGTAGCCCTGCTCGTAGCCCTCCTGGATGAGTGGACCTGGTC
CAGGATGTAGCTGTGGATCAACTGGCCTTGCTGGCGGATAATGATTTGGG
TCGCCGAACAGAAGCTCCGCAATCTTATCGAAAGTGGGTCTACCGTGGGC
CAAGCTGGCCAGGATTAGCACTAGAATCGCAGCCAACAACTGCATGTCGA
CTGATAACT

BS17318.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13641-PA 429 CG13641-RA 1..429 445..17 2145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13641-RA 542 CG13641-RA 27..455 445..17 2145 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24864278..24864706 17..445 2145 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:20:27 has no hits.

BS17318.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:35:22 Download gff for BS17318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13641-PA 1..429 17..445 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:52:21 Download gff for BS17318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13641-RA 27..459 11..445 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:01:48 Download gff for BS17318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13641-RA 27..459 11..445 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:01:48 Download gff for BS17318.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24864274..24864706 11..445 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:52:21 Download gff for BS17318.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20689996..20690428 11..445 99   Plus

BS17318.5prime Sequence

459 bp (459 high quality bases) assembled on 2007-05-15

> BS17318.5prime
GAAGTTATCAGTCGACATGCAGTTGTTGGCTGCGATTCTAGTGCTAATCC
TGGCCAGCTTGGCCCACGGTAGACCCACTTTCGATAAGATTGCGGAGCTT
CTGTTCGGCGACCCAAATCATTATCCGCCAGCAAGGCCAGTTGATCCACA
GCTACATCCTGGACCAGGTCCACTCATCCAGGAGGGCTACGAGCAGGGCT
ACGACTATCACTATGGTGGAGGCTACGGCTACGGTGGTAGCCACCAGCAG
ACGCATCCAGGTGGCTATGCCTATTACCCACCACGACCGGTTCCGGCAGC
AAATGACTACTATCCACCACCTTGGTCAGTGCGTCCTTCGCCTGGATACT
ACTCTCAGCCGTCTCATCCTGCCAGTGTCCATTATCCGCACAAGAATCAG
GATCTTTACGGAGGTGGAGGTGGTTACAAGCAGCGGGGTTACTAAAAGCT
TTCTAGACC

BS17318.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13641-PA 429 CG13641-RA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13641-RA 542 CG13641-RA 27..455 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24864278..24864706 445..17 2145 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:07:44 has no hits.

BS17318.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:28:01 Download gff for BS17318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13641-PA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:53 Download gff for BS17318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13641-RA 27..459 17..451 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:53 Download gff for BS17318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13641-RA 27..459 17..451 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:53 Download gff for BS17318.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24864274..24864706 17..451 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:53 Download gff for BS17318.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20689996..20690428 17..451 99   Minus

BS17318.complete Sequence

461 bp assembled on 2007-05-30

GenBank Submission: KX806429

> BS17318.complete
GAAGTTATCAGTCGACATGCAGTTGTTGGCTGCGATTCTAGTGCTAATCC
TGGCCAGCTTGGCCCACGGTAGACCCACTTTCGATAAGATTGCGGAGCTT
CTGTTCGGCGACCCAAATCATTATCCGCCAGCAAGGCCAGTTGATCCACA
GCTACATCCTGGACCAGGTCCACTCATCCAGGAGGGCTACGAGCAGGGCT
ACGACTATCACTATGGTGGAGGCTACGGCTACGGTGGTAGCCACCAGCAG
ACGCATCCAGGTGGCTATGCCTATTACCCACCACGACCGGTTCCGGCAGC
AAATGACTACTATCCACCACCTTGGTCAGTGCGTCCTTCGCCTGGATACT
ACTCTCAGCCGTCTCATCCTGCCAGTGTCCATTATCCGCACAAGAATCAG
GATCTTTACGGAGGTGGAGGTGGTTACAAGCAGCGGGGTTACTAAAAGCT
TTCTAGACCAT

BS17318.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13641-RA 429 CG13641-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13641-RA 542 CG13641-RA 27..455 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24864278..24864706 445..17 2145 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:02:41 has no hits.

BS17318.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:37:36 Download gff for BS17318.complete
Subject Subject Range Query Range Percent Splice Strand
CG13641-RA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:16 Download gff for BS17318.complete
Subject Subject Range Query Range Percent Splice Strand
CG13641-RA 75..507 17..451 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:07 Download gff for BS17318.complete
Subject Subject Range Query Range Percent Splice Strand
CG13641-RA 27..453 17..443 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:37:37 Download gff for BS17318.complete
Subject Subject Range Query Range Percent Splice Strand
CG13641-RA 75..507 17..451 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:30 Download gff for BS17318.complete
Subject Subject Range Query Range Percent Splice Strand
CG13641-RA 27..453 17..443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:30 Download gff for BS17318.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24864280..24864706 17..443 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:07 Download gff for BS17318.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20690002..20690428 17..443 100   Minus

BS17318.pep Sequence

Translation from 16 to 444

> BS17318.pep
MQLLAAILVLILASLAHGRPTFDKIAELLFGDPNHYPPARPVDPQLHPGP
GPLIQEGYEQGYDYHYGGGYGYGGSHQQTHPGGYAYYPPRPVPAANDYYP
PPWSVRPSPGYYSQPSHPASVHYPHKNQDLYGGGGGYKQRGY*

BS17318.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13641-PA 142 CG13641-PA 1..142 1..142 818 100 Plus