Clone BS17320 Report

Search the DGRC for BS17320

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG13898-RA
Protein status:BS17320.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17320.3prime Sequence

486 bp (486 high quality bases) assembled on 2007-05-15

> BS17320.3prime
ATGGTCTAGAAAGCTTTTAGGATCTATAGGCTGTACAAAAATCACGGAAG
TTAATAACGCCATCGCCATCAACATCAGCCTGACGAAACACTTCATTGAA
CTCTTCGTCGGATATTTTTTCGCCAAGATTGATGAAAACGTGACGTAGCT
CGCCATATGTTACCAAACCGTCCTTATCAAAATCGAAGGCATTATATGCT
GCCTTCAAATAGTCACTGCTGCCCATCGCGCTGTAGATTTTGGTCATCAA
ATCGATGAAATCAGTGAGTTGTATGTACCCGTTGACGTCTCCCTCGAGTC
CCTCGGAATATCTGTAGATTTCCGACTCGGTGTGATTCTGGCCGAGAGTG
CGCATCACTTCTCCCAAATCGTCTGCTCTGATTCTTCCAGTCTTCTCAGG
ATCACAGAGCTCGAAGGCTTCGCAAATGTCTTGAAGATCGTCATTCGCCA
ATATGTAGTCTTGTGATTCCATGTCGACTGATAACT

BS17320.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13898-PA 456 CG13898-RA 1..456 472..17 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13898-RA 625 CG13898-RA 79..535 472..16 2285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 803517..803973 16..472 2285 100 Plus
Blast to na_te.dros performed on 2015-02-04 21:03:06 has no hits.

BS17320.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:42 Download gff for BS17320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13898-PA 1..456 17..472 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:28 Download gff for BS17320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13898-RA 69..535 16..482 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:33 Download gff for BS17320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13898-RA 69..535 16..482 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:33 Download gff for BS17320.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 803517..803983 16..482 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:28 Download gff for BS17320.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 803517..803983 16..482 99   Plus

BS17320.5prime Sequence

486 bp (486 high quality bases) assembled on 2007-05-15

> BS17320.5prime
GAAGTTATCAGTCGACATGGAATCACAAGACTACATATTGGCGAATGACG
ATCTTCAAGACATTTGCGAAGCCTTCGAGCTCTGTGATCCTGAGAAGACT
GGAAGAATCAGAGCAGACGATTTGGGAGAAGTGATGCGCACTCTCGGCCA
GAATCACACCGAGTCGGAAATCTACAGATATTCCGAGGGACTCGAGGGAG
ACGTCAACGGGTACATACAACTCACTGATTTCATCGATTTGATGACCAAA
ATCTACAGCGCGATGGGCAGCAGTGACTATTTGAAGGCAGCATATAATGC
CTTCGATTTTGATAAGGACGGTTTGGTAACATATGGCGAGCTACGTCACG
TTTTCATCAATCTTGGCGAAAAAATATCCGACGAAGAGTTCAATGAAGTG
TTTCGTCAGGCTGATGTTGATGGCGATGGCGTTATTAACTTCCGTGATTT
TTGTACAGCCTATAGATCCTAAAAGCTTTCTAGACC

BS17320.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13898-PA 456 CG13898-RA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13898-RA 625 CG13898-RA 79..535 17..473 2285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 803517..803973 473..17 2285 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:07:31 has no hits.

BS17320.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:32 Download gff for BS17320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13898-PA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:20:18 Download gff for BS17320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13898-RA 69..535 7..473 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:30 Download gff for BS17320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13898-RA 69..535 7..473 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:30 Download gff for BS17320.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 803517..803983 7..473 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:20:18 Download gff for BS17320.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 803517..803983 7..473 99   Minus

BS17320.complete Sequence

488 bp assembled on 2007-05-30

GenBank Submission: KX801391

> BS17320.complete
GAAGTTATCAGTCGACATGGAATCACAAGACTACATATTGGCGAATGACG
ATCTTCAAGACATTTGCGAAGCCTTCGAGCTCTGTGATCCTGAGAAGACT
GGAAGAATCAGAGCAGACGATTTGGGAGAAGTGATGCGCACTCTCGGCCA
GAATCACACCGAGTCGGAAATCTACAGATATTCCGAGGGACTCGAGGGAG
ACGTCAACGGGTACATACAACTCACTGATTTCATCGATTTGATGACCAAA
ATCTACAGCGCGATGGGCAGCAGTGACTATTTGAAGGCAGCATATAATGC
CTTCGATTTTGATAAGGACGGTTTGGTAACATATGGCGAGCTACGTCACG
TTTTCATCAATCTTGGCGAAAAAATATCCGACGAAGAGTTCAATGAAGTG
TTTCGTCAGGCTGATGTTGATGGCGATGGCGTTATTAACTTCCGTGATTT
TTGTACAGCCTATAGATCCTAAAAGCTTTCTAGACCAT

BS17320.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13898-RA 456 CG13898-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13898-RA 625 CG13898-RA 79..535 17..473 2285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 803517..803973 473..17 2285 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:59:17 has no hits.

BS17320.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:52 Download gff for BS17320.complete
Subject Subject Range Query Range Percent Splice Strand
CG13898-RA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:27 Download gff for BS17320.complete
Subject Subject Range Query Range Percent Splice Strand
CG13898-RA 69..535 7..473 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:39 Download gff for BS17320.complete
Subject Subject Range Query Range Percent Splice Strand
CG13898-RA 79..532 17..470 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:52 Download gff for BS17320.complete
Subject Subject Range Query Range Percent Splice Strand
CG13898-RA 18..483 7..472 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:22 Download gff for BS17320.complete
Subject Subject Range Query Range Percent Splice Strand
CG13898-RA 79..532 17..470 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:22 Download gff for BS17320.complete
Subject Subject Range Query Range Percent Splice Strand
3L 803520..803973 17..470 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:39 Download gff for BS17320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 803520..803973 17..470 100   Minus

BS17320.pep Sequence

Translation from 16 to 471

> BS17320.pep
MESQDYILANDDLQDICEAFELCDPEKTGRIRADDLGEVMRTLGQNHTES
EIYRYSEGLEGDVNGYIQLTDFIDLMTKIYSAMGSSDYLKAAYNAFDFDK
DGLVTYGELRHVFINLGEKISDEEFNEVFRQADVDGDGVINFRDFCTAYR
S*

BS17320.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13898-PA 151 CG13898-PA 1..151 1..151 794 100 Plus
Cam-PD 149 CG8472-PD 5..148 8..151 297 39.6 Plus
Cam-PC 149 CG8472-PC 5..148 8..151 297 39.6 Plus
Cam-PE 149 CG8472-PE 5..148 8..151 297 39.6 Plus
Cam-PB 149 CG8472-PB 5..148 8..151 297 39.6 Plus