Clone Sequence Records
BS17320.3prime Sequence
486 bp (486 high quality bases) assembled on 2007-05-15
> BS17320.3prime
ATGGTCTAGAAAGCTTTTAGGATCTATAGGCTGTACAAAAATCACGGAAG
TTAATAACGCCATCGCCATCAACATCAGCCTGACGAAACACTTCATTGAA
CTCTTCGTCGGATATTTTTTCGCCAAGATTGATGAAAACGTGACGTAGCT
CGCCATATGTTACCAAACCGTCCTTATCAAAATCGAAGGCATTATATGCT
GCCTTCAAATAGTCACTGCTGCCCATCGCGCTGTAGATTTTGGTCATCAA
ATCGATGAAATCAGTGAGTTGTATGTACCCGTTGACGTCTCCCTCGAGTC
CCTCGGAATATCTGTAGATTTCCGACTCGGTGTGATTCTGGCCGAGAGTG
CGCATCACTTCTCCCAAATCGTCTGCTCTGATTCTTCCAGTCTTCTCAGG
ATCACAGAGCTCGAAGGCTTCGCAAATGTCTTGAAGATCGTCATTCGCCA
ATATGTAGTCTTGTGATTCCATGTCGACTGATAACT
BS17320.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13898-PA | 456 | CG13898-RA | 1..456 | 472..17 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13898-RA | 625 | CG13898-RA | 79..535 | 472..16 | 2285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 803517..803973 | 16..472 | 2285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:03:06 has no hits.
BS17320.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:31:42 Download gff for
BS17320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13898-PA | 1..456 | 17..472 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:28 Download gff for
BS17320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13898-RA | 69..535 | 16..482 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:33 Download gff for
BS17320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13898-RA | 69..535 | 16..482 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:33 Download gff for
BS17320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 803517..803983 | 16..482 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:28 Download gff for
BS17320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 803517..803983 | 16..482 | 99 | | Plus |
BS17320.5prime Sequence
486 bp (486 high quality bases) assembled on 2007-05-15
> BS17320.5prime
GAAGTTATCAGTCGACATGGAATCACAAGACTACATATTGGCGAATGACG
ATCTTCAAGACATTTGCGAAGCCTTCGAGCTCTGTGATCCTGAGAAGACT
GGAAGAATCAGAGCAGACGATTTGGGAGAAGTGATGCGCACTCTCGGCCA
GAATCACACCGAGTCGGAAATCTACAGATATTCCGAGGGACTCGAGGGAG
ACGTCAACGGGTACATACAACTCACTGATTTCATCGATTTGATGACCAAA
ATCTACAGCGCGATGGGCAGCAGTGACTATTTGAAGGCAGCATATAATGC
CTTCGATTTTGATAAGGACGGTTTGGTAACATATGGCGAGCTACGTCACG
TTTTCATCAATCTTGGCGAAAAAATATCCGACGAAGAGTTCAATGAAGTG
TTTCGTCAGGCTGATGTTGATGGCGATGGCGTTATTAACTTCCGTGATTT
TTGTACAGCCTATAGATCCTAAAAGCTTTCTAGACC
BS17320.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13898-PA | 456 | CG13898-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13898-RA | 625 | CG13898-RA | 79..535 | 17..473 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 803517..803973 | 473..17 | 2285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:07:31 has no hits.
BS17320.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:32 Download gff for
BS17320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13898-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:20:18 Download gff for
BS17320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13898-RA | 69..535 | 7..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:30 Download gff for
BS17320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13898-RA | 69..535 | 7..473 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:30 Download gff for
BS17320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 803517..803983 | 7..473 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:20:18 Download gff for
BS17320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 803517..803983 | 7..473 | 99 | | Minus |
BS17320.complete Sequence
488 bp assembled on 2007-05-30
GenBank Submission: KX801391
> BS17320.complete
GAAGTTATCAGTCGACATGGAATCACAAGACTACATATTGGCGAATGACG
ATCTTCAAGACATTTGCGAAGCCTTCGAGCTCTGTGATCCTGAGAAGACT
GGAAGAATCAGAGCAGACGATTTGGGAGAAGTGATGCGCACTCTCGGCCA
GAATCACACCGAGTCGGAAATCTACAGATATTCCGAGGGACTCGAGGGAG
ACGTCAACGGGTACATACAACTCACTGATTTCATCGATTTGATGACCAAA
ATCTACAGCGCGATGGGCAGCAGTGACTATTTGAAGGCAGCATATAATGC
CTTCGATTTTGATAAGGACGGTTTGGTAACATATGGCGAGCTACGTCACG
TTTTCATCAATCTTGGCGAAAAAATATCCGACGAAGAGTTCAATGAAGTG
TTTCGTCAGGCTGATGTTGATGGCGATGGCGTTATTAACTTCCGTGATTT
TTGTACAGCCTATAGATCCTAAAAGCTTTCTAGACCAT
BS17320.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13898-RA | 456 | CG13898-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13898-RA | 625 | CG13898-RA | 79..535 | 17..473 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 803517..803973 | 473..17 | 2285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:59:17 has no hits.
BS17320.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:52 Download gff for
BS17320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13898-RA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:27 Download gff for
BS17320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13898-RA | 69..535 | 7..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:39 Download gff for
BS17320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13898-RA | 79..532 | 17..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:52 Download gff for
BS17320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13898-RA | 18..483 | 7..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:22 Download gff for
BS17320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13898-RA | 79..532 | 17..470 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:22 Download gff for
BS17320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 803520..803973 | 17..470 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:39 Download gff for
BS17320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 803520..803973 | 17..470 | 100 | | Minus |
BS17320.pep Sequence
Translation from 16 to 471
> BS17320.pep
MESQDYILANDDLQDICEAFELCDPEKTGRIRADDLGEVMRTLGQNHTES
EIYRYSEGLEGDVNGYIQLTDFIDLMTKIYSAMGSSDYLKAAYNAFDFDK
DGLVTYGELRHVFINLGEKISDEEFNEVFRQADVDGDGVINFRDFCTAYR
S*
BS17320.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13898-PA | 151 | CG13898-PA | 1..151 | 1..151 | 794 | 100 | Plus |
Cam-PD | 149 | CG8472-PD | 5..148 | 8..151 | 297 | 39.6 | Plus |
Cam-PC | 149 | CG8472-PC | 5..148 | 8..151 | 297 | 39.6 | Plus |
Cam-PE | 149 | CG8472-PE | 5..148 | 8..151 | 297 | 39.6 | Plus |
Cam-PB | 149 | CG8472-PB | 5..148 | 8..151 | 297 | 39.6 | Plus |