Clone Sequence Records
BS17327.complete Sequence
503 bp assembled on 2010-02-09
GenBank Submission: KX806496
> BS17327.complete
GAAGTTATCAGTCGACATGGCCACAAAATCGGATAATGCTGACTCAAAAT
CGGACAAATCAAAGGAATCACTAGATGACGCATGGGCAATCCGACCCTGT
CATCTGTACAAGGAGGAGTACGACGACTGCACGAGTTTTAAGGCGCGCTT
CCACCAGTACTTTATATTTGGCAAGGACACAGATTGCTCCCAATGGCTAA
CTGATTACCGTAACTGCGAACGATATCAGCAGTCCAACGGGAACGATGTG
GCTGCCGGCAAAGCGGTGATTAAAAGCGAGGAGGAGCGCCGAAGGATCCG
CCTGCGCGCCCACTTTGCCAACGACACTTGGCAGAAGCGTAAGAAGCCAC
CGCTGGATTGGGCTGCTCCTCTGCCGGACTGGATGGAGAAGCGAAACGAG
AATACCTATCTTGAGCTTAAGCAAAAAGAGCTCTCTGGACAGGCGGCGCC
GCAAGGAGAGGAACGCTCGCTGTGCACGATCATGTGAAAGCTTTCTAGAC
CAT
BS17327.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-RA | 471 | CG15908-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-RA | 537 | CG15908-RA | 36..507 | 17..488 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6668309..6668708 | 89..488 | 2000 | 100 | Plus |
2R | 25286936 | 2R | 6668185..6668256 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:01:12 has no hits.
BS17327.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:29 Download gff for
BS17327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RB | 1..471 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:15 Download gff for
BS17327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9410-RD | 36..505 | 17..486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:04 Download gff for
BS17327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RA | 36..505 | 17..486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:29 Download gff for
BS17327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9410-RD | 23..507 | 5..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:51 Download gff for
BS17327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RA | 36..505 | 17..486 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:51 Download gff for
BS17327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6668185..6668256 | 17..88 | 100 | -> | Plus |
2R | 6668309..6668706 | 89..486 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:04 Download gff for
BS17327.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2555814..2556211 | 89..486 | 100 | | Plus |
arm_2R | 2555690..2555761 | 17..88 | 100 | -> | Plus |
BS17327.3prime Sequence
501 bp (501 high quality bases) assembled on 2007-05-15
> BS17327.3prime
ATGGTCTAGAAAGCTTTCACATGATCGTGCACAGCGAGCGTTCCTCTCCT
TGCGGCGCCGCCTGTCCAGAGAGCTCTTTTTGCTTAAGCTCAAGATAGGT
ATTCTCGTTTCGCTTCTCCATCCAGTCCGGCAGAGGAGCAGCCCAATCCA
GCGGTGGCTTCTTACGCTTCTGCCAAGTGTCGTTGGCAAAGTGGGCGCGC
AGGCGGATCCTTCGGCGCTCCTCCTCGCTTTTAATCACCGCTTTGCCGGC
AGCCACATCGTTCCCGTTGGACTGCTGATATCGTTCGCAGTTACGGTAAT
CAGTTAGCCATTGGGAGCAATCTGTGTCCTTGCCAAATATAAAGTACTGG
TGGAAGCGCGCCTTAAAACTCGTGCAGTCGTCGTACTCCTCCTTGTACAG
ATGACAGGGTCGGATTGCCCATGCGTCATCTAGTGATTCCTTTGATTTGT
CCGATTTTGAGTCAGCATTATCCGATTTTGTGGCCATGTCGACTGATAAC
T
BS17327.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-PA | 471 | CG15908-RA | 1..471 | 487..17 | 2355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-RA | 537 | CG15908-RA | 36..507 | 487..16 | 2360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6668309..6668708 | 415..16 | 2000 | 100 | Minus |
2R | 25286936 | 2R | 6668185..6668256 | 487..416 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:08:28 has no hits.
BS17327.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:32:09 Download gff for
BS17327.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-PA | 1..471 | 17..487 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:20 Download gff for
BS17327.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RA | 23..507 | 16..499 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:22 Download gff for
BS17327.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RA | 23..507 | 16..499 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:22 Download gff for
BS17327.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6668309..6668708 | 16..415 | 100 | | Minus |
2R | 6668172..6668256 | 416..499 | 94 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:20 Download gff for
BS17327.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2555814..2556213 | 16..415 | 100 | | Minus |
arm_2R | 2555677..2555761 | 416..499 | 94 | -> | Minus |
BS17327.5prime Sequence
501 bp (501 high quality bases) assembled on 2007-05-15
> BS17327.5prime
GAAGTTATCAGTCGACATGGCCACAAAATCGGATAATGCTGACTCAAAAT
CGGACAAATCAAAGGAATCACTAGATGACGCATGGGCAATCCGACCCTGT
CATCTGTACAAGGAGGAGTACGACGACTGCACGAGTTTTAAGGCGCGCTT
CCACCAGTACTTTATATTTGGCAAGGACACAGATTGCTCCCAATGGCTAA
CTGATTACCGTAACTGCGAACGATATCAGCAGTCCAACGGGAACGATGTG
GCTGCCGGCAAAGCGGTGATTAAAAGCGAGGAGGAGCGCCGAAGGATCCG
CCTGCGCGCCCACTTTGCCAACGACACTTGGCAGAAGCGTAAGAAGCCAC
CGCTGGATTGGGCTGCTCCTCTGCCGGACTGGATGGAGAAGCGAAACGAG
AATACCTATCTTGAGCTTAAGCAAAAAGAGCTCTCTGGACAGGCGGCGCC
GCAAGGAGAGGAACGCTCGCTGTGCACGATCATGTGAAAGCTTTCTAGAC
C
BS17327.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-PA | 471 | CG15908-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-RA | 537 | CG15908-RA | 36..507 | 17..488 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6668309..6668708 | 89..488 | 2000 | 100 | Plus |
2R | 25286936 | 2R | 6668185..6668256 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:35:52 has no hits.
BS17327.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:53 Download gff for
BS17327.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-PA | 1..471 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:16 Download gff for
BS17327.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RA | 23..507 | 5..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:35 Download gff for
BS17327.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RA | 23..507 | 5..488 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:35 Download gff for
BS17327.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6668172..6668256 | 5..88 | 94 | -> | Plus |
2R | 6668309..6668708 | 89..488 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:16 Download gff for
BS17327.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2555677..2555761 | 5..88 | 94 | -> | Plus |
arm_2R | 2555814..2556213 | 89..488 | 100 | | Plus |
BS17327.pep Sequence
Translation from 16 to 486
> BS17327.pep
MATKSDNADSKSDKSKESLDDAWAIRPCHLYKEEYDDCTSFKARFHQYFI
FGKDTDCSQWLTDYRNCERYQQSNGNDVAAGKAVIKSEEERRRIRLRAHF
ANDTWQKRKKPPLDWAAPLPDWMEKRNENTYLELKQKELSGQAAPQGEER
SLCTIM*
BS17327.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-PA | 156 | CG15908-PA | 1..156 | 1..156 | 852 | 100 | Plus |