Clone BS17327 Report

Search the DGRC for BS17327

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG15908-RA
Protein status:BS17327.pep: full length peptide match
Sequenced Size:503

Clone Sequence Records

BS17327.complete Sequence

503 bp assembled on 2010-02-09

GenBank Submission: KX806496

> BS17327.complete
GAAGTTATCAGTCGACATGGCCACAAAATCGGATAATGCTGACTCAAAAT
CGGACAAATCAAAGGAATCACTAGATGACGCATGGGCAATCCGACCCTGT
CATCTGTACAAGGAGGAGTACGACGACTGCACGAGTTTTAAGGCGCGCTT
CCACCAGTACTTTATATTTGGCAAGGACACAGATTGCTCCCAATGGCTAA
CTGATTACCGTAACTGCGAACGATATCAGCAGTCCAACGGGAACGATGTG
GCTGCCGGCAAAGCGGTGATTAAAAGCGAGGAGGAGCGCCGAAGGATCCG
CCTGCGCGCCCACTTTGCCAACGACACTTGGCAGAAGCGTAAGAAGCCAC
CGCTGGATTGGGCTGCTCCTCTGCCGGACTGGATGGAGAAGCGAAACGAG
AATACCTATCTTGAGCTTAAGCAAAAAGAGCTCTCTGGACAGGCGGCGCC
GCAAGGAGAGGAACGCTCGCTGTGCACGATCATGTGAAAGCTTTCTAGAC
CAT

BS17327.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-RA 471 CG15908-PA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-RA 537 CG15908-RA 36..507 17..488 2360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6668309..6668708 89..488 2000 100 Plus
2R 25286936 2R 6668185..6668256 17..88 360 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:01:12 has no hits.

BS17327.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:29 Download gff for BS17327.complete
Subject Subject Range Query Range Percent Splice Strand
CG15908-RB 1..471 17..487 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:15 Download gff for BS17327.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RD 36..505 17..486 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:04 Download gff for BS17327.complete
Subject Subject Range Query Range Percent Splice Strand
CG15908-RA 36..505 17..486 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:29 Download gff for BS17327.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RD 23..507 5..488 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:51 Download gff for BS17327.complete
Subject Subject Range Query Range Percent Splice Strand
CG15908-RA 36..505 17..486 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:51 Download gff for BS17327.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6668185..6668256 17..88 100 -> Plus
2R 6668309..6668706 89..486 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:04 Download gff for BS17327.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2555814..2556211 89..486 100   Plus
arm_2R 2555690..2555761 17..88 100 -> Plus

BS17327.3prime Sequence

501 bp (501 high quality bases) assembled on 2007-05-15

> BS17327.3prime
ATGGTCTAGAAAGCTTTCACATGATCGTGCACAGCGAGCGTTCCTCTCCT
TGCGGCGCCGCCTGTCCAGAGAGCTCTTTTTGCTTAAGCTCAAGATAGGT
ATTCTCGTTTCGCTTCTCCATCCAGTCCGGCAGAGGAGCAGCCCAATCCA
GCGGTGGCTTCTTACGCTTCTGCCAAGTGTCGTTGGCAAAGTGGGCGCGC
AGGCGGATCCTTCGGCGCTCCTCCTCGCTTTTAATCACCGCTTTGCCGGC
AGCCACATCGTTCCCGTTGGACTGCTGATATCGTTCGCAGTTACGGTAAT
CAGTTAGCCATTGGGAGCAATCTGTGTCCTTGCCAAATATAAAGTACTGG
TGGAAGCGCGCCTTAAAACTCGTGCAGTCGTCGTACTCCTCCTTGTACAG
ATGACAGGGTCGGATTGCCCATGCGTCATCTAGTGATTCCTTTGATTTGT
CCGATTTTGAGTCAGCATTATCCGATTTTGTGGCCATGTCGACTGATAAC
T

BS17327.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-PA 471 CG15908-RA 1..471 487..17 2355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-RA 537 CG15908-RA 36..507 487..16 2360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6668309..6668708 415..16 2000 100 Minus
2R 25286936 2R 6668185..6668256 487..416 360 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:08:28 has no hits.

BS17327.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:32:09 Download gff for BS17327.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15908-PA 1..471 17..487 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:20 Download gff for BS17327.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15908-RA 23..507 16..499 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:22 Download gff for BS17327.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15908-RA 23..507 16..499 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:22 Download gff for BS17327.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6668309..6668708 16..415 100   Minus
2R 6668172..6668256 416..499 94 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:20 Download gff for BS17327.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2555814..2556213 16..415 100   Minus
arm_2R 2555677..2555761 416..499 94 -> Minus

BS17327.5prime Sequence

501 bp (501 high quality bases) assembled on 2007-05-15

> BS17327.5prime
GAAGTTATCAGTCGACATGGCCACAAAATCGGATAATGCTGACTCAAAAT
CGGACAAATCAAAGGAATCACTAGATGACGCATGGGCAATCCGACCCTGT
CATCTGTACAAGGAGGAGTACGACGACTGCACGAGTTTTAAGGCGCGCTT
CCACCAGTACTTTATATTTGGCAAGGACACAGATTGCTCCCAATGGCTAA
CTGATTACCGTAACTGCGAACGATATCAGCAGTCCAACGGGAACGATGTG
GCTGCCGGCAAAGCGGTGATTAAAAGCGAGGAGGAGCGCCGAAGGATCCG
CCTGCGCGCCCACTTTGCCAACGACACTTGGCAGAAGCGTAAGAAGCCAC
CGCTGGATTGGGCTGCTCCTCTGCCGGACTGGATGGAGAAGCGAAACGAG
AATACCTATCTTGAGCTTAAGCAAAAAGAGCTCTCTGGACAGGCGGCGCC
GCAAGGAGAGGAACGCTCGCTGTGCACGATCATGTGAAAGCTTTCTAGAC
C

BS17327.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-PA 471 CG15908-RA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-RA 537 CG15908-RA 36..507 17..488 2360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6668309..6668708 89..488 2000 100 Plus
2R 25286936 2R 6668185..6668256 17..88 360 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:35:52 has no hits.

BS17327.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:53 Download gff for BS17327.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15908-PA 1..471 17..487 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:16 Download gff for BS17327.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15908-RA 23..507 5..488 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:35 Download gff for BS17327.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15908-RA 23..507 5..488 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:35 Download gff for BS17327.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6668172..6668256 5..88 94 -> Plus
2R 6668309..6668708 89..488 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:16 Download gff for BS17327.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2555677..2555761 5..88 94 -> Plus
arm_2R 2555814..2556213 89..488 100   Plus

BS17327.pep Sequence

Translation from 16 to 486

> BS17327.pep
MATKSDNADSKSDKSKESLDDAWAIRPCHLYKEEYDDCTSFKARFHQYFI
FGKDTDCSQWLTDYRNCERYQQSNGNDVAAGKAVIKSEEERRRIRLRAHF
ANDTWQKRKKPPLDWAAPLPDWMEKRNENTYLELKQKELSGQAAPQGEER
SLCTIM*

BS17327.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-PA 156 CG15908-PA 1..156 1..156 852 100 Plus