Clone BS17334 Report

Search the DGRC for BS17334

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG31909-RB
Protein status:BS17334.pep: full length peptide match
Sequenced Size:416

Clone Sequence Records

BS17334.complete Sequence

416 bp assembled on 2010-02-09

GenBank Submission: KX802188

> BS17334.complete
GAAGTTATCAGTCGACATGGAACCCTCGTTTTCCAATACTAACAAATCGG
AACTTCAGAACCAACTACGAGTAGAGAGAGCTCTGCAAGATAAATATTTA
AAAGAATTTTCTTCAATGGCGGATGAGCTAAATCACTTAATTGATGGCAC
TACTCCCAGCCATATTGAGACTTATGAATATTTGGACACTGTCGACACTG
AAAGCGGTCGTTCTCTCGAAGAAGAGAAAAAGTTAACTAACTTTTTCTAT
AAATTGAAGAGCGATCTACAGAAATTATATAGAGAAATCGTAGAGAACCC
AAAATATTTAAACGAAATCAGGGATTCAACTATTATAAGGGACAATATAG
ATTTACTGGATGAAGTAGACGCTTTTGAAGGTTCGATGAATATGCTTTGA
AAGCTTTCTAGACCAT

BS17334.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-RC 384 CG31909-PC 1..384 17..400 1920 100 Plus
CG31909-RB 384 CG31909-PB 1..384 17..400 1920 100 Plus
CG43800-RB 384 CG43800-PB 1..384 17..400 1860 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-RC 628 CG31909-RC 162..545 17..400 1920 100 Plus
CG31909-RB 555 CG31909-RB 89..472 17..400 1920 100 Plus
CG43800-RB 505 CG43800-RB 89..472 17..400 1860 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7257732..7258115 17..400 1920 100 Plus
2L 23513712 2L 7232227..7232610 400..17 1860 99 Minus
Blast to na_te.dros performed 2014-11-28 02:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 6855..7002 219..361 116 55.4 Plus

BS17334.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:11 Download gff for BS17334.complete
Subject Subject Range Query Range Percent Splice Strand
CG31909-RA 1..384 17..400 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:37 Download gff for BS17334.complete
Subject Subject Range Query Range Percent Splice Strand
CG31909-RC 162..544 17..399 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:46 Download gff for BS17334.complete
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..471 17..399 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:12 Download gff for BS17334.complete
Subject Subject Range Query Range Percent Splice Strand
CG31909-RA 95..478 17..400 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:54 Download gff for BS17334.complete
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..471 17..399 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:54 Download gff for BS17334.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7257732..7258114 17..399 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:46 Download gff for BS17334.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7257732..7258114 17..399 100   Plus

BS17334.3prime Sequence

414 bp (414 high quality bases) assembled on 2007-05-15

> BS17334.3prime
ATGGTCTAGAAAGCTTTCAAAGCATATTCATCGAACCTTCAAAAGCGTCT
ACTTCATCCAGTAAATCTATATTGTCCCTTATAATAGTTGAATCCCTGAT
TTCGTTTAAATATTTTGGGTTCTCTACGATTTCTCTATATAATTTCTGTA
GATCGCTCTTCAATTTATAGAAAAAGTTAGTTAACTTTTTCTCTTCTTCG
AGAGAACGACCGCTTTCAGTGTCGACAGTGTCCAAATATTCATAAGTCTC
AATATGGCTGGGAGTAGTGCCATCAATTAAGTGATTTAGCTCATCCGCCA
TTGAAGAAAATTCTTTTAAATATTTATCTTGCAGAGCTCTCTCTACTCGT
AGTTGGTTCTGAAGTTCCGATTTGTTAGTATTGGAAAACGAGGGTTCCAT
GTCGACTGATAACT

BS17334.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-PA 384 CG31909-RA 1..384 400..17 1920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-RC 628 CG31909-RC 162..545 400..17 1920 100 Minus
CG31909-RB 555 CG31909-RB 89..472 400..17 1920 100 Minus
CG43800-RB 505 CG43800-RB 89..472 400..17 1860 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7257732..7258115 400..17 1920 100 Minus
2L 23513712 2L 7232227..7232610 17..400 1860 99 Plus
Blast to na_te.dros performed 2015-02-13 06:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 6855..7002 198..56 116 55.4 Minus

BS17334.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:35:36 Download gff for BS17334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-PA 1..384 17..400 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:51:14 Download gff for BS17334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..472 17..400 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:12:02 Download gff for BS17334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..472 17..400 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:12:02 Download gff for BS17334.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7257732..7258109 23..400 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:51:14 Download gff for BS17334.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7257732..7258109 23..400 100 <- Minus

BS17334.5prime Sequence

414 bp (414 high quality bases) assembled on 2007-05-15

> BS17334.5prime
GAAGTTATCAGTCGACATGGAACCCTCGTTTTCCAATACTAACAAATCGG
AACTTCAGAACCAACTACGAGTAGAGAGAGCTCTGCAAGATAAATATTTA
AAAGAATTTTCTTCAATGGCGGATGAGCTAAATCACTTAATTGATGGCAC
TACTCCCAGCCATATTGAGACTTATGAATATTTGGACACTGTCGACACTG
AAAGCGGTCGTTCTCTCGAAGAAGAGAAAAAGTTAACTAACTTTTTCTAT
AAATTGAAGAGCGATCTACAGAAATTATATAGAGAAATCGTAGAGAACCC
AAAATATTTAAACGAAATCAGGGATTCAACTATTATAAGGGACAATATAG
ATTTACTGGATGAAGTAGACGCTTTTGAAGGTTCGATGAATATGCTTTGA
AAGCTTTCTAGACC

BS17334.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-PA 384 CG31909-RA 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-RC 628 CG31909-RC 162..545 17..400 1920 100 Plus
CG31909-RB 555 CG31909-RB 89..472 17..400 1920 100 Plus
CG43800-RB 505 CG43800-RB 89..472 17..400 1860 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7257732..7258115 17..400 1920 100 Plus
2L 23513712 2L 7232227..7232610 400..17 1860 99 Minus
Blast to na_te.dros performed 2015-02-12 15:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 6855..7002 219..361 116 55.4 Plus

BS17334.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:28:15 Download gff for BS17334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-PA 1..384 17..400 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:56 Download gff for BS17334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..472 17..400 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:51 Download gff for BS17334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..472 17..400 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:51 Download gff for BS17334.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7257732..7258109 17..394 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:56 Download gff for BS17334.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7257732..7258109 17..394 100 <- Plus

BS17334.pep Sequence

Translation from 16 to 399

> BS17334.pep
MEPSFSNTNKSELQNQLRVERALQDKYLKEFSSMADELNHLIDGTTPSHI
ETYEYLDTVDTESGRSLEEEKKLTNFFYKLKSDLQKLYREIVENPKYLNE
IRDSTIIRDNIDLLDEVDAFEGSMNML*

BS17334.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-PC 127 CG31909-PC 1..127 1..127 646 100 Plus
CG31909-PB 127 CG31909-PB 1..127 1..127 646 100 Plus
CG43800-PB 127 CG43800-PB 1..127 1..127 638 98.4 Plus
CG43800-PA 127 CG43800-PA 1..127 1..127 638 98.4 Plus