Clone Sequence Records
BS17334.complete Sequence
416 bp assembled on 2010-02-09
GenBank Submission: KX802188
> BS17334.complete
GAAGTTATCAGTCGACATGGAACCCTCGTTTTCCAATACTAACAAATCGG
AACTTCAGAACCAACTACGAGTAGAGAGAGCTCTGCAAGATAAATATTTA
AAAGAATTTTCTTCAATGGCGGATGAGCTAAATCACTTAATTGATGGCAC
TACTCCCAGCCATATTGAGACTTATGAATATTTGGACACTGTCGACACTG
AAAGCGGTCGTTCTCTCGAAGAAGAGAAAAAGTTAACTAACTTTTTCTAT
AAATTGAAGAGCGATCTACAGAAATTATATAGAGAAATCGTAGAGAACCC
AAAATATTTAAACGAAATCAGGGATTCAACTATTATAAGGGACAATATAG
ATTTACTGGATGAAGTAGACGCTTTTGAAGGTTCGATGAATATGCTTTGA
AAGCTTTCTAGACCAT
BS17334.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-RC | 384 | CG31909-PC | 1..384 | 17..400 | 1920 | 100 | Plus |
CG31909-RB | 384 | CG31909-PB | 1..384 | 17..400 | 1920 | 100 | Plus |
CG43800-RB | 384 | CG43800-PB | 1..384 | 17..400 | 1860 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-RC | 628 | CG31909-RC | 162..545 | 17..400 | 1920 | 100 | Plus |
CG31909-RB | 555 | CG31909-RB | 89..472 | 17..400 | 1920 | 100 | Plus |
CG43800-RB | 505 | CG43800-RB | 89..472 | 17..400 | 1860 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7257732..7258115 | 17..400 | 1920 | 100 | Plus |
2L | 23513712 | 2L | 7232227..7232610 | 400..17 | 1860 | 99 | Minus |
Blast to na_te.dros performed 2014-11-28 02:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 6855..7002 | 219..361 | 116 | 55.4 | Plus |
BS17334.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:11 Download gff for
BS17334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RA | 1..384 | 17..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:37 Download gff for
BS17334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RC | 162..544 | 17..399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:46 Download gff for
BS17334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RB | 89..471 | 17..399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:12 Download gff for
BS17334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RA | 95..478 | 17..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:54 Download gff for
BS17334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RB | 89..471 | 17..399 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:54 Download gff for
BS17334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7257732..7258114 | 17..399 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:46 Download gff for
BS17334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7257732..7258114 | 17..399 | 100 | | Plus |
BS17334.3prime Sequence
414 bp (414 high quality bases) assembled on 2007-05-15
> BS17334.3prime
ATGGTCTAGAAAGCTTTCAAAGCATATTCATCGAACCTTCAAAAGCGTCT
ACTTCATCCAGTAAATCTATATTGTCCCTTATAATAGTTGAATCCCTGAT
TTCGTTTAAATATTTTGGGTTCTCTACGATTTCTCTATATAATTTCTGTA
GATCGCTCTTCAATTTATAGAAAAAGTTAGTTAACTTTTTCTCTTCTTCG
AGAGAACGACCGCTTTCAGTGTCGACAGTGTCCAAATATTCATAAGTCTC
AATATGGCTGGGAGTAGTGCCATCAATTAAGTGATTTAGCTCATCCGCCA
TTGAAGAAAATTCTTTTAAATATTTATCTTGCAGAGCTCTCTCTACTCGT
AGTTGGTTCTGAAGTTCCGATTTGTTAGTATTGGAAAACGAGGGTTCCAT
GTCGACTGATAACT
BS17334.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-PA | 384 | CG31909-RA | 1..384 | 400..17 | 1920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-RC | 628 | CG31909-RC | 162..545 | 400..17 | 1920 | 100 | Minus |
CG31909-RB | 555 | CG31909-RB | 89..472 | 400..17 | 1920 | 100 | Minus |
CG43800-RB | 505 | CG43800-RB | 89..472 | 400..17 | 1860 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7257732..7258115 | 400..17 | 1920 | 100 | Minus |
2L | 23513712 | 2L | 7232227..7232610 | 17..400 | 1860 | 99 | Plus |
Blast to na_te.dros performed 2015-02-13 06:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 6855..7002 | 198..56 | 116 | 55.4 | Minus |
BS17334.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:35:36 Download gff for
BS17334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-PA | 1..384 | 17..400 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:51:14 Download gff for
BS17334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RB | 89..472 | 17..400 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:12:02 Download gff for
BS17334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RB | 89..472 | 17..400 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:12:02 Download gff for
BS17334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7257732..7258109 | 23..400 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:51:14 Download gff for
BS17334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7257732..7258109 | 23..400 | 100 | <- | Minus |
BS17334.5prime Sequence
414 bp (414 high quality bases) assembled on 2007-05-15
> BS17334.5prime
GAAGTTATCAGTCGACATGGAACCCTCGTTTTCCAATACTAACAAATCGG
AACTTCAGAACCAACTACGAGTAGAGAGAGCTCTGCAAGATAAATATTTA
AAAGAATTTTCTTCAATGGCGGATGAGCTAAATCACTTAATTGATGGCAC
TACTCCCAGCCATATTGAGACTTATGAATATTTGGACACTGTCGACACTG
AAAGCGGTCGTTCTCTCGAAGAAGAGAAAAAGTTAACTAACTTTTTCTAT
AAATTGAAGAGCGATCTACAGAAATTATATAGAGAAATCGTAGAGAACCC
AAAATATTTAAACGAAATCAGGGATTCAACTATTATAAGGGACAATATAG
ATTTACTGGATGAAGTAGACGCTTTTGAAGGTTCGATGAATATGCTTTGA
AAGCTTTCTAGACC
BS17334.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:28:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-PA | 384 | CG31909-RA | 1..384 | 17..400 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-RC | 628 | CG31909-RC | 162..545 | 17..400 | 1920 | 100 | Plus |
CG31909-RB | 555 | CG31909-RB | 89..472 | 17..400 | 1920 | 100 | Plus |
CG43800-RB | 505 | CG43800-RB | 89..472 | 17..400 | 1860 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7257732..7258115 | 17..400 | 1920 | 100 | Plus |
2L | 23513712 | 2L | 7232227..7232610 | 400..17 | 1860 | 99 | Minus |
Blast to na_te.dros performed 2015-02-12 15:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 6855..7002 | 219..361 | 116 | 55.4 | Plus |
BS17334.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:28:15 Download gff for
BS17334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-PA | 1..384 | 17..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:56 Download gff for
BS17334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RB | 89..472 | 17..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:51 Download gff for
BS17334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RB | 89..472 | 17..400 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:51 Download gff for
BS17334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7257732..7258109 | 17..394 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:56 Download gff for
BS17334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7257732..7258109 | 17..394 | 100 | <- | Plus |
BS17334.pep Sequence
Translation from 16 to 399
> BS17334.pep
MEPSFSNTNKSELQNQLRVERALQDKYLKEFSSMADELNHLIDGTTPSHI
ETYEYLDTVDTESGRSLEEEKKLTNFFYKLKSDLQKLYREIVENPKYLNE
IRDSTIIRDNIDLLDEVDAFEGSMNML*
BS17334.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-PC | 127 | CG31909-PC | 1..127 | 1..127 | 646 | 100 | Plus |
CG31909-PB | 127 | CG31909-PB | 1..127 | 1..127 | 646 | 100 | Plus |
CG43800-PB | 127 | CG43800-PB | 1..127 | 1..127 | 638 | 98.4 | Plus |
CG43800-PA | 127 | CG43800-PA | 1..127 | 1..127 | 638 | 98.4 | Plus |