Clone Sequence Records
BS17335.complete Sequence
500 bp assembled on 2010-02-09
GenBank Submission: KX804506
> BS17335.complete
GAAGTTATCAGTCGACATGAGCATTCAAAGAAGCGAAAAGGAGGCCGCGG
GCCAGCTACTGGATGACTTGTACCTGGACATGTTCCACCTCGTTGAGGAG
CACACCCAGTGTCGGATAAATTTGGAGCGATGTAACGCCAGTGGGGCGAT
TCTCCTGGCCCGCACTAGATTTCAGCACGGAGGCAGCCAGTGCGTGTCCA
CGGCCCAGATTCCCACGGAGAACAGTGCCGAGTTTAACGCCCTCTGCCGG
GTCGTGGACTCCACGGATGGCGTCTGCATCGAGCGACAGGCGGTTGACAA
GTCCAAGGGCTTCGTGGAGCCCCTGCATTGGTTCTCGGTACTGCCACCGA
TGAGCTTGCGCAATGCTGTTAACAAGTTCAAGGACTGCATAGAGCTGGTC
GCCGAGAGCACTAATCTGCAGCGGCAGCTAGGAGAAGCGCTGGATTCGAT
CACAAAGCTGCGAAGGAGTGCCCTGCTTAGCTAGAAGCTTTCTAGACCAT
BS17335.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-RB | 468 | CG14671-PB | 1..468 | 17..484 | 2340 | 100 | Plus |
| CG14671-RA | 468 | CG14671-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-RB | 774 | CG14671-RB | 91..559 | 17..485 | 2345 | 100 | Plus |
| CG14671-RA | 629 | CG14671-RA | 91..559 | 17..485 | 2345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5564405..5564725 | 337..17 | 1605 | 100 | Minus |
| 3R | 32079331 | 3R | 5564192..5564340 | 485..337 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:01:50 has no hits.
BS17335.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:40 Download gff for
BS17335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:19 Download gff for
BS17335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:22 Download gff for
BS17335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 91..558 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:40 Download gff for
BS17335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:06 Download gff for
BS17335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 91..558 | 17..484 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:06 Download gff for
BS17335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5564193..5564340 | 337..484 | 100 | <- | Minus |
| 3R | 5564406..5564725 | 17..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:22 Download gff for
BS17335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1389915..1390062 | 337..484 | 100 | <- | Minus |
| arm_3R | 1390128..1390447 | 17..336 | 100 | | Minus |
BS17335.5prime Sequence
498 bp (498 high quality bases) assembled on 2007-05-15
> BS17335.5prime
GAAGTTATCAGTCGACATGAGCATTCAAAGAAGCGAAAAGGAGGCCGCGG
GCCAGCTACTGGATGACTTGTACCTGGACATGTTCCACCTCGTTGAGGAG
CACACCCAGTGTCGGATAAATTTGGAGCGATGTAACGCCAGTGGGGCGAT
TCTCCTGGCCCGCACTAGATTTCAGCACGGAGGCAGCCAGTGCGTGTCCA
CGGCCCAGATTCCCACGGAGAACAGTGCCGAGTTTAACGCCCTCTGCCGG
GTCGTGGACTCCACGGATGGCGTCTGCATCGAGCGACAGGCGGTTGACAA
GTCCAAGGGCTTCGTGGAGCCCCTGCATTGGTTCTCGGTACTGCCACCGA
TGAGCTTGCGCAATGCTGTTAACAAGTTCAAGGACTGCATAGAGCTGGTC
GCCGAGAGCACTAATCTGCAGCGGCAGCTAGGAGAAGCGCTGGATTCGAT
CACAAAGCTGCGAAGGAGTGCCCTGCTTAGCTAGAAGCTTTCTAGACC
BS17335.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-PA | 468 | CG14671-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-RB | 774 | CG14671-RB | 91..559 | 17..485 | 2345 | 100 | Plus |
| CG14671-RA | 629 | CG14671-RA | 91..559 | 17..485 | 2345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5564405..5564725 | 337..17 | 1605 | 100 | Minus |
| 3R | 32079331 | 3R | 5564192..5564340 | 485..337 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:59:15 has no hits.
BS17335.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:28:26 Download gff for
BS17335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-PA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:26 Download gff for
BS17335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 81..564 | 8..490 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:42 Download gff for
BS17335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 81..564 | 8..490 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:42 Download gff for
BS17335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5564406..5564735 | 8..336 | 98 | | Minus |
| 3R | 5564187..5564340 | 337..490 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:26 Download gff for
BS17335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1389909..1390062 | 337..490 | 98 | <- | Minus |
| arm_3R | 1390128..1390457 | 8..336 | 98 | | Minus |
BS17335.3prime Sequence
498 bp (498 high quality bases) assembled on 2007-05-15
> BS17335.3prime
ATGGTCTAGAAAGCTTCTAGCTAAGCAGGGCACTCCTTCGCAGCTTTGTG
ATCGAATCCAGCGCTTCTCCTAGCTGCCGCTGCAGATTAGTGCTCTCGGC
GACCAGCTCTATGCAGTCCTTGAACTTGTTAACAGCATTGCGCAAGCTCA
TCGGTGGCAGTACCGAGAACCAATGCAGGGGCTCCACGAAGCCCTTGGAC
TTGTCAACCGCCTGTCGCTCGATGCAGACGCCATCCGTGGAGTCCACGAC
CCGGCAGAGGGCGTTAAACTCGGCACTGTTCTCCGTGGGAATCTGGGCCG
TGGACACGCACTGGCTGCCTCCGTGCTGAAATCTAGTGCGGGCCAGGAGA
ATCGCCCCACTGGCGTTACATCGCTCCAAATTTATCCGACACTGGGTGTG
CTCCTCAACGAGGTGGAACATGTCCAGGTACAAGTCATCCAGTAGCTGGC
CCGCGGCCTCCTTTTCGCTTCTTTGAATGCTCATGTCGACTGATAACT
BS17335.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-PA | 468 | CG14671-RA | 1..468 | 484..17 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:19:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-RB | 774 | CG14671-RB | 91..559 | 484..16 | 2345 | 100 | Minus |
| CG14671-RA | 629 | CG14671-RA | 91..559 | 484..16 | 2345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5564405..5564725 | 164..484 | 1605 | 100 | Plus |
| 3R | 32079331 | 3R | 5564192..5564340 | 16..164 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:19:53 has no hits.
BS17335.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:35:46 Download gff for
BS17335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-PA | 1..468 | 17..484 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:21:21 Download gff for
BS17335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 81..564 | 11..493 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:11 Download gff for
BS17335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 81..564 | 11..493 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:11 Download gff for
BS17335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5564187..5564340 | 11..164 | 98 | <- | Plus |
| 3R | 5564406..5564735 | 165..493 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:21:21 Download gff for
BS17335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1389909..1390062 | 11..164 | 98 | <- | Plus |
| arm_3R | 1390128..1390457 | 165..493 | 98 | | Plus |
BS17335.pep Sequence
Translation from 16 to 483
> BS17335.pep
MSIQRSEKEAAGQLLDDLYLDMFHLVEEHTQCRINLERCNASGAILLART
RFQHGGSQCVSTAQIPTENSAEFNALCRVVDSTDGVCIERQAVDKSKGFV
EPLHWFSVLPPMSLRNAVNKFKDCIELVAESTNLQRQLGEALDSITKLRR
SALLS*
BS17335.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-PB | 155 | CG14671-PB | 1..155 | 1..155 | 792 | 100 | Plus |
| CG14671-PA | 155 | CG14671-PA | 1..155 | 1..155 | 792 | 100 | Plus |
