Clone Sequence Records
BS17337.complete Sequence
347 bp assembled on 2010-02-09
GenBank Submission: KX803871
> BS17337.complete
GAAGTTATCAGTCGACATGGACAGCCCAGTAAAACAGCGCCTAAAACCCA
AGAAGCTGGACAAACATCCAGGAACTCAGAAGGTCGAGTTCAAAAAGGAT
ATCATCGATGAGGTAGCGGATCAGTCGGTTGAATACGATTACATGAAGTA
TCCCAGCAATAAAGAGAAGGCAAAACTCCTGAAAGGCGTTAAACCATCGA
AAAGTGTCACATTCAAGACGGTGGTGGAGCTGGTGACCTATTCGGAAAAC
TGGAAGATGAAGATGAGCGAGAGCAGGCTGCGCTCGGAGGATGAGCAGCT
GAAGAGCTCCCAAAAATATCGCAACTACTGAAAGCTTTCTAGACCAT
BS17337.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-RA | 315 | CG15705-PA | 1..315 | 17..331 | 1575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:40:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-RA | 465 | CG15705-RA | 71..395 | 15..339 | 1595 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16281020..16281303 | 15..298 | 1420 | 100 | Plus |
2R | 25286936 | 2R | 16281517..16281559 | 297..339 | 185 | 95.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:40:10 has no hits.
BS17337.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:07 Download gff for
BS17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 1..315 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:59 Download gff for
BS17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 73..386 | 17..330 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:11 Download gff for
BS17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 73..386 | 17..330 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:07 Download gff for
BS17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 66..395 | 8..339 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:16 Download gff for
BS17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 73..386 | 17..330 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:16 Download gff for
BS17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16281022..16281303 | 17..298 | 100 | -> | Plus |
2R | 16281519..16281550 | 299..330 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:11 Download gff for
BS17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12168527..12168808 | 17..298 | 100 | -> | Plus |
arm_2R | 12169024..12169055 | 299..330 | 100 | | Plus |
BS17337.5prime Sequence
345 bp (345 high quality bases) assembled on 2007-05-15
> BS17337.5prime
GAAGTTATCAGTCGACATGGACAGCCCAGTAAAACAGCGCCTAAAACCCA
AGAAGCTGGACAAACATCCAGGAACTCAGAAGGTCGAGTTCAAAAAGGAT
ATCATCGATGAGGTAGCGGATCAGTCGGTTGAATACGATTACATGAAGTA
TCCCAGCAATAAAGAGAAGGCAAAACTCCTGAAAGGCGTTAAACCATCGA
AAAGTGTCACATTCAAGACGGTGGTGGAGCTGGTGACCTATTCGGAAAAC
TGGAAGATGAAGATGAGCGAGAGCAGGCTGCGCTCGGAGGATGAGCAGCT
GAAGAGCTCCCAAAAATATCGCAACTACTGAAAGCTTTCTAGACC
BS17337.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-PA | 315 | CG15705-RA | 1..315 | 17..331 | 1575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-RA | 465 | CG15705-RA | 71..395 | 15..339 | 1595 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16281020..16281303 | 15..298 | 1420 | 100 | Plus |
2R | 25286936 | 2R | 16281517..16281559 | 297..339 | 185 | 95.3 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:56:40 has no hits.
BS17337.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:25:01 Download gff for
BS17337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-PA | 1..315 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:56 Download gff for
BS17337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 66..395 | 8..339 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:08 Download gff for
BS17337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 66..395 | 8..339 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:08 Download gff for
BS17337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16281015..16281303 | 8..298 | 98 | -> | Plus |
2R | 16281519..16281559 | 299..339 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:56 Download gff for
BS17337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12168520..12168808 | 8..298 | 98 | -> | Plus |
arm_2R | 12169024..12169064 | 299..339 | 95 | | Plus |
BS17337.3prime Sequence
345 bp (345 high quality bases) assembled on 2007-05-15
> BS17337.3prime
ATGGTCTAGAAAGCTTTCAGTAGTTGCGATATTTTTGGGAGCTCTTCAGC
TGCTCATCCTCCGAGCGCAGCCTGCTCTCGCTCATCTTCATCTTCCAGTT
TTCCGAATAGGTCACCAGCTCCACCACCGTCTTGAATGTGACACTTTTCG
ATGGTTTAACGCCTTTCAGGAGTTTTGCCTTCTCTTTATTGCTGGGATAC
TTCATGTAATCGTATTCAACCGACTGATCCGCTACCTCATCGATGATATC
CTTTTTGAACTCGACCTTCTGAGTTCCTGGATGTTTGTCCAGCTTCTTGG
GTTTTAGGCGCTGTTTTACTGGGCTGTCCATGTCGACTGATAACT
BS17337.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-PA | 315 | CG15705-RA | 1..315 | 331..17 | 1575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-RA | 465 | CG15705-RA | 71..395 | 333..9 | 1595 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:43:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16281020..16281303 | 333..50 | 1420 | 100 | Minus |
2R | 25286936 | 2R | 16281517..16281559 | 51..9 | 185 | 95.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:43:33 has no hits.
BS17337.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:32:18 Download gff for
BS17337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-PA | 1..315 | 17..331 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:38 Download gff for
BS17337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 66..395 | 9..340 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:49 Download gff for
BS17337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 66..395 | 9..340 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:49 Download gff for
BS17337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16281015..16281303 | 50..340 | 98 | -> | Minus |
2R | 16281519..16281559 | 9..49 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:38 Download gff for
BS17337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12168520..12168808 | 50..340 | 98 | -> | Minus |
arm_2R | 12169024..12169064 | 9..49 | 95 | | Minus |
BS17337.pep Sequence
Translation from 16 to 330
> BS17337.pep
MDSPVKQRLKPKKLDKHPGTQKVEFKKDIIDEVADQSVEYDYMKYPSNKE
KAKLLKGVKPSKSVTFKTVVELVTYSENWKMKMSESRLRSEDEQLKSSQK
YRNY*
BS17337.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-PA | 104 | CG15705-PA | 1..104 | 1..104 | 534 | 100 | Plus |