Clone BS17337 Report

Search the DGRC for BS17337

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG15705-RA
Protein status:BS17337.pep: full length peptide match
Sequenced Size:347

Clone Sequence Records

BS17337.complete Sequence

347 bp assembled on 2010-02-09

GenBank Submission: KX803871

> BS17337.complete
GAAGTTATCAGTCGACATGGACAGCCCAGTAAAACAGCGCCTAAAACCCA
AGAAGCTGGACAAACATCCAGGAACTCAGAAGGTCGAGTTCAAAAAGGAT
ATCATCGATGAGGTAGCGGATCAGTCGGTTGAATACGATTACATGAAGTA
TCCCAGCAATAAAGAGAAGGCAAAACTCCTGAAAGGCGTTAAACCATCGA
AAAGTGTCACATTCAAGACGGTGGTGGAGCTGGTGACCTATTCGGAAAAC
TGGAAGATGAAGATGAGCGAGAGCAGGCTGCGCTCGGAGGATGAGCAGCT
GAAGAGCTCCCAAAAATATCGCAACTACTGAAAGCTTTCTAGACCAT

BS17337.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15705-RA 315 CG15705-PA 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15705-RA 465 CG15705-RA 71..395 15..339 1595 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16281020..16281303 15..298 1420 100 Plus
2R 25286936 2R 16281517..16281559 297..339 185 95.3 Plus
Blast to na_te.dros performed on 2014-11-28 04:40:10 has no hits.

BS17337.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:07 Download gff for BS17337.complete
Subject Subject Range Query Range Percent Splice Strand
CG15705-RA 1..315 17..331 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:59 Download gff for BS17337.complete
Subject Subject Range Query Range Percent Splice Strand
CG15705-RA 73..386 17..330 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:11 Download gff for BS17337.complete
Subject Subject Range Query Range Percent Splice Strand
CG15705-RA 73..386 17..330 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:07 Download gff for BS17337.complete
Subject Subject Range Query Range Percent Splice Strand
CG15705-RA 66..395 8..339 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:16 Download gff for BS17337.complete
Subject Subject Range Query Range Percent Splice Strand
CG15705-RA 73..386 17..330 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:16 Download gff for BS17337.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16281022..16281303 17..298 100 -> Plus
2R 16281519..16281550 299..330 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:11 Download gff for BS17337.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12168527..12168808 17..298 100 -> Plus
arm_2R 12169024..12169055 299..330 100   Plus

BS17337.5prime Sequence

345 bp (345 high quality bases) assembled on 2007-05-15

> BS17337.5prime
GAAGTTATCAGTCGACATGGACAGCCCAGTAAAACAGCGCCTAAAACCCA
AGAAGCTGGACAAACATCCAGGAACTCAGAAGGTCGAGTTCAAAAAGGAT
ATCATCGATGAGGTAGCGGATCAGTCGGTTGAATACGATTACATGAAGTA
TCCCAGCAATAAAGAGAAGGCAAAACTCCTGAAAGGCGTTAAACCATCGA
AAAGTGTCACATTCAAGACGGTGGTGGAGCTGGTGACCTATTCGGAAAAC
TGGAAGATGAAGATGAGCGAGAGCAGGCTGCGCTCGGAGGATGAGCAGCT
GAAGAGCTCCCAAAAATATCGCAACTACTGAAAGCTTTCTAGACC

BS17337.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15705-PA 315 CG15705-RA 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15705-RA 465 CG15705-RA 71..395 15..339 1595 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16281020..16281303 15..298 1420 100 Plus
2R 25286936 2R 16281517..16281559 297..339 185 95.3 Plus
Blast to na_te.dros performed on 2015-02-04 20:56:40 has no hits.

BS17337.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:25:01 Download gff for BS17337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15705-PA 1..315 17..331 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:56 Download gff for BS17337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15705-RA 66..395 8..339 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:08 Download gff for BS17337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15705-RA 66..395 8..339 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:08 Download gff for BS17337.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16281015..16281303 8..298 98 -> Plus
2R 16281519..16281559 299..339 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:56 Download gff for BS17337.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12168520..12168808 8..298 98 -> Plus
arm_2R 12169024..12169064 299..339 95   Plus

BS17337.3prime Sequence

345 bp (345 high quality bases) assembled on 2007-05-15

> BS17337.3prime
ATGGTCTAGAAAGCTTTCAGTAGTTGCGATATTTTTGGGAGCTCTTCAGC
TGCTCATCCTCCGAGCGCAGCCTGCTCTCGCTCATCTTCATCTTCCAGTT
TTCCGAATAGGTCACCAGCTCCACCACCGTCTTGAATGTGACACTTTTCG
ATGGTTTAACGCCTTTCAGGAGTTTTGCCTTCTCTTTATTGCTGGGATAC
TTCATGTAATCGTATTCAACCGACTGATCCGCTACCTCATCGATGATATC
CTTTTTGAACTCGACCTTCTGAGTTCCTGGATGTTTGTCCAGCTTCTTGG
GTTTTAGGCGCTGTTTTACTGGGCTGTCCATGTCGACTGATAACT

BS17337.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG15705-PA 315 CG15705-RA 1..315 331..17 1575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15705-RA 465 CG15705-RA 71..395 333..9 1595 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16281020..16281303 333..50 1420 100 Minus
2R 25286936 2R 16281517..16281559 51..9 185 95.3 Minus
Blast to na_te.dros performed on 2015-02-11 16:43:33 has no hits.

BS17337.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:32:18 Download gff for BS17337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15705-PA 1..315 17..331 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:38 Download gff for BS17337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15705-RA 66..395 9..340 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:49 Download gff for BS17337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15705-RA 66..395 9..340 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:49 Download gff for BS17337.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16281015..16281303 50..340 98 -> Minus
2R 16281519..16281559 9..49 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:38 Download gff for BS17337.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12168520..12168808 50..340 98 -> Minus
arm_2R 12169024..12169064 9..49 95   Minus

BS17337.pep Sequence

Translation from 16 to 330

> BS17337.pep
MDSPVKQRLKPKKLDKHPGTQKVEFKKDIIDEVADQSVEYDYMKYPSNKE
KAKLLKGVKPSKSVTFKTVVELVTYSENWKMKMSESRLRSEDEQLKSSQK
YRNY*

BS17337.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15705-PA 104 CG15705-PA 1..104 1..104 534 100 Plus