Clone Sequence Records
BS17344.complete Sequence
509 bp assembled on 2010-02-09
GenBank Submission: KX801849
> BS17344.complete
GAAGTTATCAGTCGACATGGTTACTGCCGCTTTAAATGAAGAGCCATCAT
ACGCCTTCTTCTTGGGATGCACGGGGGCTGCAGTTGCGATTATATTCACG
ACCTTGGGAGCGTCTTACGGAACAGCAGTTTCCGGTGTCGGAATCGCCAA
GATGGCGGTCAATCGACCGGATATGATCATGAAGGCCATCATTCCGGTCG
TAATGGCGGGAATTATTGCGATCTACGGATTGGTGGTATCCGTCCTGATA
GCCGGATCGATTGGCGATGATTATACGATGGAAGACAGTTATGTGCATCT
GGGCGCCGGATTGTCCGTCGGACTTCCAGGACTCACCGCAGGAGTAGCCA
TTGGAATCGCAGGCGATGCTGGAGTCCGGGGTACCGCCGAACAGCCACGC
CTTTTCGTGGGCATGGTCCTGATCCTGATCTTCGCCGAGGTCCTGGCTCT
ATACGGCCTCATTGTGGCCATCTATTTGTACACTAAGCTTTAGAAGCTTT
CTAGACCAT
BS17344.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-2-RA | 477 | CG32089-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Vha16-3-RB | 477 | CG32090-PB | 151..474 | 164..487 | 375 | 74.4 | Plus |
Vha16-3-RA | 477 | CG32090-PA | 151..474 | 164..487 | 375 | 74.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-2-RA | 595 | CG32089-RA | 41..517 | 17..493 | 2385 | 100 | Plus |
Vha16-3-RB | 633 | CG32090-RB | 219..542 | 164..487 | 375 | 74.4 | Plus |
Vha16-3-RA | 587 | CG32090-RA | 173..496 | 164..487 | 375 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11474998..11475474 | 17..493 | 2385 | 100 | Plus |
3L | 28110227 | 3L | 11473558..11473881 | 164..487 | 375 | 74.4 | Plus |
2L | 23513712 | 2L | 10736638..10736774 | 243..107 | 220 | 77.4 | Minus |
2R | 25286936 | 2R | 6627477..6627556 | 483..404 | 205 | 83.8 | Minus |
2L | 23513712 | 2L | 10736392..10736483 | 483..392 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:02:02 has no hits.
BS17344.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:41 Download gff for
BS17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:20 Download gff for
BS17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:28 Download gff for
BS17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 41..517 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:41 Download gff for
BS17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:10 Download gff for
BS17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 41..517 | 17..493 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:10 Download gff for
BS17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11474998..11475474 | 17..493 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:28 Download gff for
BS17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11468098..11468574 | 17..493 | 100 | | Plus |
BS17344.3prime Sequence
507 bp (507 high quality bases) assembled on 2007-05-15
> BS17344.3prime
ATGGTCTAGAAAGCTTCTAAAGCTTAGTGTACAAATAGATGGCCACAATG
AGGCCGTATAGAGCCAGGACCTCGGCGAAGATCAGGATCAGGACCATGCC
CACGAAAAGGCGTGGCTGTTCGGCGGTACCCCGGACTCCAGCATCGCCTG
CGATTCCAATGGCTACTCCTGCGGTGAGTCCTGGAAGTCCGACGGACAAT
CCGGCGCCCAGATGCACATAACTGTCTTCCATCGTATAATCATCGCCAAT
CGATCCGGCTATCAGGACGGATACCACCAATCCGTAGATCGCAATAATTC
CCGCCATTACGACCGGAATGATGGCCTTCATGATCATATCCGGTCGATTG
ACCGCCATCTTGGCGATTCCGACACCGGAAACTGCTGTTCCGTAAGACGC
TCCCAAGGTCGTGAATATAATCGCAACTGCAGCCCCCGTGCATCCCAAGA
AGAAGGCGTATGATGGCTCTTCATTTAAAGCGGCAGTAACCATGTCGACT
GATAACT
BS17344.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32089-PA | 477 | Vha16-2-RA | 1..477 | 493..17 | 2385 | 100 | Minus |
CG32090-PA | 477 | Vha16-3-RA | 379..428 | 118..69 | 200 | 96 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-2-RA | 595 | CG32089-RA | 41..517 | 493..17 | 2385 | 100 | Minus |
Vha16-3-RB | 633 | CG32090-RB | 219..542 | 346..23 | 380 | 75.6 | Minus |
Vha16-3-RA | 587 | CG32090-RA | 173..496 | 346..23 | 380 | 75.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11474998..11475474 | 493..17 | 2385 | 100 | Minus |
3L | 28110227 | 3L | 11473558..11473881 | 346..23 | 375 | 74.4 | Minus |
2L | 23513712 | 2L | 10736638..10736774 | 267..403 | 220 | 77.4 | Plus |
2R | 25286936 | 2R | 6627477..6627556 | 27..106 | 205 | 83.8 | Plus |
2L | 23513712 | 2L | 10736392..10736483 | 27..118 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:43:55 has no hits.
BS17344.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:32:37 Download gff for
BS17344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32089-PA | 1..477 | 17..493 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:40 Download gff for
BS17344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 31..524 | 7..505 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:34 Download gff for
BS17344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 31..524 | 7..505 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:34 Download gff for
BS17344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11474988..11475481 | 7..505 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:40 Download gff for
BS17344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11468088..11468581 | 7..505 | 98 | | Minus |
BS17344.5prime Sequence
507 bp (507 high quality bases) assembled on 2007-05-15
> BS17344.5prime
GAAGTTATCAGTCGACATGGTTACTGCCGCTTTAAATGAAGAGCCATCAT
ACGCCTTCTTCTTGGGATGCACGGGGGCTGCAGTTGCGATTATATTCACG
ACCTTGGGAGCGTCTTACGGAACAGCAGTTTCCGGTGTCGGAATCGCCAA
GATGGCGGTCAATCGACCGGATATGATCATGAAGGCCATCATTCCGGTCG
TAATGGCGGGAATTATTGCGATCTACGGATTGGTGGTATCCGTCCTGATA
GCCGGATCGATTGGCGATGATTATACGATGGAAGACAGTTATGTGCATCT
GGGCGCCGGATTGTCCGTCGGACTTCCAGGACTCACCGCAGGAGTAGCCA
TTGGAATCGCAGGCGATGCTGGAGTCCGGGGTACCGCCGAACAGCCACGC
CTTTTCGTGGGCATGGTCCTGATCCTGATCTTCGCCGAGGTCCTGGCTCT
ATACGGCCTCATTGTGGCCATCTATTTGTACACTAAGCTTTAGAAGCTTT
CTAGACC
BS17344.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:25:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32089-PA | 477 | Vha16-2-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
CG32090-PA | 477 | Vha16-3-RA | 379..428 | 392..441 | 200 | 96 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-2-RA | 595 | CG32089-RA | 41..517 | 17..493 | 2385 | 100 | Plus |
Vha16-3-RB | 633 | CG32090-RB | 219..542 | 164..487 | 380 | 75.6 | Plus |
Vha16-3-RA | 587 | CG32090-RA | 173..496 | 164..487 | 380 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11474998..11475474 | 17..493 | 2385 | 100 | Plus |
3L | 28110227 | 3L | 11473558..11473881 | 164..487 | 375 | 74.4 | Plus |
2L | 23513712 | 2L | 10736638..10736774 | 243..107 | 220 | 77.4 | Minus |
2R | 25286936 | 2R | 6627477..6627556 | 483..404 | 205 | 83.8 | Minus |
2L | 23513712 | 2L | 10736392..10736483 | 483..392 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:00:50 has no hits.
BS17344.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:25:15 Download gff for
BS17344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32089-PA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:46 Download gff for
BS17344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 31..524 | 5..503 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:57 Download gff for
BS17344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 31..524 | 5..503 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:57 Download gff for
BS17344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11474988..11475481 | 5..503 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:46 Download gff for
BS17344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11468088..11468581 | 5..503 | 98 | | Plus |
BS17344.pep Sequence
Translation from 16 to 492
> BS17344.pep
MVTAALNEEPSYAFFLGCTGAAVAIIFTTLGASYGTAVSGVGIAKMAVNR
PDMIMKAIIPVVMAGIIAIYGLVVSVLIAGSIGDDYTMEDSYVHLGAGLS
VGLPGLTAGVAIGIAGDAGVRGTAEQPRLFVGMVLILIFAEVLALYGLIV
AIYLYTKL*
BS17344.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-2-PA | 158 | CG32089-PA | 1..158 | 1..158 | 774 | 100 | Plus |
Vha16-3-PB | 158 | CG32090-PB | 5..158 | 4..157 | 582 | 76 | Plus |
Vha16-3-PA | 158 | CG32090-PA | 5..158 | 4..157 | 582 | 76 | Plus |
Vha16-1-PB | 159 | CG3161-PB | 1..159 | 1..157 | 529 | 68.6 | Plus |
Vha16-1-PA | 159 | CG3161-PA | 1..159 | 1..157 | 529 | 68.6 | Plus |