Clone BS17344 Report

Search the DGRC for BS17344

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptVha16-2-RA
Protein status:BS17344.pep: full length peptide match
Sequenced Size:509

Clone Sequence Records

BS17344.complete Sequence

509 bp assembled on 2010-02-09

GenBank Submission: KX801849

> BS17344.complete
GAAGTTATCAGTCGACATGGTTACTGCCGCTTTAAATGAAGAGCCATCAT
ACGCCTTCTTCTTGGGATGCACGGGGGCTGCAGTTGCGATTATATTCACG
ACCTTGGGAGCGTCTTACGGAACAGCAGTTTCCGGTGTCGGAATCGCCAA
GATGGCGGTCAATCGACCGGATATGATCATGAAGGCCATCATTCCGGTCG
TAATGGCGGGAATTATTGCGATCTACGGATTGGTGGTATCCGTCCTGATA
GCCGGATCGATTGGCGATGATTATACGATGGAAGACAGTTATGTGCATCT
GGGCGCCGGATTGTCCGTCGGACTTCCAGGACTCACCGCAGGAGTAGCCA
TTGGAATCGCAGGCGATGCTGGAGTCCGGGGTACCGCCGAACAGCCACGC
CTTTTCGTGGGCATGGTCCTGATCCTGATCTTCGCCGAGGTCCTGGCTCT
ATACGGCCTCATTGTGGCCATCTATTTGTACACTAAGCTTTAGAAGCTTT
CTAGACCAT

BS17344.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-2-RA 477 CG32089-PA 1..477 17..493 2385 100 Plus
Vha16-3-RB 477 CG32090-PB 151..474 164..487 375 74.4 Plus
Vha16-3-RA 477 CG32090-PA 151..474 164..487 375 74.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-2-RA 595 CG32089-RA 41..517 17..493 2385 100 Plus
Vha16-3-RB 633 CG32090-RB 219..542 164..487 375 74.4 Plus
Vha16-3-RA 587 CG32090-RA 173..496 164..487 375 74.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11474998..11475474 17..493 2385 100 Plus
3L 28110227 3L 11473558..11473881 164..487 375 74.4 Plus
2L 23513712 2L 10736638..10736774 243..107 220 77.4 Minus
2R 25286936 2R 6627477..6627556 483..404 205 83.8 Minus
2L 23513712 2L 10736392..10736483 483..392 190 80.4 Minus
Blast to na_te.dros performed on 2014-11-28 03:02:02 has no hits.

BS17344.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:41 Download gff for BS17344.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 1..477 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:20 Download gff for BS17344.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 1..477 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:28 Download gff for BS17344.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 41..517 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:41 Download gff for BS17344.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 1..477 17..493 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:10 Download gff for BS17344.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 41..517 17..493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:10 Download gff for BS17344.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11474998..11475474 17..493 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:28 Download gff for BS17344.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11468098..11468574 17..493 100   Plus

BS17344.3prime Sequence

507 bp (507 high quality bases) assembled on 2007-05-15

> BS17344.3prime
ATGGTCTAGAAAGCTTCTAAAGCTTAGTGTACAAATAGATGGCCACAATG
AGGCCGTATAGAGCCAGGACCTCGGCGAAGATCAGGATCAGGACCATGCC
CACGAAAAGGCGTGGCTGTTCGGCGGTACCCCGGACTCCAGCATCGCCTG
CGATTCCAATGGCTACTCCTGCGGTGAGTCCTGGAAGTCCGACGGACAAT
CCGGCGCCCAGATGCACATAACTGTCTTCCATCGTATAATCATCGCCAAT
CGATCCGGCTATCAGGACGGATACCACCAATCCGTAGATCGCAATAATTC
CCGCCATTACGACCGGAATGATGGCCTTCATGATCATATCCGGTCGATTG
ACCGCCATCTTGGCGATTCCGACACCGGAAACTGCTGTTCCGTAAGACGC
TCCCAAGGTCGTGAATATAATCGCAACTGCAGCCCCCGTGCATCCCAAGA
AGAAGGCGTATGATGGCTCTTCATTTAAAGCGGCAGTAACCATGTCGACT
GATAACT

BS17344.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG32089-PA 477 Vha16-2-RA 1..477 493..17 2385 100 Minus
CG32090-PA 477 Vha16-3-RA 379..428 118..69 200 96 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-2-RA 595 CG32089-RA 41..517 493..17 2385 100 Minus
Vha16-3-RB 633 CG32090-RB 219..542 346..23 380 75.6 Minus
Vha16-3-RA 587 CG32090-RA 173..496 346..23 380 75.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11474998..11475474 493..17 2385 100 Minus
3L 28110227 3L 11473558..11473881 346..23 375 74.4 Minus
2L 23513712 2L 10736638..10736774 267..403 220 77.4 Plus
2R 25286936 2R 6627477..6627556 27..106 205 83.8 Plus
2L 23513712 2L 10736392..10736483 27..118 190 80.4 Plus
Blast to na_te.dros performed on 2015-02-11 16:43:55 has no hits.

BS17344.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:32:37 Download gff for BS17344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32089-PA 1..477 17..493 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:40 Download gff for BS17344.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 31..524 7..505 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:34 Download gff for BS17344.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 31..524 7..505 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:34 Download gff for BS17344.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11474988..11475481 7..505 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:40 Download gff for BS17344.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11468088..11468581 7..505 98   Minus

BS17344.5prime Sequence

507 bp (507 high quality bases) assembled on 2007-05-15

> BS17344.5prime
GAAGTTATCAGTCGACATGGTTACTGCCGCTTTAAATGAAGAGCCATCAT
ACGCCTTCTTCTTGGGATGCACGGGGGCTGCAGTTGCGATTATATTCACG
ACCTTGGGAGCGTCTTACGGAACAGCAGTTTCCGGTGTCGGAATCGCCAA
GATGGCGGTCAATCGACCGGATATGATCATGAAGGCCATCATTCCGGTCG
TAATGGCGGGAATTATTGCGATCTACGGATTGGTGGTATCCGTCCTGATA
GCCGGATCGATTGGCGATGATTATACGATGGAAGACAGTTATGTGCATCT
GGGCGCCGGATTGTCCGTCGGACTTCCAGGACTCACCGCAGGAGTAGCCA
TTGGAATCGCAGGCGATGCTGGAGTCCGGGGTACCGCCGAACAGCCACGC
CTTTTCGTGGGCATGGTCCTGATCCTGATCTTCGCCGAGGTCCTGGCTCT
ATACGGCCTCATTGTGGCCATCTATTTGTACACTAAGCTTTAGAAGCTTT
CTAGACC

BS17344.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32089-PA 477 Vha16-2-RA 1..477 17..493 2385 100 Plus
CG32090-PA 477 Vha16-3-RA 379..428 392..441 200 96 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-2-RA 595 CG32089-RA 41..517 17..493 2385 100 Plus
Vha16-3-RB 633 CG32090-RB 219..542 164..487 380 75.6 Plus
Vha16-3-RA 587 CG32090-RA 173..496 164..487 380 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11474998..11475474 17..493 2385 100 Plus
3L 28110227 3L 11473558..11473881 164..487 375 74.4 Plus
2L 23513712 2L 10736638..10736774 243..107 220 77.4 Minus
2R 25286936 2R 6627477..6627556 483..404 205 83.8 Minus
2L 23513712 2L 10736392..10736483 483..392 190 80.4 Minus
Blast to na_te.dros performed on 2015-02-10 16:00:50 has no hits.

BS17344.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:25:15 Download gff for BS17344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32089-PA 1..477 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:46 Download gff for BS17344.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 31..524 5..503 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:57 Download gff for BS17344.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 31..524 5..503 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:57 Download gff for BS17344.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11474988..11475481 5..503 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:46 Download gff for BS17344.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11468088..11468581 5..503 98   Plus

BS17344.pep Sequence

Translation from 16 to 492

> BS17344.pep
MVTAALNEEPSYAFFLGCTGAAVAIIFTTLGASYGTAVSGVGIAKMAVNR
PDMIMKAIIPVVMAGIIAIYGLVVSVLIAGSIGDDYTMEDSYVHLGAGLS
VGLPGLTAGVAIGIAGDAGVRGTAEQPRLFVGMVLILIFAEVLALYGLIV
AIYLYTKL*

BS17344.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-2-PA 158 CG32089-PA 1..158 1..158 774 100 Plus
Vha16-3-PB 158 CG32090-PB 5..158 4..157 582 76 Plus
Vha16-3-PA 158 CG32090-PA 5..158 4..157 582 76 Plus
Vha16-1-PB 159 CG3161-PB 1..159 1..157 529 68.6 Plus
Vha16-1-PA 159 CG3161-PA 1..159 1..157 529 68.6 Plus