Clone BS17348 Report

Search the DGRC for BS17348

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG10822-RA
Protein status:BS17348.pep: full length peptide match
Sequenced Size:377

Clone Sequence Records

BS17348.complete Sequence

377 bp assembled on 2010-02-09

GenBank Submission: KX802818

> BS17348.complete
GAAGTTATCAGTCGACATGCAGGAAGCAGAGACAGATCCAAAGCGAACTA
AAAGTTACGTGGAAGAAGTATTTCGCAAAGTGCAGGAGAAACCCGGCGTG
GAGGACATATTGATCATGAATCACTCGGGTGTGCCGGTGAAAACCTCGAT
GGATCGTCAGGAGGGCTTGCAGTACGCCTGTCTATATGACAATTTGCGGG
AGAAGTGCCAGGCGTTCCTCTCCAAAATGGAGCCAGCCCAAAATTTGACT
CTACTGAGAGTTCGTACCAAGTATCACGAGGTGCTCATTACACCAGATGC
CAAGATCACCGTTTTGGTGGTTCAGAATGCCAAAGATACTTTTCTTAACA
TAAAGGGTTAGAAGCTTTCTAGACCAT

BS17348.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-RA 345 CG10822-PA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-RA 554 CG10822-RA 111..455 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19951528..19951851 38..361 1620 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:44:05 has no hits.

BS17348.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:47 Download gff for BS17348.complete
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:26 Download gff for BS17348.complete
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 23..367 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:56 Download gff for BS17348.complete
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 111..455 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:47 Download gff for BS17348.complete
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:47 Download gff for BS17348.complete
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 111..455 17..361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:47 Download gff for BS17348.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19951455..19951475 17..37 100 -> Plus
2R 19951528..19951851 38..361 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:56 Download gff for BS17348.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15838960..15838980 17..37 100 -> Plus
arm_2R 15839033..15839356 38..361 100   Plus

BS17348.3prime Sequence

375 bp (375 high quality bases) assembled on 2007-05-15

> BS17348.3prime
ATGGTCTAGAAAGCTTCTAACCCTTTATGTTAAGAAAAGTATCTTTGGCA
TTCTGAACCACCAAAACGGTGATCTTGGCATCTGGTGTAATGAGCACCTC
GTGATACTTGGTACGAACTCTCAGTAGAGTCAAATTTTGGGCTGGCTCCA
TTTTGGAGAGGAACGCCTGGCACTTCTCCCGCAAATTGTCATATAGACAG
GCGTACTGCAAGCCCTCCTGACGATCCATCGAGGTTTTCACCGGCACACC
CGAGTGATTCATGATCAATATGTCCTCCACGCCGGGTTTCTCCTGCACTT
TGCGAAATACTTCTTCCACGTAACTTTTAGTTCGCTTTGGATCTGTCTCT
GCTTCCTGCATGTCGACTGATAACT

BS17348.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-PA 345 CG10822-RA 1..345 361..17 1725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-RA 554 CG10822-RA 111..455 361..17 1725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19951528..19951851 340..17 1620 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:03:25 has no hits.

BS17348.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:22 Download gff for BS17348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10822-PA 1..345 17..361 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:34 Download gff for BS17348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 104..462 6..368 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:34:13 Download gff for BS17348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 104..462 6..368 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:34:13 Download gff for BS17348.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19951528..19951858 6..340 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:34 Download gff for BS17348.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15839033..15839363 6..340 98   Minus

BS17348.5prime Sequence

375 bp (375 high quality bases) assembled on 2007-05-15

> BS17348.5prime
GAAGTTATCAGTCGACATGCAGGAAGCAGAGACAGATCCAAAGCGAACTA
AAAGTTACGTGGAAGAAGTATTTCGCAAAGTGCAGGAGAAACCCGGCGTG
GAGGACATATTGATCATGAATCACTCGGGTGTGCCGGTGAAAACCTCGAT
GGATCGTCAGGAGGGCTTGCAGTACGCCTGTCTATATGACAATTTGCGGG
AGAAGTGCCAGGCGTTCCTCTCCAAAATGGAGCCAGCCCAAAATTTGACT
CTACTGAGAGTTCGTACCAAGTATCACGAGGTGCTCATTACACCAGATGC
CAAGATCACCGTTTTGGTGGTTCAGAATGCCAAAGATACTTTTCTTAACA
TAAAGGGTTAGAAGCTTTCTAGACC

BS17348.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-PA 345 CG10822-RA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-RA 554 CG10822-RA 111..455 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19951528..19951851 38..361 1620 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:22:50 has no hits.

BS17348.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:04 Download gff for BS17348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10822-PA 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:22:01 Download gff for BS17348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 104..462 10..372 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:34 Download gff for BS17348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 104..462 10..372 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:34 Download gff for BS17348.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19951528..19951858 38..372 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:22:01 Download gff for BS17348.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15839033..15839363 38..372 98   Plus

BS17348.pep Sequence

Translation from 16 to 360

> BS17348.pep
MQEAETDPKRTKSYVEEVFRKVQEKPGVEDILIMNHSGVPVKTSMDRQEG
LQYACLYDNLREKCQAFLSKMEPAQNLTLLRVRTKYHEVLITPDAKITVL
VVQNAKDTFLNIKG*

BS17348.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-PA 114 CG10822-PA 1..114 1..114 583 100 Plus
robls54B-PA 112 CG34192-PA 9..110 8..109 242 45.1 Plus
robls54B-PB 112 CG34192-PB 9..110 8..109 242 45.1 Plus
robl-PA 97 CG10751-PA 5..97 15..107 199 35.5 Plus
CG10834-PA 97 CG10834-PA 5..94 15..104 159 31.1 Plus