Clone Sequence Records
BS17348.complete Sequence
377 bp assembled on 2010-02-09
GenBank Submission: KX802818
> BS17348.complete
GAAGTTATCAGTCGACATGCAGGAAGCAGAGACAGATCCAAAGCGAACTA
AAAGTTACGTGGAAGAAGTATTTCGCAAAGTGCAGGAGAAACCCGGCGTG
GAGGACATATTGATCATGAATCACTCGGGTGTGCCGGTGAAAACCTCGAT
GGATCGTCAGGAGGGCTTGCAGTACGCCTGTCTATATGACAATTTGCGGG
AGAAGTGCCAGGCGTTCCTCTCCAAAATGGAGCCAGCCCAAAATTTGACT
CTACTGAGAGTTCGTACCAAGTATCACGAGGTGCTCATTACACCAGATGC
CAAGATCACCGTTTTGGTGGTTCAGAATGCCAAAGATACTTTTCTTAACA
TAAAGGGTTAGAAGCTTTCTAGACCAT
BS17348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-RA | 345 | CG10822-PA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-RA | 554 | CG10822-RA | 111..455 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19951528..19951851 | 38..361 | 1620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:44:05 has no hits.
BS17348.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:47 Download gff for
BS17348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:26 Download gff for
BS17348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 23..367 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:56 Download gff for
BS17348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 111..455 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:47 Download gff for
BS17348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:47 Download gff for
BS17348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 111..455 | 17..361 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:47 Download gff for
BS17348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19951455..19951475 | 17..37 | 100 | -> | Plus |
2R | 19951528..19951851 | 38..361 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:56 Download gff for
BS17348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15838960..15838980 | 17..37 | 100 | -> | Plus |
arm_2R | 15839033..15839356 | 38..361 | 100 | | Plus |
BS17348.3prime Sequence
375 bp (375 high quality bases) assembled on 2007-05-15
> BS17348.3prime
ATGGTCTAGAAAGCTTCTAACCCTTTATGTTAAGAAAAGTATCTTTGGCA
TTCTGAACCACCAAAACGGTGATCTTGGCATCTGGTGTAATGAGCACCTC
GTGATACTTGGTACGAACTCTCAGTAGAGTCAAATTTTGGGCTGGCTCCA
TTTTGGAGAGGAACGCCTGGCACTTCTCCCGCAAATTGTCATATAGACAG
GCGTACTGCAAGCCCTCCTGACGATCCATCGAGGTTTTCACCGGCACACC
CGAGTGATTCATGATCAATATGTCCTCCACGCCGGGTTTCTCCTGCACTT
TGCGAAATACTTCTTCCACGTAACTTTTAGTTCGCTTTGGATCTGTCTCT
GCTTCCTGCATGTCGACTGATAACT
BS17348.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-PA | 345 | CG10822-RA | 1..345 | 361..17 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-RA | 554 | CG10822-RA | 111..455 | 361..17 | 1725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19951528..19951851 | 340..17 | 1620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:03:25 has no hits.
BS17348.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:22 Download gff for
BS17348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-PA | 1..345 | 17..361 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:34 Download gff for
BS17348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 104..462 | 6..368 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:34:13 Download gff for
BS17348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 104..462 | 6..368 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:34:13 Download gff for
BS17348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19951528..19951858 | 6..340 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:34 Download gff for
BS17348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15839033..15839363 | 6..340 | 98 | | Minus |
BS17348.5prime Sequence
375 bp (375 high quality bases) assembled on 2007-05-15
> BS17348.5prime
GAAGTTATCAGTCGACATGCAGGAAGCAGAGACAGATCCAAAGCGAACTA
AAAGTTACGTGGAAGAAGTATTTCGCAAAGTGCAGGAGAAACCCGGCGTG
GAGGACATATTGATCATGAATCACTCGGGTGTGCCGGTGAAAACCTCGAT
GGATCGTCAGGAGGGCTTGCAGTACGCCTGTCTATATGACAATTTGCGGG
AGAAGTGCCAGGCGTTCCTCTCCAAAATGGAGCCAGCCCAAAATTTGACT
CTACTGAGAGTTCGTACCAAGTATCACGAGGTGCTCATTACACCAGATGC
CAAGATCACCGTTTTGGTGGTTCAGAATGCCAAAGATACTTTTCTTAACA
TAAAGGGTTAGAAGCTTTCTAGACC
BS17348.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-PA | 345 | CG10822-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-RA | 554 | CG10822-RA | 111..455 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:22:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19951528..19951851 | 38..361 | 1620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:22:50 has no hits.
BS17348.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:04 Download gff for
BS17348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-PA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:22:01 Download gff for
BS17348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 104..462 | 10..372 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:34 Download gff for
BS17348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 104..462 | 10..372 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:34 Download gff for
BS17348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19951528..19951858 | 38..372 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:22:01 Download gff for
BS17348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15839033..15839363 | 38..372 | 98 | | Plus |
BS17348.pep Sequence
Translation from 16 to 360
> BS17348.pep
MQEAETDPKRTKSYVEEVFRKVQEKPGVEDILIMNHSGVPVKTSMDRQEG
LQYACLYDNLREKCQAFLSKMEPAQNLTLLRVRTKYHEVLITPDAKITVL
VVQNAKDTFLNIKG*
BS17348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-PA | 114 | CG10822-PA | 1..114 | 1..114 | 583 | 100 | Plus |
robls54B-PA | 112 | CG34192-PA | 9..110 | 8..109 | 242 | 45.1 | Plus |
robls54B-PB | 112 | CG34192-PB | 9..110 | 8..109 | 242 | 45.1 | Plus |
robl-PA | 97 | CG10751-PA | 5..97 | 15..107 | 199 | 35.5 | Plus |
CG10834-PA | 97 | CG10834-PA | 5..94 | 15..104 | 159 | 31.1 | Plus |