Clone BS17351 Report

Search the DGRC for BS17351

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG10674-RA
Protein status:BS17351.pep: full length peptide match
Sequenced Size:359

Clone Sequence Records

BS17351.complete Sequence

359 bp assembled on 2010-02-09

GenBank Submission: KX801203

> BS17351.complete
GAAGTTATCAGTCGACATGAACATGACCGTGGATCCGCGCCGCAAGGAGA
AGATCAACCGCTACAAGGCGCCCAAGAACCAGGGCCAGAGCGGCGGCGCC
AACGAGGACATGATGCCGGATTACATGAACATTCTGGGCATGATTTTCTC
CATGTGTGGACTGATGATGAAGCTCAAGTGGTGCGCCTGGTTTGCGCTGT
ACTGCTCCTGCATTAGTTTCGCCAGTTCTCGGGCCAGCGACGATGCCAAA
CAGGTGCTCTCCTCCTTTATGTTGAGCGTCAGTGCGGTGGTGATGTCCTA
CCTCCAGAATCCCGCTGCCATGACCCCACCATGGGCTTCCTAGAAGCTTT
CTAGACCAT

BS17351.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-RA 327 CG10674-PA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-RA 478 CG10674-RA 60..386 17..343 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5135840..5136012 343..171 865 100 Minus
3L 28110227 3L 5136078..5136233 172..17 780 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:42:24 has no hits.

BS17351.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:29 Download gff for BS17351.complete
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 1..327 17..343 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:09 Download gff for BS17351.complete
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 1..327 17..343 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:33 Download gff for BS17351.complete
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 60..386 17..343 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:29 Download gff for BS17351.complete
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 1..327 17..343 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:11 Download gff for BS17351.complete
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 60..386 17..343 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:11 Download gff for BS17351.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5135840..5136010 173..343 100 <- Minus
3L 5136078..5136233 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:33 Download gff for BS17351.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5128940..5129110 173..343 100 <- Minus
arm_3L 5129178..5129333 17..172 100   Minus

BS17351.3prime Sequence

357 bp (357 high quality bases) assembled on 2007-05-15

> BS17351.3prime
ATGGTCTAGAAAGCTTCTAGGAAGCCCATGGTGGGGTCATGGCAGCGGGA
TTCTGGAGGTAGGACATCACCACCGCACTGACGCTCAACATAAAGGAGGA
GAGCACCTGTTTGGCATCGTCGCTGGCCCGAGAACTGGCGAAACTAATGC
AGGAGCAGTACAGCGCAAACCAGGCGCACCACTTGAGCTTCATCATCAGT
CCACACATGGAGAAAATCATGCCCAGAATGTTCATGTAATCCGGCATCAT
GTCCTCGTTGGCGCCGCCGCTCTGGCCCTGGTTCTTGGGCGCCTTGTAGC
GGTTGATCTTCTCCTTGCGGCGCGGATCCACGGTCATGTTCATGTCGACT
GATAACT

BS17351.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-PA 327 CG10674-RA 1..327 343..17 1635 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-RA 478 CG10674-RA 60..386 343..17 1635 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5135840..5136012 17..189 865 100 Plus
3L 28110227 3L 5136078..5136233 188..343 780 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:34:55 has no hits.

BS17351.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:33:08 Download gff for BS17351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10674-PA 1..327 17..343 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:23:32 Download gff for BS17351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 60..390 12..343 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:34 Download gff for BS17351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 60..390 12..343 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:34 Download gff for BS17351.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5135836..5136010 12..187 98 <- Plus
3L 5136078..5136233 188..343 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:23:32 Download gff for BS17351.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5128936..5129110 12..187 98 <- Plus
arm_3L 5129178..5129333 188..343 100   Plus

BS17351.5prime Sequence

357 bp (357 high quality bases) assembled on 2007-05-15

> BS17351.5prime
GAAGTTATCAGTCGACATGAACATGACCGTGGATCCGCGCCGCAAGGAGA
AGATCAACCGCTACAAGGCGCCCAAGAACCAGGGCCAGAGCGGCGGCGCC
AACGAGGACATGATGCCGGATTACATGAACATTCTGGGCATGATTTTCTC
CATGTGTGGACTGATGATGAAGCTCAAGTGGTGCGCCTGGTTTGCGCTGT
ACTGCTCCTGCATTAGTTTCGCCAGTTCTCGGGCCAGCGACGATGCCAAA
CAGGTGCTCTCCTCCTTTATGTTGAGCGTCAGTGCGGTGGTGATGTCCTA
CCTCCAGAATCCCGCTGCCATGACCCCACCATGGGCTTCCTAGAAGCTTT
CTAGACC

BS17351.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-PA 327 CG10674-RA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-RA 478 CG10674-RA 60..386 17..343 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5135840..5136012 343..171 865 100 Minus
3L 28110227 3L 5136078..5136233 172..17 780 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:50:21 has no hits.

BS17351.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:25:46 Download gff for BS17351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10674-PA 1..327 17..343 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:05 Download gff for BS17351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 60..390 17..348 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:55:00 Download gff for BS17351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 60..390 17..348 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:55:00 Download gff for BS17351.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5135836..5136010 173..348 98 <- Minus
3L 5136078..5136233 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:05 Download gff for BS17351.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5128936..5129110 173..348 98 <- Minus
arm_3L 5129178..5129333 17..172 100   Minus

BS17351.pep Sequence

Translation from 16 to 342

> BS17351.pep
MNMTVDPRRKEKINRYKAPKNQGQSGGANEDMMPDYMNILGMIFSMCGLM
MKLKWCAWFALYCSCISFASSRASDDAKQVLSSFMLSVSAVVMSYLQNPA
AMTPPWAS*

BS17351.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-PA 108 CG10674-PA 1..108 1..108 574 100 Plus