Clone Sequence Records
BS17352.complete Sequence
326 bp assembled on 2010-02-09
GenBank Submission: KX801019
> BS17352.complete
GAAGTTATCAGTCGACATGTCCGCGGAAATCGAGGATTTGCTGAAACGCT
ATCAAAACTACCCCAATGTTTCTGGCATAATTATTTTGGACCCGTTCGCT
ATACCAATCAAGACCACCATGGAGTACACCTTGACCGTGCATTACGCGGC
CTTGATCAGCACCTTAACTTATAAGGCGGCCAAAATGATTACCAATTTGG
ATGCCAGCAATGAGCTGGTGACAATACGTCTGCGCACCAAGGTTCACGAG
GTGATTGTGCTGCCCTCCGAGAACTACATCATTATTGTAGTGCAAAATCC
AGGCACCTAAAAGCTTTCTAGACCAT
BS17352.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:39:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-RA | 294 | CG10834-PA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-RA | 443 | CG10834-RA | 61..355 | 17..311 | 1475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22106950..22107244 | 311..17 | 1475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:39:52 has no hits.
BS17352.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:12 Download gff for
BS17352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:57 Download gff for
BS17352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 36..327 | 17..308 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:08 Download gff for
BS17352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 36..327 | 17..308 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:12 Download gff for
BS17352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 36..338 | 17..320 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:08 Download gff for
BS17352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 61..352 | 17..308 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:08 Download gff for
BS17352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22106953..22107244 | 17..308 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:08 Download gff for
BS17352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22106953..22107244 | 17..308 | 100 | | Minus |
BS17352.3prime Sequence
324 bp (324 high quality bases) assembled on 2007-05-15
> BS17352.3prime
ATGGTCTAGAAAGCTTTTAGGTGCCTGGATTTTGCACTACAATAATGATG
TAGTTCTCGGAGGGCAGCACAATCACCTCGTGAACCTTGGTGCGCAGACG
TATTGTCACCAGCTCATTGCTGGCATCCAAATTGGTAATCATTTTGGCCG
CCTTATAAGTTAAGGTGCTGATCAAGGCCGCGTAATGCACGGTCAAGGTG
TACTCCATGGTGGTCTTGATTGGTATAGCGAACGGGTCCAAAATAATTAT
GCCAGAAACATTGGGGTAGTTTTGATAGCGTTTCAGCAAATCCTCGATTT
CCGCGGACATGTCGACTGATAACT
BS17352.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-PA | 294 | CG10834-RA | 1..294 | 310..17 | 1470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-RA | 443 | CG10834-RA | 61..355 | 310..16 | 1475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22106950..22107244 | 16..310 | 1475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:11:44 has no hits.
BS17352.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:27 Download gff for
BS17352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-PA | 1..294 | 17..310 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:40:56 Download gff for
BS17352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 36..338 | 7..310 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:54 Download gff for
BS17352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 61..363 | 7..310 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:54 Download gff for
BS17352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22106942..22107244 | 7..310 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:40:56 Download gff for
BS17352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22106942..22107244 | 7..310 | 98 | | Plus |
BS17352.5prime Sequence
324 bp (324 high quality bases) assembled on 2007-05-15
> BS17352.5prime
GAAGTTATCAGTCGACATGTCCGCGGAAATCGAGGATTTGCTGAAACGCT
ATCAAAACTACCCCAATGTTTCTGGCATAATTATTTTGGACCCGTTCGCT
ATACCAATCAAGACCACCATGGAGTACACCTTGACCGTGCATTACGCGGC
CTTGATCAGCACCTTAACTTATAAGGCGGCCAAAATGATTACCAATTTGG
ATGCCAGCAATGAGCTGGTGACAATACGTCTGCGCACCAAGGTTCACGAG
GTGATTGTGCTGCCCTCCGAGAACTACATCATTATTGTAGTGCAAAATCC
AGGCACCTAAAAGCTTTCTAGACC
BS17352.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-PA | 294 | CG10834-RA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-RA | 443 | CG10834-RA | 61..355 | 17..311 | 1475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22106950..22107244 | 311..17 | 1475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:29:47 has no hits.
BS17352.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:09 Download gff for
BS17352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-PA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:14:31 Download gff for
BS17352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 36..338 | 17..320 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:59 Download gff for
BS17352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 61..363 | 17..320 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:59 Download gff for
BS17352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22106942..22107244 | 17..320 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:14:31 Download gff for
BS17352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22106942..22107244 | 17..320 | 98 | | Minus |
BS17352.pep Sequence
Translation from 16 to 309
> BS17352.pep
MSAEIEDLLKRYQNYPNVSGIIILDPFAIPIKTTMEYTLTVHYAALISTL
TYKAAKMITNLDASNELVTIRLRTKVHEVIVLPSENYIIIVVQNPGT*
BS17352.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-PA | 97 | CG10834-PA | 1..97 | 1..97 | 482 | 100 | Plus |
robl22E-PB | 97 | CG10838-PB | 1..95 | 1..95 | 282 | 53.7 | Plus |
robl22E-PA | 97 | CG10838-PA | 1..95 | 1..95 | 282 | 53.7 | Plus |
robl-PA | 97 | CG10751-PA | 1..95 | 1..95 | 230 | 44.2 | Plus |
CG10822-PA | 114 | CG10822-PA | 15..104 | 5..94 | 159 | 31.1 | Plus |