Clone BS17356 Report

Search the DGRC for BS17356

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:56
Vector:pDNR-Dual
Associated Gene/Transcriptpallidin-RC
Protein status:BS17356.pep: full length peptide match
Sequenced Size:395

Clone Sequence Records

BS17356.3prime Sequence

393 bp (393 high quality bases) assembled on 2007-05-15

> BS17356.3prime
ATGGTCTAGAAAGCTTCTACTGGCTGCCAATGAGCGACTCCTCGTGCTGT
AGCCTCTCGAGTTTCCGCTGGTAGTCACGCTGCTTGCAGGCCGCCACGTT
AGCGGCTCGTTTCTTTAACTCTTTGGTGCGCTGATAGACGCCCTGCATTT
CCTTCTTGATTTTTGTTAGCTTATCTTTGTATCGCTTTACATCGCTCATC
ATATCATTCAGCCTGGCCACTTCGCTGCAGTCCAGTTTATATTTCTCCTT
GGACAAATCGATGTATGTTTTGTTCTGCCTACCGATCAATTCCCTAAGCT
GGGTGCGCACATGGTTTAGTGGAGGCTCCGCTATTTGCAGGACGCCAGCG
GACAACTGTAAAGCGGCTAGACTGGCCATGTCGACTGATAACT

BS17356.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14133-PA 363 CG14133-RA 1..363 379..17 1815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Pallidin-RB 952 CG14133-RB 207..571 380..16 1825 100 Minus
Sug-RF 3349 CG7334-RF 3206..3308 16..118 500 99 Plus
Sug-RE 3343 CG7334-RE 3200..3302 16..118 500 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11690012..11690114 16..118 500 99 Plus
3L 28110227 3L 11691040..11691135 285..380 480 100 Plus
3L 28110227 3L 11690226..11690313 113..200 440 100 Plus
3L 28110227 3L 11690897..11690981 200..284 425 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:37:17 has no hits.

BS17356.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:33:03 Download gff for BS17356.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14133-PA 1..363 17..379 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:15:33 Download gff for BS17356.3prime
Subject Subject Range Query Range Percent Splice Strand
pallidin-RB 204..571 16..386 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:05 Download gff for BS17356.3prime
Subject Subject Range Query Range Percent Splice Strand
Pallidin-RB 204..571 16..386 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:05 Download gff for BS17356.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11690012..11690108 16..112 100 <- Plus
3L 11690226..11690312 113..199 100 <- Plus
3L 11690897..11690981 200..284 100 <- Plus
3L 11691040..11691138 285..386 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:15:33 Download gff for BS17356.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11683112..11683208 16..112 100 <- Plus
arm_3L 11683326..11683412 113..199 100 <- Plus
arm_3L 11683997..11684081 200..284 100 <- Plus
arm_3L 11684140..11684238 285..386 97   Plus

BS17356.5prime Sequence

393 bp (393 high quality bases) assembled on 2007-05-15

> BS17356.5prime
GAAGTTATCAGTCGACATGGCCAGTCTAGCCGCTTTACAGTTGTCCGCTG
GCGTCCTGCAAATAGCGGAGCCTCCACTAAACCATGTGCGCACCCAGCTT
AGGGAATTGATCGGTAGGCAGAACAAAACATACATCGATTTGTCCAAGGA
GAAATATAAACTGGACTGCAGCGAAGTGGCCAGGCTGAATGATATGATGA
GCGATGTAAAGCGATACAAAGATAAGCTAACAAAAATCAAGAAGGAAATG
CAGGGCGTCTATCAGCGCACCAAAGAGTTAAAGAAACGAGCCGCTAACGT
GGCGGCCTGCAAGCAGCGTGACTACCAGCGGAAACTCGAGAGGCTACAGC
ACGAGGAGTCGCTCATTGGCAGCCAGTAGAAGCTTTCTAGACC

BS17356.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14133-PA 363 CG14133-RA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Pallidin-RB 952 CG14133-RB 207..571 16..380 1825 100 Plus
Sug-RF 3349 CG7334-RF 3206..3308 380..278 500 99 Minus
Sug-RE 3343 CG7334-RE 3200..3302 380..278 500 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11690012..11690114 380..278 500 99 Minus
3L 28110227 3L 11691040..11691135 111..16 480 100 Minus
3L 28110227 3L 11690226..11690313 283..196 440 100 Minus
3L 28110227 3L 11690897..11690981 196..112 425 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:49:53 has no hits.

BS17356.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:25:42 Download gff for BS17356.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14133-PA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:03 Download gff for BS17356.5prime
Subject Subject Range Query Range Percent Splice Strand
pallidin-RB 204..571 10..380 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:52:05 Download gff for BS17356.5prime
Subject Subject Range Query Range Percent Splice Strand
Pallidin-RB 204..571 10..380 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:52:05 Download gff for BS17356.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11690897..11690981 112..196 100 <- Minus
3L 11691040..11691138 10..111 97   Minus
3L 11690012..11690108 284..380 100 <- Minus
3L 11690226..11690312 197..283 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:03 Download gff for BS17356.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11683112..11683208 284..380 100 <- Minus
arm_3L 11683326..11683412 197..283 100 <- Minus
arm_3L 11683997..11684081 112..196 100 <- Minus
arm_3L 11684140..11684238 10..111 97   Minus

BS17356.complete Sequence

395 bp assembled on 2012-04-25

GenBank Submission: KX802700

> BS17356.complete
GAAGTTATCAGTCGACATGGCCAGTCTAGCCGCTTTACAGTTGTCCGCTG
GCGTCCTGCAAATAGCGGAGCCTCCACTAAACCATGTGCGCACCCAGCTT
AGGGAATTGATCGGTAGGCAGAACAAAACATACATCGATTTGTCCAAGGA
GAAATATAAACTGGACTGCAGCGAAGTGGCCAGGCTGAATGATATGATGA
GCGATGTAAAGCGATACAAAGATAAGCTAACAAAAATCAAGAAGGAAATG
CAGGGCGTCTATCAGCGCACCAAAGAGTTAAAGAAACGAGCCGCTAACGT
GGCGGCCTGCAAGCAGCGTGACTACCAGCGGAAACTCGAGAGGCTACAGC
ACGAGGAGTCGCTCATTGGCAGCCAGTAGAAGCTTTCTAGACCAT

BS17356.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pallidin-RB 504 CG14133-PB 141..504 16..379 1820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pallidin-RB 952 CG14133-RB 207..571 16..380 1825 100 Plus
Sug-RF 3349 CG7334-RF 3206..3308 380..278 500 99 Minus
Sug-RE 3343 CG7334-RE 3200..3302 380..278 500 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11690012..11690114 380..278 500 99 Minus
3L 28110227 3L 11691040..11691135 111..16 480 100 Minus
3L 28110227 3L 11690226..11690313 283..196 440 100 Minus
3L 28110227 3L 11690897..11690981 196..112 425 100 Minus
Blast to na_te.dros performed on 2014-11-28 12:14:12 has no hits.

BS17356.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:48 Download gff for BS17356.complete
Subject Subject Range Query Range Percent Splice Strand
CG14133-RA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:02 Download gff for BS17356.complete
Subject Subject Range Query Range Percent Splice Strand
CG14133-RB 204..571 10..380 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:39 Download gff for BS17356.complete
Subject Subject Range Query Range Percent Splice Strand
pallidin-RB 208..570 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:21 Download gff for BS17356.complete
Subject Subject Range Query Range Percent Splice Strand
pallidin-RB 208..570 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:48 Download gff for BS17356.complete
Subject Subject Range Query Range Percent Splice Strand
CG14133-RA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:11 Download gff for BS17356.complete
Subject Subject Range Query Range Percent Splice Strand
Pallidin-RB 208..570 17..379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:11 Download gff for BS17356.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11690013..11690108 284..379 100 <- Minus
3L 11690226..11690312 197..283 100 <- Minus
3L 11690897..11690981 112..196 100 <- Minus
3L 11691040..11691134 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:21 Download gff for BS17356.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11683113..11683208 284..379 100 <- Minus
arm_3L 11683326..11683412 197..283 100 <- Minus
arm_3L 11683997..11684081 112..196 100 <- Minus
arm_3L 11684140..11684234 17..111 100   Minus

BS17356.pep Sequence

Translation from 16 to 378

> BS17356.pep
MASLAALQLSAGVLQIAEPPLNHVRTQLRELIGRQNKTYIDLSKEKYKLD
CSEVARLNDMMSDVKRYKDKLTKIKKEMQGVYQRTKELKKRAANVAACKQ
RDYQRKLERLQHEESLIGSQ*

BS17356.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
Pallidin-PB 167 CG14133-PB 48..167 1..120 599 100 Plus