Clone Sequence Records
BS17356.3prime Sequence
393 bp (393 high quality bases) assembled on 2007-05-15
> BS17356.3prime
ATGGTCTAGAAAGCTTCTACTGGCTGCCAATGAGCGACTCCTCGTGCTGT
AGCCTCTCGAGTTTCCGCTGGTAGTCACGCTGCTTGCAGGCCGCCACGTT
AGCGGCTCGTTTCTTTAACTCTTTGGTGCGCTGATAGACGCCCTGCATTT
CCTTCTTGATTTTTGTTAGCTTATCTTTGTATCGCTTTACATCGCTCATC
ATATCATTCAGCCTGGCCACTTCGCTGCAGTCCAGTTTATATTTCTCCTT
GGACAAATCGATGTATGTTTTGTTCTGCCTACCGATCAATTCCCTAAGCT
GGGTGCGCACATGGTTTAGTGGAGGCTCCGCTATTTGCAGGACGCCAGCG
GACAACTGTAAAGCGGCTAGACTGGCCATGTCGACTGATAACT
BS17356.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:33:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14133-PA | 363 | CG14133-RA | 1..363 | 379..17 | 1815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pallidin-RB | 952 | CG14133-RB | 207..571 | 380..16 | 1825 | 100 | Minus |
Sug-RF | 3349 | CG7334-RF | 3206..3308 | 16..118 | 500 | 99 | Plus |
Sug-RE | 3343 | CG7334-RE | 3200..3302 | 16..118 | 500 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11690012..11690114 | 16..118 | 500 | 99 | Plus |
3L | 28110227 | 3L | 11691040..11691135 | 285..380 | 480 | 100 | Plus |
3L | 28110227 | 3L | 11690226..11690313 | 113..200 | 440 | 100 | Plus |
3L | 28110227 | 3L | 11690897..11690981 | 200..284 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:37:17 has no hits.
BS17356.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:33:03 Download gff for
BS17356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14133-PA | 1..363 | 17..379 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:15:33 Download gff for
BS17356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pallidin-RB | 204..571 | 16..386 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:05 Download gff for
BS17356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pallidin-RB | 204..571 | 16..386 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:05 Download gff for
BS17356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11690012..11690108 | 16..112 | 100 | <- | Plus |
3L | 11690226..11690312 | 113..199 | 100 | <- | Plus |
3L | 11690897..11690981 | 200..284 | 100 | <- | Plus |
3L | 11691040..11691138 | 285..386 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:15:33 Download gff for
BS17356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11683112..11683208 | 16..112 | 100 | <- | Plus |
arm_3L | 11683326..11683412 | 113..199 | 100 | <- | Plus |
arm_3L | 11683997..11684081 | 200..284 | 100 | <- | Plus |
arm_3L | 11684140..11684238 | 285..386 | 97 | | Plus |
BS17356.5prime Sequence
393 bp (393 high quality bases) assembled on 2007-05-15
> BS17356.5prime
GAAGTTATCAGTCGACATGGCCAGTCTAGCCGCTTTACAGTTGTCCGCTG
GCGTCCTGCAAATAGCGGAGCCTCCACTAAACCATGTGCGCACCCAGCTT
AGGGAATTGATCGGTAGGCAGAACAAAACATACATCGATTTGTCCAAGGA
GAAATATAAACTGGACTGCAGCGAAGTGGCCAGGCTGAATGATATGATGA
GCGATGTAAAGCGATACAAAGATAAGCTAACAAAAATCAAGAAGGAAATG
CAGGGCGTCTATCAGCGCACCAAAGAGTTAAAGAAACGAGCCGCTAACGT
GGCGGCCTGCAAGCAGCGTGACTACCAGCGGAAACTCGAGAGGCTACAGC
ACGAGGAGTCGCTCATTGGCAGCCAGTAGAAGCTTTCTAGACC
BS17356.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14133-PA | 363 | CG14133-RA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pallidin-RB | 952 | CG14133-RB | 207..571 | 16..380 | 1825 | 100 | Plus |
Sug-RF | 3349 | CG7334-RF | 3206..3308 | 380..278 | 500 | 99 | Minus |
Sug-RE | 3343 | CG7334-RE | 3200..3302 | 380..278 | 500 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11690012..11690114 | 380..278 | 500 | 99 | Minus |
3L | 28110227 | 3L | 11691040..11691135 | 111..16 | 480 | 100 | Minus |
3L | 28110227 | 3L | 11690226..11690313 | 283..196 | 440 | 100 | Minus |
3L | 28110227 | 3L | 11690897..11690981 | 196..112 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:49:53 has no hits.
BS17356.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:25:42 Download gff for
BS17356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14133-PA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:03 Download gff for
BS17356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pallidin-RB | 204..571 | 10..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:52:05 Download gff for
BS17356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pallidin-RB | 204..571 | 10..380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:52:05 Download gff for
BS17356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11690897..11690981 | 112..196 | 100 | <- | Minus |
3L | 11691040..11691138 | 10..111 | 97 | | Minus |
3L | 11690012..11690108 | 284..380 | 100 | <- | Minus |
3L | 11690226..11690312 | 197..283 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:03 Download gff for
BS17356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11683112..11683208 | 284..380 | 100 | <- | Minus |
arm_3L | 11683326..11683412 | 197..283 | 100 | <- | Minus |
arm_3L | 11683997..11684081 | 112..196 | 100 | <- | Minus |
arm_3L | 11684140..11684238 | 10..111 | 97 | | Minus |
BS17356.complete Sequence
395 bp assembled on 2012-04-25
GenBank Submission: KX802700
> BS17356.complete
GAAGTTATCAGTCGACATGGCCAGTCTAGCCGCTTTACAGTTGTCCGCTG
GCGTCCTGCAAATAGCGGAGCCTCCACTAAACCATGTGCGCACCCAGCTT
AGGGAATTGATCGGTAGGCAGAACAAAACATACATCGATTTGTCCAAGGA
GAAATATAAACTGGACTGCAGCGAAGTGGCCAGGCTGAATGATATGATGA
GCGATGTAAAGCGATACAAAGATAAGCTAACAAAAATCAAGAAGGAAATG
CAGGGCGTCTATCAGCGCACCAAAGAGTTAAAGAAACGAGCCGCTAACGT
GGCGGCCTGCAAGCAGCGTGACTACCAGCGGAAACTCGAGAGGCTACAGC
ACGAGGAGTCGCTCATTGGCAGCCAGTAGAAGCTTTCTAGACCAT
BS17356.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pallidin-RB | 504 | CG14133-PB | 141..504 | 16..379 | 1820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pallidin-RB | 952 | CG14133-RB | 207..571 | 16..380 | 1825 | 100 | Plus |
Sug-RF | 3349 | CG7334-RF | 3206..3308 | 380..278 | 500 | 99 | Minus |
Sug-RE | 3343 | CG7334-RE | 3200..3302 | 380..278 | 500 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11690012..11690114 | 380..278 | 500 | 99 | Minus |
3L | 28110227 | 3L | 11691040..11691135 | 111..16 | 480 | 100 | Minus |
3L | 28110227 | 3L | 11690226..11690313 | 283..196 | 440 | 100 | Minus |
3L | 28110227 | 3L | 11690897..11690981 | 196..112 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:14:12 has no hits.
BS17356.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:48 Download gff for
BS17356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14133-RA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:02 Download gff for
BS17356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14133-RB | 204..571 | 10..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:39 Download gff for
BS17356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pallidin-RB | 208..570 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:21 Download gff for
BS17356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pallidin-RB | 208..570 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:48 Download gff for
BS17356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14133-RA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:11 Download gff for
BS17356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pallidin-RB | 208..570 | 17..379 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:11 Download gff for
BS17356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11690013..11690108 | 284..379 | 100 | <- | Minus |
3L | 11690226..11690312 | 197..283 | 100 | <- | Minus |
3L | 11690897..11690981 | 112..196 | 100 | <- | Minus |
3L | 11691040..11691134 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:21 Download gff for
BS17356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11683113..11683208 | 284..379 | 100 | <- | Minus |
arm_3L | 11683326..11683412 | 197..283 | 100 | <- | Minus |
arm_3L | 11683997..11684081 | 112..196 | 100 | <- | Minus |
arm_3L | 11684140..11684234 | 17..111 | 100 | | Minus |
BS17356.pep Sequence
Translation from 16 to 378
> BS17356.pep
MASLAALQLSAGVLQIAEPPLNHVRTQLRELIGRQNKTYIDLSKEKYKLD
CSEVARLNDMMSDVKRYKDKLTKIKKEMQGVYQRTKELKKRAANVAACKQ
RDYQRKLERLQHEESLIGSQ*
BS17356.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pallidin-PB | 167 | CG14133-PB | 48..167 | 1..120 | 599 | 100 | Plus |