Clone Sequence Records
BS17358.complete Sequence
377 bp assembled on 2010-02-09
GenBank Submission: KX804439
> BS17358.complete
GAAGTTATCAGTCGACATGAAGCTACTCTGCGTTGTTTTGGTTATTTACG
TTGTGGCTCTGACCCTCTTCGGAGTCGATGGACGTGGTGGGGGCACCACA
AATGGAGTGGAGGAACCAAAGTTCGTCGGTTTGTTCAGGCGGGCAAGGCG
CCATGTCCCCGCAATGAAAACCGCCCTTCTTCACGGCAACGAACCGCCTC
CACCTCCGAAATTCCGATCCCGTCGTGATACATTGGAGGACAAGCTCGTG
GCCAATGATGATCCTCCACCACCGCCGCAGTTCAGACAACGTCGTCAGGC
TCCACCTGGAATGCCACCACCGCCGGACGGCCTTCCACCACCACCCCAGT
TCCTTCTCTAAAAGCTTTCTAGACCAT
BS17358.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-RA | 345 | CG13428-PA | 1..345 | 17..361 | 1725 | 100 | Plus |
CG13428-RB | 270 | CG13428-PB | 127..270 | 218..361 | 720 | 100 | Plus |
CG13428-RB | 270 | CG13428-PB | 1..126 | 17..142 | 630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-RA | 482 | CG13428-RA | 48..393 | 17..362 | 1730 | 100 | Plus |
CG13428-RB | 407 | CG13428-RB | 174..318 | 218..362 | 725 | 100 | Plus |
CG13428-RB | 407 | CG13428-RB | 48..173 | 17..142 | 630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20540305..20540401 | 113..17 | 485 | 100 | Minus |
2R | 25286936 | 2R | 20539601..20539676 | 362..287 | 380 | 100 | Minus |
2R | 25286936 | 2R | 20539965..20540040 | 217..142 | 380 | 100 | Minus |
2R | 25286936 | 2R | 20539745..20539813 | 286..218 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:58:07 has no hits.
BS17358.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:04 Download gff for
BS17358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:29 Download gff for
BS17358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 48..390 | 17..359 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:36 Download gff for
BS17358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 48..390 | 17..359 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:04 Download gff for
BS17358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 34..393 | 4..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:46 Download gff for
BS17358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 48..390 | 17..359 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:46 Download gff for
BS17358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20539604..20539676 | 287..359 | 100 | <- | Minus |
2R | 20539745..20539813 | 218..286 | 100 | <- | Minus |
2R | 20539965..20540039 | 143..217 | 100 | <- | Minus |
2R | 20540221..20540250 | 113..142 | 100 | <- | Minus |
2R | 20540306..20540401 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:36 Download gff for
BS17358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16427109..16427181 | 287..359 | 100 | <- | Minus |
arm_2R | 16427250..16427318 | 218..286 | 100 | <- | Minus |
arm_2R | 16427470..16427544 | 143..217 | 100 | <- | Minus |
arm_2R | 16427726..16427755 | 113..142 | 100 | <- | Minus |
arm_2R | 16427811..16427906 | 17..112 | 100 | | Minus |
BS17358.3prime Sequence
375 bp (375 high quality bases) assembled on 2007-05-15
> BS17358.3prime
ATGGTCTAGAAAGCTTTTAGAGAAGGAACTGGGGTGGTGGTGGAAGGCCG
TCCGGCGGTGGTGGCATTCCAGGTGGAGCCTGACGACGTTGTCTGAACTG
CGGCGGTGGTGGAGGATCATCATTGGCCACGAGCTTGTCCTCCAATGTAT
CACGACGGGATCGGAATTTCGGAGGTGGAGGCGGTTCGTTGCCGTGAAGA
AGGGCGGTTTTCATTGCGGGGACATGGCGCCTTGCCCGCCTGAACAAACC
GACGAACTTTGGTTCCTCCACTCCATTTGTGGTGCCCCCACCACGTCCAT
CGACTCCGAAGAGGGTCAGAGCCACAACGTAAATAACCAAAACAACGCAG
AGTAGCTTCATGTCGACTGATAACT
BS17358.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-PA | 345 | CG13428-RA | 1..345 | 361..17 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-RA | 482 | CG13428-RA | 48..393 | 361..16 | 1730 | 100 | Minus |
CG13428-RB | 407 | CG13428-RB | 174..318 | 160..16 | 725 | 100 | Minus |
CG13428-RB | 407 | CG13428-RB | 48..173 | 361..236 | 630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20540305..20540401 | 265..361 | 485 | 100 | Plus |
2R | 25286936 | 2R | 20539601..20539676 | 16..91 | 380 | 100 | Plus |
2R | 25286936 | 2R | 20539965..20540040 | 161..236 | 380 | 100 | Plus |
2R | 25286936 | 2R | 20539745..20539813 | 92..160 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:29:47 has no hits.
BS17358.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:33 Download gff for
BS17358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-PA | 1..345 | 17..361 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:19 Download gff for
BS17358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 34..393 | 16..374 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:44 Download gff for
BS17358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 34..393 | 16..374 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:44 Download gff for
BS17358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20539601..20539676 | 16..91 | 100 | <- | Plus |
2R | 20539745..20539813 | 92..160 | 100 | <- | Plus |
2R | 20539965..20540039 | 161..235 | 100 | <- | Plus |
2R | 20540221..20540250 | 236..265 | 100 | <- | Plus |
2R | 20540306..20540395 | 266..355 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:19 Download gff for
BS17358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16427106..16427181 | 16..91 | 100 | <- | Plus |
arm_2R | 16427250..16427318 | 92..160 | 100 | <- | Plus |
arm_2R | 16427470..16427544 | 161..235 | 100 | <- | Plus |
arm_2R | 16427726..16427755 | 236..265 | 100 | <- | Plus |
arm_2R | 16427811..16427900 | 266..355 | 100 | <- | Plus |
BS17358.5prime Sequence
375 bp (375 high quality bases) assembled on 2007-05-15
> BS17358.5prime
GAAGTTATCAGTCGACATGAAGCTACTCTGCGTTGTTTTGGTTATTTACG
TTGTGGCTCTGACCCTCTTCGGAGTCGATGGACGTGGTGGGGGCACCACA
AATGGAGTGGAGGAACCAAAGTTCGTCGGTTTGTTCAGGCGGGCAAGGCG
CCATGTCCCCGCAATGAAAACCGCCCTTCTTCACGGCAACGAACCGCCTC
CACCTCCGAAATTCCGATCCCGTCGTGATACATTGGAGGACAAGCTCGTG
GCCAATGATGATCCTCCACCACCGCCGCAGTTCAGACAACGTCGTCAGGC
TCCACCTGGAATGCCACCACCGCCGGACGGCCTTCCACCACCACCCCAGT
TCCTTCTCTAAAAGCTTTCTAGACC
BS17358.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-PA | 345 | CG13428-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-RA | 482 | CG13428-RA | 48..393 | 17..362 | 1730 | 100 | Plus |
CG13428-RB | 407 | CG13428-RB | 174..318 | 218..362 | 725 | 100 | Plus |
CG13428-RB | 407 | CG13428-RB | 48..173 | 17..142 | 630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20540305..20540401 | 113..17 | 485 | 100 | Minus |
2R | 25286936 | 2R | 20539601..20539676 | 362..287 | 380 | 100 | Minus |
2R | 25286936 | 2R | 20539965..20540040 | 217..142 | 380 | 100 | Minus |
2R | 25286936 | 2R | 20539745..20539813 | 286..218 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:23:13 has no hits.
BS17358.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:14 Download gff for
BS17358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-PA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:22:05 Download gff for
BS17358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 34..393 | 4..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:40 Download gff for
BS17358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 34..393 | 4..362 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:40 Download gff for
BS17358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20539601..20539676 | 287..362 | 100 | <- | Minus |
2R | 20539745..20539813 | 218..286 | 100 | <- | Minus |
2R | 20539965..20540039 | 143..217 | 100 | <- | Minus |
2R | 20540221..20540250 | 113..142 | 100 | <- | Minus |
2R | 20540306..20540395 | 23..112 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:22:05 Download gff for
BS17358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16427106..16427181 | 287..362 | 100 | <- | Minus |
arm_2R | 16427250..16427318 | 218..286 | 100 | <- | Minus |
arm_2R | 16427470..16427544 | 143..217 | 100 | <- | Minus |
arm_2R | 16427726..16427755 | 113..142 | 100 | <- | Minus |
arm_2R | 16427811..16427900 | 23..112 | 100 | <- | Minus |
BS17358.pep Sequence
Translation from 16 to 360
> BS17358.pep
MKLLCVVLVIYVVALTLFGVDGRGGGTTNGVEEPKFVGLFRRARRHVPAM
KTALLHGNEPPPPPKFRSRRDTLEDKLVANDDPPPPPQFRQRRQAPPGMP
PPPDGLPPPPQFLL*
BS17358.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-PA | 114 | CG13428-PA | 1..114 | 1..114 | 620 | 100 | Plus |
CG13428-PB | 89 | CG13428-PB | 1..89 | 1..114 | 444 | 78.1 | Plus |