Clone BS17358 Report

Search the DGRC for BS17358

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG13428-RA
Protein status:BS17358.pep: full length peptide match
Sequenced Size:377

Clone Sequence Records

BS17358.complete Sequence

377 bp assembled on 2010-02-09

GenBank Submission: KX804439

> BS17358.complete
GAAGTTATCAGTCGACATGAAGCTACTCTGCGTTGTTTTGGTTATTTACG
TTGTGGCTCTGACCCTCTTCGGAGTCGATGGACGTGGTGGGGGCACCACA
AATGGAGTGGAGGAACCAAAGTTCGTCGGTTTGTTCAGGCGGGCAAGGCG
CCATGTCCCCGCAATGAAAACCGCCCTTCTTCACGGCAACGAACCGCCTC
CACCTCCGAAATTCCGATCCCGTCGTGATACATTGGAGGACAAGCTCGTG
GCCAATGATGATCCTCCACCACCGCCGCAGTTCAGACAACGTCGTCAGGC
TCCACCTGGAATGCCACCACCGCCGGACGGCCTTCCACCACCACCCCAGT
TCCTTCTCTAAAAGCTTTCTAGACCAT

BS17358.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-RA 345 CG13428-PA 1..345 17..361 1725 100 Plus
CG13428-RB 270 CG13428-PB 127..270 218..361 720 100 Plus
CG13428-RB 270 CG13428-PB 1..126 17..142 630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-RA 482 CG13428-RA 48..393 17..362 1730 100 Plus
CG13428-RB 407 CG13428-RB 174..318 218..362 725 100 Plus
CG13428-RB 407 CG13428-RB 48..173 17..142 630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20540305..20540401 113..17 485 100 Minus
2R 25286936 2R 20539601..20539676 362..287 380 100 Minus
2R 25286936 2R 20539965..20540040 217..142 380 100 Minus
2R 25286936 2R 20539745..20539813 286..218 345 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:58:07 has no hits.

BS17358.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:04 Download gff for BS17358.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:29 Download gff for BS17358.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 48..390 17..359 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:36 Download gff for BS17358.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 48..390 17..359 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:04 Download gff for BS17358.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 34..393 4..362 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:46 Download gff for BS17358.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 48..390 17..359 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:46 Download gff for BS17358.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20539604..20539676 287..359 100 <- Minus
2R 20539745..20539813 218..286 100 <- Minus
2R 20539965..20540039 143..217 100 <- Minus
2R 20540221..20540250 113..142 100 <- Minus
2R 20540306..20540401 17..112 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:36 Download gff for BS17358.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16427109..16427181 287..359 100 <- Minus
arm_2R 16427250..16427318 218..286 100 <- Minus
arm_2R 16427470..16427544 143..217 100 <- Minus
arm_2R 16427726..16427755 113..142 100 <- Minus
arm_2R 16427811..16427906 17..112 100   Minus

BS17358.3prime Sequence

375 bp (375 high quality bases) assembled on 2007-05-15

> BS17358.3prime
ATGGTCTAGAAAGCTTTTAGAGAAGGAACTGGGGTGGTGGTGGAAGGCCG
TCCGGCGGTGGTGGCATTCCAGGTGGAGCCTGACGACGTTGTCTGAACTG
CGGCGGTGGTGGAGGATCATCATTGGCCACGAGCTTGTCCTCCAATGTAT
CACGACGGGATCGGAATTTCGGAGGTGGAGGCGGTTCGTTGCCGTGAAGA
AGGGCGGTTTTCATTGCGGGGACATGGCGCCTTGCCCGCCTGAACAAACC
GACGAACTTTGGTTCCTCCACTCCATTTGTGGTGCCCCCACCACGTCCAT
CGACTCCGAAGAGGGTCAGAGCCACAACGTAAATAACCAAAACAACGCAG
AGTAGCTTCATGTCGACTGATAACT

BS17358.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-PA 345 CG13428-RA 1..345 361..17 1725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-RA 482 CG13428-RA 48..393 361..16 1730 100 Minus
CG13428-RB 407 CG13428-RB 174..318 160..16 725 100 Minus
CG13428-RB 407 CG13428-RB 48..173 361..236 630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20540305..20540401 265..361 485 100 Plus
2R 25286936 2R 20539601..20539676 16..91 380 100 Plus
2R 25286936 2R 20539965..20540040 161..236 380 100 Plus
2R 25286936 2R 20539745..20539813 92..160 345 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:29:47 has no hits.

BS17358.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:33 Download gff for BS17358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13428-PA 1..345 17..361 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:19 Download gff for BS17358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 34..393 16..374 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:44 Download gff for BS17358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 34..393 16..374 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:44 Download gff for BS17358.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20539601..20539676 16..91 100 <- Plus
2R 20539745..20539813 92..160 100 <- Plus
2R 20539965..20540039 161..235 100 <- Plus
2R 20540221..20540250 236..265 100 <- Plus
2R 20540306..20540395 266..355 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:19 Download gff for BS17358.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16427106..16427181 16..91 100 <- Plus
arm_2R 16427250..16427318 92..160 100 <- Plus
arm_2R 16427470..16427544 161..235 100 <- Plus
arm_2R 16427726..16427755 236..265 100 <- Plus
arm_2R 16427811..16427900 266..355 100 <- Plus

BS17358.5prime Sequence

375 bp (375 high quality bases) assembled on 2007-05-15

> BS17358.5prime
GAAGTTATCAGTCGACATGAAGCTACTCTGCGTTGTTTTGGTTATTTACG
TTGTGGCTCTGACCCTCTTCGGAGTCGATGGACGTGGTGGGGGCACCACA
AATGGAGTGGAGGAACCAAAGTTCGTCGGTTTGTTCAGGCGGGCAAGGCG
CCATGTCCCCGCAATGAAAACCGCCCTTCTTCACGGCAACGAACCGCCTC
CACCTCCGAAATTCCGATCCCGTCGTGATACATTGGAGGACAAGCTCGTG
GCCAATGATGATCCTCCACCACCGCCGCAGTTCAGACAACGTCGTCAGGC
TCCACCTGGAATGCCACCACCGCCGGACGGCCTTCCACCACCACCCCAGT
TCCTTCTCTAAAAGCTTTCTAGACC

BS17358.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-PA 345 CG13428-RA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-RA 482 CG13428-RA 48..393 17..362 1730 100 Plus
CG13428-RB 407 CG13428-RB 174..318 218..362 725 100 Plus
CG13428-RB 407 CG13428-RB 48..173 17..142 630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20540305..20540401 113..17 485 100 Minus
2R 25286936 2R 20539601..20539676 362..287 380 100 Minus
2R 25286936 2R 20539965..20540040 217..142 380 100 Minus
2R 25286936 2R 20539745..20539813 286..218 345 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:23:13 has no hits.

BS17358.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:14 Download gff for BS17358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13428-PA 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:22:05 Download gff for BS17358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 34..393 4..362 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:40 Download gff for BS17358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 34..393 4..362 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:40 Download gff for BS17358.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20539601..20539676 287..362 100 <- Minus
2R 20539745..20539813 218..286 100 <- Minus
2R 20539965..20540039 143..217 100 <- Minus
2R 20540221..20540250 113..142 100 <- Minus
2R 20540306..20540395 23..112 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:22:05 Download gff for BS17358.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16427106..16427181 287..362 100 <- Minus
arm_2R 16427250..16427318 218..286 100 <- Minus
arm_2R 16427470..16427544 143..217 100 <- Minus
arm_2R 16427726..16427755 113..142 100 <- Minus
arm_2R 16427811..16427900 23..112 100 <- Minus

BS17358.pep Sequence

Translation from 16 to 360

> BS17358.pep
MKLLCVVLVIYVVALTLFGVDGRGGGTTNGVEEPKFVGLFRRARRHVPAM
KTALLHGNEPPPPPKFRSRRDTLEDKLVANDDPPPPPQFRQRRQAPPGMP
PPPDGLPPPPQFLL*

BS17358.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-PA 114 CG13428-PA 1..114 1..114 620 100 Plus
CG13428-PB 89 CG13428-PB 1..89 1..114 444 78.1 Plus