Clone BS17359 Report

Search the DGRC for BS17359

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG14298-RA
Protein status:BS17359.pep: full length peptide match
Sequenced Size:368

Clone Sequence Records

BS17359.complete Sequence

368 bp assembled on 2010-02-09

GenBank Submission: KX806503

> BS17359.complete
GAAGTTATCAGTCGACATGAAATTGAAAATCAATCTGACGTTCCTCCGTG
CGACACTCGTCGGTCTCCTGTCCATCATCCTCCTGACACAGACCGCGCAT
ATCGAGGCCTTTGGAAGCGGAGGCAGCTCTTCTGGCAATGGGGCAGTGGT
GTCGTGCAAAGAGCTGAACAATTTCAACTGCTATGTGGGCCGCAACGAGG
GTAACTTTTGCAGCAGGAAGGATCAGACCAAGGTCGTTACACGCTGGTAC
TTCGACAAGGGCGTCTGCAAGCCCTTCAACTATAAAGGATGCAACGGCAA
TCGCAATCGCTTCTGCTCGCAGGAAAGCTGCGATGCACGCTGCGGCGATT
GAAAGCTTTCTAGACCAT

BS17359.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14298-RB 336 CG14298-PB 1..336 17..352 1680 100 Plus
CG14298-RA 336 CG14298-PA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14298-RB 875 CG14298-RB 256..593 15..352 1690 100 Plus
CG14298-RA 695 CG14298-RA 76..413 15..352 1690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18876738..18876922 168..352 925 100 Plus
3R 32079331 3R 18875783..18875935 15..167 765 100 Plus
Blast to na_te.dros performed 2014-11-28 03:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 2585..2622 290..328 102 80 Plus

BS17359.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:31 Download gff for BS17359.complete
Subject Subject Range Query Range Percent Splice Strand
CG14298-RA 1..336 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:20 Download gff for BS17359.complete
Subject Subject Range Query Range Percent Splice Strand
CG14298-RA 78..412 17..351 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:43 Download gff for BS17359.complete
Subject Subject Range Query Range Percent Splice Strand
CG14298-RA 78..412 17..351 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:31 Download gff for BS17359.complete
Subject Subject Range Query Range Percent Splice Strand
CG14298-RA 76..413 15..352 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:53 Download gff for BS17359.complete
Subject Subject Range Query Range Percent Splice Strand
CG14298-RA 78..412 17..351 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:53 Download gff for BS17359.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18875785..18875935 17..167 100 -> Plus
3R 18876738..18876921 168..351 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:43 Download gff for BS17359.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14701507..14701657 17..167 100 -> Plus
arm_3R 14702460..14702643 168..351 100   Plus

BS17359.3prime Sequence

366 bp (366 high quality bases) assembled on 2007-05-15

> BS17359.3prime
ATGGTCTAGAAAGCTTTCAATCGCCGCAGCGTGCATCGCAGCTTTCCTGC
GAGCAGAAGCGATTGCGATTGCCGTTGCATCCTTTATAGTTGAAGGGCTT
GCAGACGCCCTTGTCGAAGTACCAGCGTGTAACGACCTTGGTCTGATCCT
TCCTGCTGCAAAAGTTACCCTCGTTGCGGCCCACATAGCAGTTGAAATTG
TTCAGCTCTTTGCACGACACCACTGCCCCATTGCCAGAAGAGCTGCCTCC
GCTTCCAAAGGCCTCGATATGCGCGGTCTGTGTCAGGAGGATGATGGACA
GGAGACCGACGAGTGTCGCACGGAGGAACGTCAGATTGATTTTCAATTTC
ATGTCGACTGATAACT

BS17359.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14298-PA 336 CG14298-RA 1..336 352..17 1680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14298-RB 875 CG14298-RB 256..593 354..17 1690 100 Minus
CG14298-RA 695 CG14298-RA 76..413 354..17 1690 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18876738..18876922 201..17 925 100 Minus
3R 32079331 3R 18875783..18875935 354..202 765 100 Minus
Blast to na_te.dros performed 2015-02-10 17:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 2585..2622 79..41 102 80 Minus

BS17359.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:41 Download gff for BS17359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14298-PA 1..336 17..352 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:15:20 Download gff for BS17359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14298-RA 76..413 17..354 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:56 Download gff for BS17359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14298-RA 76..413 17..354 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:56 Download gff for BS17359.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18875783..18875935 202..354 100 -> Minus
3R 18876738..18876922 17..201 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:15:20 Download gff for BS17359.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14702460..14702644 17..201 100   Minus
arm_3R 14701505..14701657 202..354 100 -> Minus

BS17359.5prime Sequence

367 bp (367 high quality bases) assembled on 2007-05-15

> BS17359.5prime
AGAAGTTATCCTTTAACATGAAATTGAAAATCAATCTGACGTTCCTCCGT
GCGACACTCGTCGGTCTCCTGTCCATCATCCTCCTCACACAGACCGCGCA
TATCGAGGCCTTTGGAAGCGGAGGCAGCTCTTCTGGCAATGGGGCAGTGG
TGTCGTGCAAAGAGCTGAACAATTTCAACTGCTATGTGGGCCGCAACGAG
GGTAACTTTTGCAGCAGGAAGGATCAGACCAAGGTCGTTACACGCTGGTA
CTTCGACAAGGGCGTCTGCAAGCCCTTCAACTATAAAGGATGCAACGGCA
ATCGCAATCGCTTCTGCTCGCAGGAAAGCTGCGATGCACGCTGCGGCGAT
TGAAAGCTTTCTAGACC

BS17359.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14298-PA 336 CG14298-RA 1..336 18..353 1655 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14298-RB 875 CG14298-RB 255..593 15..353 1680 99.7 Plus
CG14298-RA 695 CG14298-RA 75..413 15..353 1680 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18876738..18876922 169..353 925 100 Plus
3R 32079331 3R 18875782..18875935 15..168 755 99.4 Plus
Blast to na_te.dros performed 2015-02-11 16:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 2585..2622 291..329 102 80 Plus

BS17359.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:23 Download gff for BS17359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14298-PA 1..336 18..353 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:00 Download gff for BS17359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14298-RA 75..413 15..353 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:04 Download gff for BS17359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14298-RA 75..413 15..353 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:04 Download gff for BS17359.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18875782..18875935 15..168 99 -> Plus
3R 18876738..18876922 169..353 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:00 Download gff for BS17359.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14701504..14701657 15..168 99 -> Plus
arm_3R 14702460..14702644 169..353 100   Plus

BS17359.pep Sequence

Translation from 16 to 351

> BS17359.pep
MKLKINLTFLRATLVGLLSIILLTQTAHIEAFGSGGSSSGNGAVVSCKEL
NNFNCYVGRNEGNFCSRKDQTKVVTRWYFDKGVCKPFNYKGCNGNRNRFC
SQESCDARCGD*

BS17359.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14298-PB 111 CG14298-PB 1..111 1..111 604 100 Plus
CG14298-PA 111 CG14298-PA 1..111 1..111 604 100 Plus