Clone Sequence Records
BS17359.complete Sequence
368 bp assembled on 2010-02-09
GenBank Submission: KX806503
> BS17359.complete
GAAGTTATCAGTCGACATGAAATTGAAAATCAATCTGACGTTCCTCCGTG
CGACACTCGTCGGTCTCCTGTCCATCATCCTCCTGACACAGACCGCGCAT
ATCGAGGCCTTTGGAAGCGGAGGCAGCTCTTCTGGCAATGGGGCAGTGGT
GTCGTGCAAAGAGCTGAACAATTTCAACTGCTATGTGGGCCGCAACGAGG
GTAACTTTTGCAGCAGGAAGGATCAGACCAAGGTCGTTACACGCTGGTAC
TTCGACAAGGGCGTCTGCAAGCCCTTCAACTATAAAGGATGCAACGGCAA
TCGCAATCGCTTCTGCTCGCAGGAAAGCTGCGATGCACGCTGCGGCGATT
GAAAGCTTTCTAGACCAT
BS17359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14298-RB | 336 | CG14298-PB | 1..336 | 17..352 | 1680 | 100 | Plus |
CG14298-RA | 336 | CG14298-PA | 1..336 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14298-RB | 875 | CG14298-RB | 256..593 | 15..352 | 1690 | 100 | Plus |
CG14298-RA | 695 | CG14298-RA | 76..413 | 15..352 | 1690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18876738..18876922 | 168..352 | 925 | 100 | Plus |
3R | 32079331 | 3R | 18875783..18875935 | 15..167 | 765 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:11:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 2585..2622 | 290..328 | 102 | 80 | Plus |
BS17359.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:31 Download gff for
BS17359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14298-RA | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:20 Download gff for
BS17359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14298-RA | 78..412 | 17..351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:43 Download gff for
BS17359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14298-RA | 78..412 | 17..351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:31 Download gff for
BS17359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14298-RA | 76..413 | 15..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:53 Download gff for
BS17359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14298-RA | 78..412 | 17..351 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:53 Download gff for
BS17359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18875785..18875935 | 17..167 | 100 | -> | Plus |
3R | 18876738..18876921 | 168..351 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:43 Download gff for
BS17359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14701507..14701657 | 17..167 | 100 | -> | Plus |
arm_3R | 14702460..14702643 | 168..351 | 100 | | Plus |
BS17359.3prime Sequence
366 bp (366 high quality bases) assembled on 2007-05-15
> BS17359.3prime
ATGGTCTAGAAAGCTTTCAATCGCCGCAGCGTGCATCGCAGCTTTCCTGC
GAGCAGAAGCGATTGCGATTGCCGTTGCATCCTTTATAGTTGAAGGGCTT
GCAGACGCCCTTGTCGAAGTACCAGCGTGTAACGACCTTGGTCTGATCCT
TCCTGCTGCAAAAGTTACCCTCGTTGCGGCCCACATAGCAGTTGAAATTG
TTCAGCTCTTTGCACGACACCACTGCCCCATTGCCAGAAGAGCTGCCTCC
GCTTCCAAAGGCCTCGATATGCGCGGTCTGTGTCAGGAGGATGATGGACA
GGAGACCGACGAGTGTCGCACGGAGGAACGTCAGATTGATTTTCAATTTC
ATGTCGACTGATAACT
BS17359.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14298-PA | 336 | CG14298-RA | 1..336 | 352..17 | 1680 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14298-RB | 875 | CG14298-RB | 256..593 | 354..17 | 1690 | 100 | Minus |
CG14298-RA | 695 | CG14298-RA | 76..413 | 354..17 | 1690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18876738..18876922 | 201..17 | 925 | 100 | Minus |
3R | 32079331 | 3R | 18875783..18875935 | 354..202 | 765 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 17:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 2585..2622 | 79..41 | 102 | 80 | Minus |
BS17359.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:41 Download gff for
BS17359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14298-PA | 1..336 | 17..352 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:15:20 Download gff for
BS17359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14298-RA | 76..413 | 17..354 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:56 Download gff for
BS17359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14298-RA | 76..413 | 17..354 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:56 Download gff for
BS17359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18875783..18875935 | 202..354 | 100 | -> | Minus |
3R | 18876738..18876922 | 17..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:15:20 Download gff for
BS17359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14702460..14702644 | 17..201 | 100 | | Minus |
arm_3R | 14701505..14701657 | 202..354 | 100 | -> | Minus |
BS17359.5prime Sequence
367 bp (367 high quality bases) assembled on 2007-05-15
> BS17359.5prime
AGAAGTTATCCTTTAACATGAAATTGAAAATCAATCTGACGTTCCTCCGT
GCGACACTCGTCGGTCTCCTGTCCATCATCCTCCTCACACAGACCGCGCA
TATCGAGGCCTTTGGAAGCGGAGGCAGCTCTTCTGGCAATGGGGCAGTGG
TGTCGTGCAAAGAGCTGAACAATTTCAACTGCTATGTGGGCCGCAACGAG
GGTAACTTTTGCAGCAGGAAGGATCAGACCAAGGTCGTTACACGCTGGTA
CTTCGACAAGGGCGTCTGCAAGCCCTTCAACTATAAAGGATGCAACGGCA
ATCGCAATCGCTTCTGCTCGCAGGAAAGCTGCGATGCACGCTGCGGCGAT
TGAAAGCTTTCTAGACC
BS17359.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14298-PA | 336 | CG14298-RA | 1..336 | 18..353 | 1655 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14298-RB | 875 | CG14298-RB | 255..593 | 15..353 | 1680 | 99.7 | Plus |
CG14298-RA | 695 | CG14298-RA | 75..413 | 15..353 | 1680 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18876738..18876922 | 169..353 | 925 | 100 | Plus |
3R | 32079331 | 3R | 18875782..18875935 | 15..168 | 755 | 99.4 | Plus |
Blast to na_te.dros performed 2015-02-11 16:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 2585..2622 | 291..329 | 102 | 80 | Plus |
BS17359.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:23 Download gff for
BS17359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14298-PA | 1..336 | 18..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:00 Download gff for
BS17359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14298-RA | 75..413 | 15..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:04 Download gff for
BS17359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14298-RA | 75..413 | 15..353 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:04 Download gff for
BS17359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18875782..18875935 | 15..168 | 99 | -> | Plus |
3R | 18876738..18876922 | 169..353 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:00 Download gff for
BS17359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14701504..14701657 | 15..168 | 99 | -> | Plus |
arm_3R | 14702460..14702644 | 169..353 | 100 | | Plus |
BS17359.pep Sequence
Translation from 16 to 351
> BS17359.pep
MKLKINLTFLRATLVGLLSIILLTQTAHIEAFGSGGSSSGNGAVVSCKEL
NNFNCYVGRNEGNFCSRKDQTKVVTRWYFDKGVCKPFNYKGCNGNRNRFC
SQESCDARCGD*
BS17359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14298-PB | 111 | CG14298-PB | 1..111 | 1..111 | 604 | 100 | Plus |
CG14298-PA | 111 | CG14298-PA | 1..111 | 1..111 | 604 | 100 | Plus |