Clone BS17360 Report

Search the DGRC for BS17360

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG14312-RA
Protein status:BS17360.pep: full length peptide match
Sequenced Size:359

Clone Sequence Records

BS17360.complete Sequence

359 bp assembled on 2010-02-09

GenBank Submission: KX804462

> BS17360.complete
GAAGTTATCAGTCGACATGTCTACCTATCCCAGTGCTTCCGCATCCCAGT
CGACAGGAACCTCTGACCTGGACACCGAGTCCGTGGAAGTTCTGCGGGAG
CGGCTGAGCACCATGAAGCGGCTGATGGCCGAGCGGACGTCCCAGCAGCA
AAACAACCCGGCGACCACGGAGGAGATATTCTCCACCAAGCGCCACCGCT
CGGCGGGCATCATCGATGGAAACTTCCTGAGCATCGCGTTCGGCGGAGCT
CTGCTGGTGATCATCACGGTTTCGGTGTACGCCTTCTACAGTCTCTACCA
TGCCATACTCAAGAAGTTCCCTTCGCGCCACGAGGAGCTGTAAAAGCTTT
CTAGACCAT

BS17360.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-RA 327 CG14312-PA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-RA 494 CG14312-RA 75..402 17..344 1640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18283070..18283359 344..55 1450 100 Minus
3R 32079331 3R 18283414..18283454 57..17 205 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:11:41 has no hits.

BS17360.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:32 Download gff for BS17360.complete
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 1..327 17..343 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:22 Download gff for BS17360.complete
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 1..325 17..341 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:47 Download gff for BS17360.complete
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 80..404 17..341 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:33 Download gff for BS17360.complete
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 1..327 17..343 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:57 Download gff for BS17360.complete
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 75..399 17..341 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:57 Download gff for BS17360.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18283073..18283357 57..341 100 <- Minus
3R 18283415..18283454 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:47 Download gff for BS17360.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14108795..14109079 57..341 100 <- Minus
arm_3R 14109137..14109176 17..56 100   Minus

BS17360.3prime Sequence

357 bp (357 high quality bases) assembled on 2007-05-15

> BS17360.3prime
ATGGTCTAGAAAGCTTTTACAGCTCCTCGTGGCGCGAAGGGAACTTCTTG
AGTATGGCATGGTAGAGACTGTAGAAGGCGTACACCGAAACCGTGATGAT
CACCAGCAGAGCTCCGCCGAACGCGATGCTCAGGAAGTTTCCATCGATGA
TGCCCGCCGAGCGGTGGCGCTTGGTGGAGAATATCTCCTCCGTGGTCGCC
GGGTTGTTTTGCTGCTGGGACGTCCGCTCGGCCATCAGCCGCTTCATGGT
GCTCAGCCGCTCCCGCAGAACTTCCACGGACTCGGTGTCCAGGTCAGAGG
TTCCTGTCGACTGGGATGCGGAAGCACTGGGATAGGTAGACATGTCGACT
GATAACT

BS17360.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-PA 327 CG14312-RA 1..327 343..17 1635 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-RA 494 CG14312-RA 75..402 343..16 1640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18283070..18283359 16..305 1450 100 Plus
3R 32079331 3R 18283414..18283454 303..343 205 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:24:13 has no hits.

BS17360.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:36:50 Download gff for BS17360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14312-PA 1..327 17..343 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:59:45 Download gff for BS17360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 80..407 16..343 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:03:09 Download gff for BS17360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 75..402 16..343 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:09 Download gff for BS17360.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18283070..18283357 16..303 100 <- Plus
3R 18283415..18283454 304..343 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:59:45 Download gff for BS17360.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14108792..14109079 16..303 100 <- Plus
arm_3R 14109137..14109176 304..343 100   Plus

BS17360.5prime Sequence

357 bp (357 high quality bases) assembled on 2007-05-15

> BS17360.5prime
GAAGTTATCAGTCGACATGTCTACCTATCCCAGTGCTTCCGCATCCCAGT
CGACAGGAACCTCTGACCTGGACACCGAGTCCGTGGAAGTTCTGCGGGAG
CGGCTGAGCACCATGAAGCGGCTGATGGCCGAGCGGACGTCCCAGCAGCA
AAACAACCCGGCGACCACGGAGGAGATATTCTCCACCAAGCGCCACCGCT
CGGCGGGCATCATCGATGGAAACTTCCTGAGCATCGCGTTCGGCGGAGCT
CTGCTGGTGATCATCACGGTTTCGGTGTACGCCTTCTACAGTCTCTACCA
TGCCATACTCAAGAAGTTCCCTTCGCGCCACGAGGAGCTGTAAAAGCTTT
CTAGACC

BS17360.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-PA 327 CG14312-RA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-RA 494 CG14312-RA 75..402 17..344 1640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18283070..18283359 344..55 1450 100 Minus
3R 32079331 3R 18283414..18283454 57..17 205 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:08:23 has no hits.

BS17360.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:34 Download gff for BS17360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14312-PA 1..327 17..343 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:50:15 Download gff for BS17360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 80..407 17..344 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:19 Download gff for BS17360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 75..402 17..344 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:19 Download gff for BS17360.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18283070..18283357 57..344 100 <- Minus
3R 18283415..18283454 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:50:15 Download gff for BS17360.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14108792..14109079 57..344 100 <- Minus
arm_3R 14109137..14109176 17..56 100   Minus

BS17360.pep Sequence

Translation from 16 to 342

> BS17360.pep
MSTYPSASASQSTGTSDLDTESVEVLRERLSTMKRLMAERTSQQQNNPAT
TEEIFSTKRHRSAGIIDGNFLSIAFGGALLVIITVSVYAFYSLYHAILKK
FPSRHEEL*

BS17360.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-PA 108 CG14312-PA 1..108 1..108 533 100 Plus