Clone Sequence Records
BS17368.complete Sequence
368 bp assembled on 2010-02-09
GenBank Submission: KX801851
> BS17368.complete
GAAGTTATCAGTCGACATGTCGAAATATGTGGCTAGAGTGGGCCCAGCGG
TTTTCTCCAAGTTGGGAAAGTGGGCCTACAACATGTCTGGATTCAACCAA
TACGGCCTGTATCGCGATGACTGTCTGTACGAGAATGAGGATGTGGCAGA
AGCAGTGCGTCGTCTGCCCCGCAAACTGTACGATGAACGCAACTATCGCA
TTCTTCGAGCACTGCACCTTTCCATGACCAAGACGATCCTGCCCAAGGAG
CAGTGGACCAAGTACGAGGAGGACATCAAGTACTTGGAGCCCTATCTTAA
CGAAGTGCAAAAGGAGCGCGAAGAGCGTGAGGAATGGAGCAAAACTCATT
GAAAGCTTTCTAGACCAT
BS17368.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-RA | 336 | CG17856-PA | 1..336 | 17..352 | 1680 | 100 | Plus |
CG3560-RA | 336 | CG3560-PA | 1..321 | 17..337 | 645 | 80.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-RA | 503 | CG17856-RA | 86..422 | 16..352 | 1685 | 100 | Plus |
CG3560-RA | 523 | CG3560-RA | 122..443 | 16..337 | 650 | 80.1 | Plus |
CG32576-RA | 1709 | CG32576-RA | 754..984 | 337..107 | 510 | 81.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28294133..28294469 | 16..352 | 1685 | 100 | Plus |
X | 23542271 | X | 16286678..16286908 | 107..337 | 510 | 81.4 | Plus |
Blast to na_te.dros performed 2014-11-28 04:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 4959..5027 | 319..249 | 106 | 66.7 | Minus |
BS17368.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:04 Download gff for
BS17368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:56 Download gff for
BS17368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 1..335 | 17..351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:05 Download gff for
BS17368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 87..421 | 17..351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:04 Download gff for
BS17368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:04 Download gff for
BS17368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 87..421 | 17..351 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:04 Download gff for
BS17368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28294134..28294468 | 17..351 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:05 Download gff for
BS17368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24119856..24120190 | 17..351 | 100 | | Plus |
BS17368.3prime Sequence
366 bp (366 high quality bases) assembled on 2007-05-15
> BS17368.3prime
ATGGTCTAGAAAGCTTTCAATGAGTTTTGCTCCATTCCTCACGCTCTTCG
CGCTCCTTTTGCACTTCGTTAAGATAGGGCTCCAAGTACTTGATGTCCTC
CTCGTACTTGGTCCACTGCTCCTTGGGCAGGATCGTCTTGGTCATGGAAA
GGTGCAGTGCTCGAAGAATGCGATAGTTGCGTTCATCGTACAGTTTGCGG
GGCAGACGACGCACTGCTTCTGCCACATCCTCATTCTCGTACAGACAGTC
ATCGCGATACAGGCCGTATTGGTTGAATCCAGACATGTTGTAGGCCCACT
TTCCCAACTTGGAGAAAACCGCTGGGCCCACTCTAGCCACATATTTCGAC
ATGTCGACTGATAACT
BS17368.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-PA | 336 | CG17856-RA | 1..336 | 352..17 | 1680 | 100 | Minus |
CG3560-PA | 336 | CG3560-RA | 205..266 | 148..87 | 235 | 95.1 | Minus |
CG3560-PA | 336 | CG3560-RA | 73..129 | 280..224 | 160 | 91.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:52:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-RA | 503 | CG17856-RA | 86..422 | 353..17 | 1685 | 100 | Minus |
CG3560-RA | 523 | CG3560-RA | 122..443 | 353..32 | 650 | 80.1 | Minus |
CG32576-RA | 1709 | CG32576-RA | 754..984 | 32..262 | 510 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28294133..28294469 | 353..17 | 1685 | 100 | Minus |
X | 23542271 | X | 16286678..16286908 | 262..32 | 510 | 81.4 | Minus |
Blast to na_te.dros performed 2015-02-11 02:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 4959..5027 | 50..120 | 106 | 66.7 | Plus |
BS17368.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:33:33 Download gff for
BS17368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-PA | 1..336 | 17..352 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:18 Download gff for
BS17368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 86..422 | 17..353 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:20:10 Download gff for
BS17368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 86..422 | 17..353 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:20:10 Download gff for
BS17368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28294133..28294469 | 17..353 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:18 Download gff for
BS17368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24119855..24120191 | 17..353 | 100 | | Minus |
BS17368.5prime Sequence
366 bp (366 high quality bases) assembled on 2007-05-15
> BS17368.5prime
GAAGTTATCAGTCGACATGTCGAAATATGTGGCTAGAGTGGGCCCAGCGG
TTTTCTCCAAGTTGGGAAAGTGGGCCTACAACATGTCTGGATTCAACCAA
TACGGCCTGTATCGCGATGACTGTCTGTACGAGAATGAGGATGTGGCAGA
AGCAGTGCGTCGTCTGCCCCGCAAACTGTACGATGAACGCAACTATCGCA
TTCTTCGAGCACTGCACCTTTCCATGACCAAGACGATCCTGCCCAAGGAG
CAGTGGACCAAGTACGAGGAGGACATCAAGTACTTGGAGCCCTATCTTAA
CGAAGTGCAAAAGGAGCGCGAAGAGCGTGAGGAATGGAGCAAAACTCATT
GAAAGCTTTCTAGACC
BS17368.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-PA | 336 | CG17856-RA | 1..336 | 17..352 | 1680 | 100 | Plus |
CG3560-PA | 336 | CG3560-RA | 205..266 | 221..282 | 235 | 95.1 | Plus |
CG3560-PA | 336 | CG3560-RA | 73..129 | 89..145 | 160 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-RA | 503 | CG17856-RA | 86..422 | 16..352 | 1685 | 100 | Plus |
CG3560-RA | 523 | CG3560-RA | 122..443 | 16..337 | 650 | 80.1 | Plus |
CG32576-RA | 1709 | CG32576-RA | 754..984 | 337..107 | 510 | 81.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28294133..28294469 | 16..352 | 1685 | 100 | Plus |
X | 23542271 | X | 16286678..16286908 | 107..337 | 510 | 81.4 | Plus |
Blast to na_te.dros performed 2015-02-13 15:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 4959..5027 | 319..249 | 106 | 66.7 | Minus |
BS17368.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:08 Download gff for
BS17368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-PA | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:50:45 Download gff for
BS17368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 86..422 | 16..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:01:36 Download gff for
BS17368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 86..422 | 16..352 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:01:36 Download gff for
BS17368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28294133..28294469 | 16..352 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:50:45 Download gff for
BS17368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24119855..24120191 | 16..352 | 100 | | Plus |
BS17368.pep Sequence
Translation from 16 to 351
> BS17368.pep
MSKYVARVGPAVFSKLGKWAYNMSGFNQYGLYRDDCLYENEDVAEAVRRL
PRKLYDERNYRILRALHLSMTKTILPKEQWTKYEEDIKYLEPYLNEVQKE
REEREEWSKTH*
BS17368.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-PA | 111 | CG17856-PA | 1..111 | 1..111 | 596 | 100 | Plus |
CG3560-PA | 111 | CG3560-PA | 1..111 | 1..111 | 528 | 85.6 | Plus |