Clone Sequence Records
BS17371.complete Sequence
320 bp assembled on 2010-02-09
GenBank Submission: KX802160
> BS17371.complete
GAAGTTATCAGTCGACATGTCCGGTCTGGAGTCGTATATCAATCACACAG
TCTCCATCATTACGGCAGACGGACGGAACTTCATCGGGACACTCAAGGGA
TTCGACCAGACCATCAATATCATCATAGACGAGTGCCATGAGCGCGTCTT
CTCTACCACCTCCGGCATCGAGCAAATCGTGCTGGGACTGCACATCATCC
GGGGGGACAACATCGCGGTGATCGGACTGATAGACGAGACCATCGACTCC
CGCCTGGATTTGGCCAACATTAGGGGCGAGCCGCTGGGTCCCGTGGTGCA
CTAGAAGCTTTCTAGACCAT
BS17371.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-RA | 288 | CG2021-PA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-RA | 402 | CG2021-RA | 82..369 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1777043..1777330 | 304..17 | 1440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:38:59 has no hits.
BS17371.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:51 Download gff for
BS17371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 1..288 | 17..304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:49 Download gff for
BS17371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 34..321 | 17..304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:53 Download gff for
BS17371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 82..369 | 17..304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:51 Download gff for
BS17371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 34..321 | 17..304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:47 Download gff for
BS17371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 82..369 | 17..304 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:47 Download gff for
BS17371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1777043..1777330 | 17..304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:53 Download gff for
BS17371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1777043..1777330 | 17..304 | 100 | | Minus |
BS17371.3prime Sequence
318 bp (318 high quality bases) assembled on 2007-05-15
> BS17371.3prime
ATGGTCTAGAAAGCTTCTAGTGCACCACGGGACCCAGCGGCTCGCCCCTA
ATGTTGGCCAAATCCAGGCGGGAGTCGATGGTCTCGTCTATCAGTCCGAT
CACCGCGATGTTGTCCCCCCGGATGATGTGCAGTCCCAGCACGATTTGCT
CGATGCCGGAGGTGGTAGAGAAGACGCGCTCATGGCACTCGTCTATGATG
ATATTGATGGTCTGGTCGAATCCCTTGAGTGTCCCGATGAAGTTCCGTCC
GTCTGCCGTAATGATGGAGACTGTGTGATTGATATACGACTCCAGACCGG
ACATGTCGACTGATAACT
BS17371.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-PA | 288 | CG2021-RA | 1..288 | 304..17 | 1440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-RA | 402 | CG2021-RA | 82..369 | 304..17 | 1440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1777043..1777330 | 17..304 | 1440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:52:06 has no hits.
BS17371.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:37:08 Download gff for
BS17371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-PA | 1..288 | 17..304 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:36 Download gff for
BS17371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 82..369 | 17..304 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:28 Download gff for
BS17371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 82..369 | 17..304 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:28 Download gff for
BS17371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1777043..1777330 | 17..304 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:36 Download gff for
BS17371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1777043..1777330 | 17..304 | 100 | | Plus |
BS17371.5prime Sequence
318 bp (318 high quality bases) assembled on 2007-05-15
> BS17371.5prime
GAAGTTATCAGTCGACATGTCCGGTCTGGAGTCGTATATCAATCACACAG
TCTCCATCATTACGGCAGACGGACGGAACTTCATCGGGACACTCAAGGGA
TTCGACCAGACCATCAATATCATCATAGACGAGTGCCATGAGCGCGTCTT
CTCTACCACCTCCGGCATCGAGCAAATCGTGCTGGGACTGCACATCATCC
GGGGGGACAACATCGCGGTGATCGGACTGATAGACGAGACCATCGACTCC
CGCCTGGATTTGGCCAACATTAGGGGCGAGCCGCTGGGTCCCGTGGTGCA
CTAGAAGCTTTCTAGACC
BS17371.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-PA | 288 | CG2021-RA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-RA | 402 | CG2021-RA | 82..369 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1777043..1777330 | 304..17 | 1440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:58:28 has no hits.
BS17371.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:29:53 Download gff for
BS17371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-PA | 1..288 | 17..304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:12 Download gff for
BS17371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 82..369 | 17..304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:47 Download gff for
BS17371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 82..369 | 17..304 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:47 Download gff for
BS17371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1777043..1777330 | 17..304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:12 Download gff for
BS17371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1777043..1777330 | 17..304 | 100 | | Minus |
BS17371.pep Sequence
Translation from 16 to 303
> BS17371.pep
MSGLESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSG
IEQIVLGLHIIRGDNIAVIGLIDETIDSRLDLANIRGEPLGPVVH*
BS17371.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-PA | 95 | CG2021-PA | 1..95 | 1..95 | 482 | 100 | Plus |
