Clone Sequence Records
BS17372.complete Sequence
317 bp assembled on 2010-02-09
GenBank Submission: KX805895
> BS17372.complete
GAAGTTATCAGTCGACATGCCGATCTTTGATATCCGGCTTATGGGCAATA
TGCCCGCCAATACCGCTGGTCTGTGGAAGCGTGTCACCTTCCTGCTGGCC
CTACCGGCCATCGTCCTGTGCGCCGCAAACGCCTTCACCGGACACAAGCA
CGTGGAGCGGGAGCCGTTCGCCAAGTACGAGTACCTGAGGCGGCGGACCA
AACGATTCCCATGGGGAGATGGCAATCGCAGTTTGTTTCACAATGCCGAG
GTGAATGCCCTGCCCGAGGGCTACGAGGATGAGGTGGCTGAGGAGGATTA
AAAGCTTTCTAGACCAT
BS17372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30093-RA | 285 | CG30093-PA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30093-RA | 540 | CG30093-RA | 85..375 | 15..305 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15944112..15944402 | 15..305 | 1455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:39:31 has no hits.
BS17372.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:56 Download gff for
BS17372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30093-RA | 1..285 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:52 Download gff for
BS17372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30093-RA | 72..354 | 17..299 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:00 Download gff for
BS17372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30093-RA | 87..369 | 17..299 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:56 Download gff for
BS17372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30093-RA | 65..365 | 9..311 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:59 Download gff for
BS17372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30093-RA | 87..369 | 17..299 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:59 Download gff for
BS17372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15944114..15944396 | 17..299 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:00 Download gff for
BS17372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11831619..11831901 | 17..299 | 100 | | Plus |
BS17372.3prime Sequence
315 bp (315 high quality bases) assembled on 2007-05-15
> BS17372.3prime
ATGGTCTAGAAAGCTTTTAATCCTCCTCAGCCACCTCATCCTCGTAGCCC
TCGGGCAGGGCATTCACCTCGGCATTGTGAAACAAACTGCGATTGCCATC
TCCCCATGGGAATCGTTTGGTCCGCCGCCTCAGGTACTCGTACTTGGCGA
ACGGCTCCCGCTCCACGTGCTTGTGTCCGGTGAAGGCGTTTGCGGCGCAC
AGGACGATGGCCGGTAGGGCCAGCAGGAAGGTGACACGCTTCCACAGACC
AGCGGTATTGGCGGGCATATTGCCCATAAGCCGGATATCAAAGATCGGCA
TGTCGACTGATAACT
BS17372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30093-PA | 285 | CG30093-RA | 1..285 | 301..17 | 1425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30093-RA | 540 | CG30093-RA | 85..375 | 303..13 | 1455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15944112..15944402 | 303..13 | 1455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:11:49 has no hits.
BS17372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:37:17 Download gff for
BS17372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30093-PA | 1..285 | 17..301 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:32:23 Download gff for
BS17372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30093-RA | 80..380 | 7..309 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:49 Download gff for
BS17372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30093-RA | 80..380 | 7..309 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:49 Download gff for
BS17372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15944107..15944407 | 7..309 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:32:23 Download gff for
BS17372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11831612..11831912 | 7..309 | 98 | | Minus |
BS17372.5prime Sequence
315 bp (315 high quality bases) assembled on 2007-05-15
> BS17372.5prime
GAAGTTATCAGTCGACATGCCGATCTTTGATATCCGGCTTATGGGCAATA
TGCCCGCCAATACCGCTGGTCTGTGGAAGCGTGTCACCTTCCTGCTGGCC
CTACCGGCCATCGTCCTGTGCGCCGCAAACGCCTTCACCGGACACAAGCA
CGTGGAGCGGGAGCCGTTCGCCAAGTACGAGTACCTGAGGCGGCGGACCA
AACGATTCCCATGGGGAGATGGCAATCGCAGTTTGTTTCACAATGCCGAG
GTGAATGCCCTGCCCGAGGGCTACGAGGATGAGGTGGCTGAGGAGGATTA
AAAGCTTTCTAGACC
BS17372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30093-PA | 285 | CG30093-RA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30093-RA | 540 | CG30093-RA | 85..375 | 15..305 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15944112..15944402 | 15..305 | 1455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:31:37 has no hits.
BS17372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:02 Download gff for
BS17372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30093-PA | 1..285 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:14:44 Download gff for
BS17372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30093-RA | 80..380 | 9..311 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:15 Download gff for
BS17372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30093-RA | 80..380 | 9..311 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:15 Download gff for
BS17372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15944107..15944407 | 9..311 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:14:44 Download gff for
BS17372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11831612..11831912 | 9..311 | 98 | | Plus |
BS17372.pep Sequence
Translation from 16 to 300
> BS17372.pep
MPIFDIRLMGNMPANTAGLWKRVTFLLALPAIVLCAANAFTGHKHVEREP
FAKYEYLRRRTKRFPWGDGNRSLFHNAEVNALPEGYEDEVAEED*
BS17372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30093-PA | 94 | CG30093-PA | 1..94 | 1..94 | 506 | 100 | Plus |
| levy-PB | 109 | CG17280-PB | 37..108 | 19..87 | 234 | 56.9 | Plus |
| levy-PA | 109 | CG17280-PA | 37..108 | 19..87 | 234 | 56.9 | Plus |
| CG14077-PB | 289 | CG14077-PB | 155..234 | 14..92 | 168 | 43.8 | Plus |
| CG14077-PC | 289 | CG14077-PC | 155..234 | 14..92 | 168 | 43.8 | Plus |
