Clone Sequence Records
BS17375.complete Sequence
431 bp assembled on 2010-02-09
GenBank Submission: KX804396
> BS17375.complete
GAAGTTATCAGTCGACATGGATGATTTGGCTAACGAGTACACCGGCAGTG
AAGAGAGGAGTGGAGAAGCCTCCAAGCTCGGACTCCTGGCCAGGGTGGAC
CGTCTGCTCCGGCGCTGGCTGCCTGGATACAGCTTCATTCGCGGCAAGCG
TCTCTCGACATCGGAAACCTCGATCGTGCACGGCTGCTCCCACGGCACAC
AGGCGGTGCGTGGACGTGGTGACCGGATGAATAATAAGGAGGAGGTGTAC
CTGGACACCGGCATCGCCAAGTCGGAGTTCTGCGTCCACCTGGAGACCTT
GCTGCGCAACAAGCTGCTCAAGAAGCAGCAGGAATTGGCCCTGGAACATC
AGGAGAGAAGCCGCGAGATGGAGCTGGAGCAGGAACGGCAGCTCAATCAA
CAAGTTCAGCAGTAGAAGCTTTCTAGACCAT
BS17375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-RA | 399 | CG14631-PA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-RA | 590 | CG14631-RA | 77..477 | 15..415 | 2005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1012111..1012511 | 15..415 | 2005 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3289..3335 | 369..415 | 109 | 70.2 | Plus |
BS17375.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:10 Download gff for
BS17375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:35 Download gff for
BS17375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 79..477 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:44 Download gff for
BS17375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 79..477 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:11 Download gff for
BS17375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 67..477 | 6..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:52 Download gff for
BS17375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 79..477 | 17..415 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:52 Download gff for
BS17375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1012113..1012511 | 17..415 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:44 Download gff for
BS17375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 906146..906544 | 17..415 | 100 | | Plus |
BS17375.3prime Sequence
429 bp (429 high quality bases) assembled on 2007-05-15
> BS17375.3prime
ATGGTCTAGAAAGCTTCTACTGCTGAACTTGTTGATTGAGCTGCCGTTCC
TGCTCCAGCTCCATCTCGCGGCTTCTCTCCTGATGTTCCAGGGCCAATTC
CTGCTGCTTCTTGAGCAGCTTGTTGCGCAGCAAGGTCTCCAGGTGGACGC
AGAACTCCGACTTGGCGATGCCGGTGTCCAGGTACACCTCCTCCTTATTA
TTCATCCGGTCACCACGTCCACGCACCGCCTGTGTGCCGTGGGAGCAGCC
GTGCACGATCGAGGTTTCCGATGTCGAGAGACGCTTGCCGCGAATGAAGC
TGTATCCAGGCAGCCAGCGCCGGAGCAGACGGTCCACCCTGGCCAGGAGT
CCGAGCTTGGAGGCTTCTCCACTCCTCTCTTCACTGCCGGTGTACTCGTT
AGCCAAATCATCCATGTCGACTGATAACT
BS17375.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-PA | 399 | CG14631-RA | 1..399 | 415..17 | 1995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-RA | 590 | CG14631-RA | 77..477 | 417..17 | 2005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1012111..1012511 | 417..17 | 2005 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3289..3335 | 63..17 | 109 | 70.2 | Minus |
BS17375.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:02 Download gff for
BS17375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-PA | 1..399 | 17..415 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:47 Download gff for
BS17375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 67..477 | 17..426 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:35 Download gff for
BS17375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 67..477 | 17..426 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:35 Download gff for
BS17375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1012101..1012511 | 17..426 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:47 Download gff for
BS17375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 906134..906544 | 17..426 | 99 | | Minus |
BS17375.5prime Sequence
429 bp (429 high quality bases) assembled on 2007-05-15
> BS17375.5prime
GAAGTTATCAGTCGACATGGATGATTTGGCTAACGAGTACACCGGCAGTG
AAGAGAGGAGTGGAGAAGCCTCCAAGCTCGGACTCCTGGCCAGGGTGGAC
CGTCTGCTCCGGCGCTGGCTGCCTGGATACAGCTTCATTCGCGGCAAGCG
TCTCTCGACATCGGAAACCTCGATCGTGCACGGCTGCTCCCACGGCACAC
AGGCGGTGCGTGGACGTGGTGACCGGATGAATAATAAGGAGGAGGTGTAC
CTGGACACCGGCATCGCCAAGTCGGAGTTCTGCGTCCACCTGGAGACCTT
GCTGCGCAACAAGCTGCTCAAGAAGCAGCAGGAATTGGCCCTGGAACATC
AGGAGAGAAGCCGCGAGATGGAGCTGGAGCAGGAACGGCAGCTCAATCAA
CAAGTTCAGCAGTAGAAGCTTTCTAGACC
BS17375.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-PA | 399 | CG14631-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-RA | 590 | CG14631-RA | 77..477 | 15..415 | 2005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1012111..1012511 | 15..415 | 2005 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 06:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3289..3335 | 369..415 | 109 | 70.2 | Plus |
BS17375.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:38 Download gff for
BS17375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-PA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:37 Download gff for
BS17375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 67..477 | 6..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:26 Download gff for
BS17375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 67..477 | 6..415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:26 Download gff for
BS17375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1012101..1012511 | 6..415 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:37 Download gff for
BS17375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 906134..906544 | 6..415 | 99 | | Plus |
BS17375.pep Sequence
Translation from 16 to 414
> BS17375.pep
MDDLANEYTGSEERSGEASKLGLLARVDRLLRRWLPGYSFIRGKRLSTSE
TSIVHGCSHGTQAVRGRGDRMNNKEEVYLDTGIAKSEFCVHLETLLRNKL
LKKQQELALEHQERSREMELEQERQLNQQVQQ*
BS17375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-PA | 132 | CG14631-PA | 1..132 | 1..132 | 673 | 100 | Plus |