Clone BS17375 Report

Search the DGRC for BS17375

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG14631-RA
Protein status:BS17375.pep: full length peptide match
Sequenced Size:431

Clone Sequence Records

BS17375.complete Sequence

431 bp assembled on 2010-02-09

GenBank Submission: KX804396

> BS17375.complete
GAAGTTATCAGTCGACATGGATGATTTGGCTAACGAGTACACCGGCAGTG
AAGAGAGGAGTGGAGAAGCCTCCAAGCTCGGACTCCTGGCCAGGGTGGAC
CGTCTGCTCCGGCGCTGGCTGCCTGGATACAGCTTCATTCGCGGCAAGCG
TCTCTCGACATCGGAAACCTCGATCGTGCACGGCTGCTCCCACGGCACAC
AGGCGGTGCGTGGACGTGGTGACCGGATGAATAATAAGGAGGAGGTGTAC
CTGGACACCGGCATCGCCAAGTCGGAGTTCTGCGTCCACCTGGAGACCTT
GCTGCGCAACAAGCTGCTCAAGAAGCAGCAGGAATTGGCCCTGGAACATC
AGGAGAGAAGCCGCGAGATGGAGCTGGAGCAGGAACGGCAGCTCAATCAA
CAAGTTCAGCAGTAGAAGCTTTCTAGACCAT

BS17375.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-RA 399 CG14631-PA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-RA 590 CG14631-RA 77..477 15..415 2005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1012111..1012511 15..415 2005 100 Plus
Blast to na_te.dros performed 2014-11-28 02:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3289..3335 369..415 109 70.2 Plus

BS17375.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:10 Download gff for BS17375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 1..399 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:35 Download gff for BS17375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 79..477 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:44 Download gff for BS17375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 79..477 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:11 Download gff for BS17375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 67..477 6..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:52 Download gff for BS17375.complete
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 79..477 17..415 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:52 Download gff for BS17375.complete
Subject Subject Range Query Range Percent Splice Strand
X 1012113..1012511 17..415 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:44 Download gff for BS17375.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 906146..906544 17..415 100   Plus

BS17375.3prime Sequence

429 bp (429 high quality bases) assembled on 2007-05-15

> BS17375.3prime
ATGGTCTAGAAAGCTTCTACTGCTGAACTTGTTGATTGAGCTGCCGTTCC
TGCTCCAGCTCCATCTCGCGGCTTCTCTCCTGATGTTCCAGGGCCAATTC
CTGCTGCTTCTTGAGCAGCTTGTTGCGCAGCAAGGTCTCCAGGTGGACGC
AGAACTCCGACTTGGCGATGCCGGTGTCCAGGTACACCTCCTCCTTATTA
TTCATCCGGTCACCACGTCCACGCACCGCCTGTGTGCCGTGGGAGCAGCC
GTGCACGATCGAGGTTTCCGATGTCGAGAGACGCTTGCCGCGAATGAAGC
TGTATCCAGGCAGCCAGCGCCGGAGCAGACGGTCCACCCTGGCCAGGAGT
CCGAGCTTGGAGGCTTCTCCACTCCTCTCTTCACTGCCGGTGTACTCGTT
AGCCAAATCATCCATGTCGACTGATAACT

BS17375.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-PA 399 CG14631-RA 1..399 415..17 1995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-RA 590 CG14631-RA 77..477 417..17 2005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1012111..1012511 417..17 2005 100 Minus
Blast to na_te.dros performed 2015-02-12 10:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3289..3335 63..17 109 70.2 Minus

BS17375.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:02 Download gff for BS17375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14631-PA 1..399 17..415 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:47 Download gff for BS17375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 67..477 17..426 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:35 Download gff for BS17375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 67..477 17..426 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:35 Download gff for BS17375.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1012101..1012511 17..426 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:47 Download gff for BS17375.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 906134..906544 17..426 99   Minus

BS17375.5prime Sequence

429 bp (429 high quality bases) assembled on 2007-05-15

> BS17375.5prime
GAAGTTATCAGTCGACATGGATGATTTGGCTAACGAGTACACCGGCAGTG
AAGAGAGGAGTGGAGAAGCCTCCAAGCTCGGACTCCTGGCCAGGGTGGAC
CGTCTGCTCCGGCGCTGGCTGCCTGGATACAGCTTCATTCGCGGCAAGCG
TCTCTCGACATCGGAAACCTCGATCGTGCACGGCTGCTCCCACGGCACAC
AGGCGGTGCGTGGACGTGGTGACCGGATGAATAATAAGGAGGAGGTGTAC
CTGGACACCGGCATCGCCAAGTCGGAGTTCTGCGTCCACCTGGAGACCTT
GCTGCGCAACAAGCTGCTCAAGAAGCAGCAGGAATTGGCCCTGGAACATC
AGGAGAGAAGCCGCGAGATGGAGCTGGAGCAGGAACGGCAGCTCAATCAA
CAAGTTCAGCAGTAGAAGCTTTCTAGACC

BS17375.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-PA 399 CG14631-RA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-RA 590 CG14631-RA 77..477 15..415 2005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1012111..1012511 15..415 2005 100 Plus
Blast to na_te.dros performed 2015-02-13 06:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3289..3335 369..415 109 70.2 Plus

BS17375.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:38 Download gff for BS17375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14631-PA 1..399 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:37 Download gff for BS17375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 67..477 6..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:26 Download gff for BS17375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 67..477 6..415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:26 Download gff for BS17375.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1012101..1012511 6..415 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:37 Download gff for BS17375.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 906134..906544 6..415 99   Plus

BS17375.pep Sequence

Translation from 16 to 414

> BS17375.pep
MDDLANEYTGSEERSGEASKLGLLARVDRLLRRWLPGYSFIRGKRLSTSE
TSIVHGCSHGTQAVRGRGDRMNNKEEVYLDTGIAKSEFCVHLETLLRNKL
LKKQQELALEHQERSREMELEQERQLNQQVQQ*

BS17375.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-PA 132 CG14631-PA 1..132 1..132 673 100 Plus