Clone BS17376 Report

Search the DGRC for BS17376

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG15152-RA
Protein status:BS17376.pep: full length peptide match
Sequenced Size:371

Clone Sequence Records

BS17376.complete Sequence

371 bp assembled on 2010-02-09

GenBank Submission: KX800957

> BS17376.complete
GAAGTTATCAGTCGACATGGACACGGATGAGACTAAGGCTGGAACCTCGG
GTCCGGGGACGTACCACGATGAGGTTGACTTTACCAGCGGATACGAGACT
CAGTATAAGAAGGAGTACAGCCCGCTGAAACCGATTTTTGTACCGCCGCC
GGATAAAAAGCACGCCTGGTTTCGCAACTGGTCCACCATACTGATGGTCA
GCTTCCTGTCCGGGGTGTTTATTCTGGGAACCGTGATGCTGGTGGTCCAA
GTTTTCACCGCCAGTCCCCTGCAGATCTTCATGATCGTGGCTATATATGT
GGCTATAGCCGCTGTGATGATTTGGCTGGAGGTGCAGTCTATAAAAGTGC
GGTGAAAGCTTTCTAGACCAT

BS17376.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-RB 339 CG15152-PB 1..339 17..355 1695 100 Plus
CG15152-RA 339 CG15152-PA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-RB 563 CG15152-RB 26..366 17..357 1705 100 Plus
CG15152-RA 674 CG15152-RA 137..477 17..357 1705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18114683..18115023 17..357 1705 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:42:20 has no hits.

BS17376.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:06 Download gff for BS17376.complete
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 1..339 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:08 Download gff for BS17376.complete
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 137..474 17..354 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:32 Download gff for BS17376.complete
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 137..474 17..354 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:06 Download gff for BS17376.complete
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 134..477 14..357 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:10 Download gff for BS17376.complete
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 137..474 17..354 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:10 Download gff for BS17376.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18114683..18115020 17..354 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:32 Download gff for BS17376.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18114683..18115020 17..354 100   Plus

BS17376.3prime Sequence

369 bp (369 high quality bases) assembled on 2007-05-15

> BS17376.3prime
ATGGTCTAGAAAGCTTTCACCGCACTTTTATAGACTGCACCTCCAGCCAA
ATCATCACAGCGGCTATAGCCACATATATAGCCACGATCATGAAGATCTG
CAGGGGACTGGCGGTGAAAACTTGGACCACCAGCATCACGGTTCCCAGAA
TAAACACCCCGGACAGGAAGCTGACCATCAGTATGGTGGACCAGTTGCGA
AACCAGGCGTGCTTTTTATCCGGCGGCGGTACAAAAATCGGTTTCAGCGG
GCTGTACTCCTTCTTATACTGAGTCTCGTATCCGCTGGTAAAGTCAACCT
CATCGTGGTACGTCCCCGGACCCGAGGTTCCAGCCTTAGTCTCATCCGTG
TCCATGTCGACTGATAACT

BS17376.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-PA 339 CG15152-RA 1..339 355..17 1695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-RB 563 CG15152-RB 26..366 355..15 1705 100 Minus
CG15152-RA 674 CG15152-RA 137..477 355..15 1705 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18114683..18115023 355..15 1705 100 Minus
Blast to na_te.dros performed on 2015-02-04 21:07:40 has no hits.

BS17376.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:37:22 Download gff for BS17376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15152-PA 1..339 17..355 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:29:34 Download gff for BS17376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 134..477 15..358 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:03 Download gff for BS17376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 134..477 15..358 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:03 Download gff for BS17376.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18114680..18115023 15..358 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:34 Download gff for BS17376.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18114680..18115023 15..358 99   Minus

BS17376.5prime Sequence

369 bp (369 high quality bases) assembled on 2007-05-15

> BS17376.5prime
GAAGTTATCAGTCGACATGGACACGGATGAGACTAAGGCTGGAACCTCGG
GTCCGGGGACGTACCACGATGAGGTTGACTTTACCAGCGGATACGAGACT
CAGTATAAGAAGGAGTACAGCCCGCTGAAACCGATTTTTGTACCGCCGCC
GGATAAAAAGCACGCCTGGTTTCGCAACTGGTCCACCATACTGATGGTCA
GCTTCCTGTCCGGGGTGTTTATTCTGGGAACCGTGATGCTGGTGGTCCAA
GTTTTCACCGCCAGTCCCCTGCAGATCTTCATGATCGTGGCTATATATGT
GGCTATAGCCGCTGTGATGATTTGGCTGGAGGTGCAGTCTATAAAAGTGC
GGTGAAAGCTTTCTAGACC

BS17376.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-PA 339 CG15152-RA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-RB 563 CG15152-RB 26..366 17..357 1705 100 Plus
CG15152-RA 674 CG15152-RA 137..477 17..357 1705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18114683..18115023 17..357 1705 100 Plus
Blast to na_te.dros performed on 2015-02-11 21:53:36 has no hits.

BS17376.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:06 Download gff for BS17376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15152-PA 1..339 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:04 Download gff for BS17376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 134..477 14..357 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:38:49 Download gff for BS17376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 134..477 14..357 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:38:49 Download gff for BS17376.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18114680..18115023 14..357 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:04 Download gff for BS17376.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18114680..18115023 14..357 99   Plus

BS17376.pep Sequence

Translation from 16 to 354

> BS17376.pep
MDTDETKAGTSGPGTYHDEVDFTSGYETQYKKEYSPLKPIFVPPPDKKHA
WFRNWSTILMVSFLSGVFILGTVMLVVQVFTASPLQIFMIVAIYVAIAAV
MIWLEVQSIKVR*

BS17376.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-PB 112 CG15152-PB 1..112 1..112 583 100 Plus
CG15152-PA 112 CG15152-PA 1..112 1..112 583 100 Plus