Clone Sequence Records
BS17379.complete Sequence
353 bp assembled on 2010-02-09
GenBank Submission: KX802132
> BS17379.complete
GAAGTTATCAGTCGACATGCCCAGCTCCACTTTGACGTCCTCTACTGCTC
TTCCGGTGAAGCAACGAAATGGATTTGATCTTGGACTCGAACCGTTGCGG
ATCTTAGGAGCCTGCAACTGGTCCGGTAAGCTGACCTTTTTGATGCAGTG
GAAGGGTTGCGACGAAGCCGGCCTGGTGCCCGCCGAAGTGCTCAACGTTC
GGTGCCCCCAAATGGTCATCTCGTTCTACGAGGAGCGTATTGTGTTCACG
GATGAGGGCGATGAAGAAGACTTGGAGTCGGACAATGGGTATGAGACCAC
TCCGAGTCCCAGGAAGAAACGATCACGAAATGCCTAGAAGCTTTCTAGAC
CAT
BS17379.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP6-RA | 321 | CG15636-PA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP6-RA | 500 | CG15636-RA | 116..436 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4577783..4578103 | 337..17 | 1605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:40:02 has no hits.
BS17379.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:43 Download gff for
BS17379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Umbrea-RA | 1..321 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:58 Download gff for
BS17379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Umbrea-RA | 1..321 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:10 Download gff for
BS17379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP6-RA | 99..419 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:43 Download gff for
BS17379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Umbrea-RA | 1..321 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:11 Download gff for
BS17379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP6-RA | 116..436 | 17..337 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:11 Download gff for
BS17379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4577783..4578103 | 17..337 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:10 Download gff for
BS17379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4577783..4578103 | 17..337 | 100 | | Minus |
BS17379.3prime Sequence
351 bp (351 high quality bases) assembled on 2007-05-15
> BS17379.3prime
ATGGTCTAGAAAGCTTCTAGGCATTTCGTGATCGTTTCTTCCTGGGACTC
GGAGTGGTCTCATACCCATTGTCCGACTCCAAGTCTTCTTCATCGCCCTC
ATCCGTGAACACAATACGCTCCTCGTAGAACGAGATGACCATTTGGGGGC
ACCGAACGTTGAGCACTTCGGCGGGCACCAGGCCGGCTTCGTCGCAACCC
TTCCACTGCATCAAAAAGGTCAGCTTACCGGACCAGTTGCAGGCTCCTAA
GATCCGCAACGGTTCGAGTCCAAGATCAAATCCATTTCGTTGCTTCACCG
GAAGAGCAGTAGAGGACGTCAAAGTGGAGCTGGGCATGTCGACTGATAAC
T
BS17379.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15636-PA | 321 | CG15636-RA | 1..321 | 337..17 | 1605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP6-RA | 500 | CG15636-RA | 116..436 | 337..17 | 1605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4577783..4578103 | 17..337 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:59:11 has no hits.
BS17379.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:33:50 Download gff for
BS17379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15636-PA | 1..321 | 17..337 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:42 Download gff for
BS17379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP6-RA | 99..419 | 17..337 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:32:19 Download gff for
BS17379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP6-RA | 116..436 | 17..337 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:32:19 Download gff for
BS17379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4577783..4578103 | 17..337 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:42 Download gff for
BS17379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4577783..4578103 | 17..337 | 100 | | Plus |
BS17379.5prime Sequence
351 bp (351 high quality bases) assembled on 2007-05-15
> BS17379.5prime
GAAGTTATCAGTCGACATGCCCAGCTCCACTTTGACGTCCTCTACTGCTC
TTCCGGTGAAGCAACGAAATGGATTTGATCTTGGACTCGAACCGTTGCGG
ATCTTAGGAGCCTGCAACTGGTCCGGTAAGCTGACCTTTTTGATGCAGTG
GAAGGGTTGCGACGAAGCCGGCCTGGTGCCCGCCGAAGTGCTCAACGTTC
GGTGCCCCCAAATGGTCATCTCGTTCTACGAGGAGCGTATTGTGTTCACG
GATGAGGGCGATGAAGAAGACTTGGAGTCGGACAATGGGTATGAGACCAC
TCCGAGTCCCAGGAAGAAACGATCACGAAATGCCTAGAAGCTTTCTAGAC
C
BS17379.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15636-PA | 321 | CG15636-RA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:16:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP6-RA | 500 | CG15636-RA | 116..436 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:16:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4577783..4578103 | 337..17 | 1605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:16:15 has no hits.
BS17379.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:26 Download gff for
BS17379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15636-PA | 1..321 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:21:08 Download gff for
BS17379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP6-RA | 99..419 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:28 Download gff for
BS17379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP6-RA | 116..436 | 17..337 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:28 Download gff for
BS17379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4577783..4578103 | 17..337 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:21:08 Download gff for
BS17379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4577783..4578103 | 17..337 | 100 | | Minus |
BS17379.pep Sequence
Translation from 16 to 336
> BS17379.pep
MPSSTLTSSTALPVKQRNGFDLGLEPLRILGACNWSGKLTFLMQWKGCDE
AGLVPAEVLNVRCPQMVISFYEERIVFTDEGDEEDLESDNGYETTPSPRK
KRSRNA*
BS17379.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP6-PA | 106 | CG15636-PA | 1..106 | 1..106 | 561 | 100 | Plus |
HP1b-PB | 240 | CG7041-PB | 90..152 | 15..77 | 192 | 58.7 | Plus |
HP1b-PC | 240 | CG7041-PC | 90..152 | 15..77 | 192 | 58.7 | Plus |
HP1b-PA | 240 | CG7041-PA | 90..152 | 15..77 | 192 | 58.7 | Plus |
Su(var)205-PB | 206 | CG8409-PB | 127..206 | 4..83 | 184 | 45 | Plus |