Clone BS17379 Report

Search the DGRC for BS17379

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptHP6-RA
Protein status:BS17379.pep: full length peptide match
Sequenced Size:353

Clone Sequence Records

BS17379.complete Sequence

353 bp assembled on 2010-02-09

GenBank Submission: KX802132

> BS17379.complete
GAAGTTATCAGTCGACATGCCCAGCTCCACTTTGACGTCCTCTACTGCTC
TTCCGGTGAAGCAACGAAATGGATTTGATCTTGGACTCGAACCGTTGCGG
ATCTTAGGAGCCTGCAACTGGTCCGGTAAGCTGACCTTTTTGATGCAGTG
GAAGGGTTGCGACGAAGCCGGCCTGGTGCCCGCCGAAGTGCTCAACGTTC
GGTGCCCCCAAATGGTCATCTCGTTCTACGAGGAGCGTATTGTGTTCACG
GATGAGGGCGATGAAGAAGACTTGGAGTCGGACAATGGGTATGAGACCAC
TCCGAGTCCCAGGAAGAAACGATCACGAAATGCCTAGAAGCTTTCTAGAC
CAT

BS17379.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
HP6-RA 321 CG15636-PA 1..321 17..337 1605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
HP6-RA 500 CG15636-RA 116..436 17..337 1605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4577783..4578103 337..17 1605 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:40:02 has no hits.

BS17379.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:43 Download gff for BS17379.complete
Subject Subject Range Query Range Percent Splice Strand
Umbrea-RA 1..321 17..337 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:58 Download gff for BS17379.complete
Subject Subject Range Query Range Percent Splice Strand
Umbrea-RA 1..321 17..337 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:10 Download gff for BS17379.complete
Subject Subject Range Query Range Percent Splice Strand
HP6-RA 99..419 17..337 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:43 Download gff for BS17379.complete
Subject Subject Range Query Range Percent Splice Strand
Umbrea-RA 1..321 17..337 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:11 Download gff for BS17379.complete
Subject Subject Range Query Range Percent Splice Strand
HP6-RA 116..436 17..337 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:11 Download gff for BS17379.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4577783..4578103 17..337 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:10 Download gff for BS17379.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4577783..4578103 17..337 100   Minus

BS17379.3prime Sequence

351 bp (351 high quality bases) assembled on 2007-05-15

> BS17379.3prime
ATGGTCTAGAAAGCTTCTAGGCATTTCGTGATCGTTTCTTCCTGGGACTC
GGAGTGGTCTCATACCCATTGTCCGACTCCAAGTCTTCTTCATCGCCCTC
ATCCGTGAACACAATACGCTCCTCGTAGAACGAGATGACCATTTGGGGGC
ACCGAACGTTGAGCACTTCGGCGGGCACCAGGCCGGCTTCGTCGCAACCC
TTCCACTGCATCAAAAAGGTCAGCTTACCGGACCAGTTGCAGGCTCCTAA
GATCCGCAACGGTTCGAGTCCAAGATCAAATCCATTTCGTTGCTTCACCG
GAAGAGCAGTAGAGGACGTCAAAGTGGAGCTGGGCATGTCGACTGATAAC
T

BS17379.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG15636-PA 321 CG15636-RA 1..321 337..17 1605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
HP6-RA 500 CG15636-RA 116..436 337..17 1605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4577783..4578103 17..337 1605 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:59:11 has no hits.

BS17379.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:33:50 Download gff for BS17379.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15636-PA 1..321 17..337 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:42 Download gff for BS17379.3prime
Subject Subject Range Query Range Percent Splice Strand
HP6-RA 99..419 17..337 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:32:19 Download gff for BS17379.3prime
Subject Subject Range Query Range Percent Splice Strand
HP6-RA 116..436 17..337 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:32:19 Download gff for BS17379.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4577783..4578103 17..337 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:42 Download gff for BS17379.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4577783..4578103 17..337 100   Plus

BS17379.5prime Sequence

351 bp (351 high quality bases) assembled on 2007-05-15

> BS17379.5prime
GAAGTTATCAGTCGACATGCCCAGCTCCACTTTGACGTCCTCTACTGCTC
TTCCGGTGAAGCAACGAAATGGATTTGATCTTGGACTCGAACCGTTGCGG
ATCTTAGGAGCCTGCAACTGGTCCGGTAAGCTGACCTTTTTGATGCAGTG
GAAGGGTTGCGACGAAGCCGGCCTGGTGCCCGCCGAAGTGCTCAACGTTC
GGTGCCCCCAAATGGTCATCTCGTTCTACGAGGAGCGTATTGTGTTCACG
GATGAGGGCGATGAAGAAGACTTGGAGTCGGACAATGGGTATGAGACCAC
TCCGAGTCCCAGGAAGAAACGATCACGAAATGCCTAGAAGCTTTCTAGAC
C

BS17379.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG15636-PA 321 CG15636-RA 1..321 17..337 1605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
HP6-RA 500 CG15636-RA 116..436 17..337 1605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4577783..4578103 337..17 1605 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:16:15 has no hits.

BS17379.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:26 Download gff for BS17379.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15636-PA 1..321 17..337 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:21:08 Download gff for BS17379.5prime
Subject Subject Range Query Range Percent Splice Strand
HP6-RA 99..419 17..337 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:28 Download gff for BS17379.5prime
Subject Subject Range Query Range Percent Splice Strand
HP6-RA 116..436 17..337 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:28 Download gff for BS17379.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4577783..4578103 17..337 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:21:08 Download gff for BS17379.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4577783..4578103 17..337 100   Minus

BS17379.pep Sequence

Translation from 16 to 336

> BS17379.pep
MPSSTLTSSTALPVKQRNGFDLGLEPLRILGACNWSGKLTFLMQWKGCDE
AGLVPAEVLNVRCPQMVISFYEERIVFTDEGDEEDLESDNGYETTPSPRK
KRSRNA*

BS17379.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
HP6-PA 106 CG15636-PA 1..106 1..106 561 100 Plus
HP1b-PB 240 CG7041-PB 90..152 15..77 192 58.7 Plus
HP1b-PC 240 CG7041-PC 90..152 15..77 192 58.7 Plus
HP1b-PA 240 CG7041-PA 90..152 15..77 192 58.7 Plus
Su(var)205-PB 206 CG8409-PB 127..206 4..83 184 45 Plus