Clone BS17383 Report

Search the DGRC for BS17383

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG14915-RA
Protein status:BS17383.pep: full length peptide match
Sequenced Size:395

Clone Sequence Records

BS17383.complete Sequence

395 bp assembled on 2010-02-09

GenBank Submission: KX801929

> BS17383.complete
GAAGTTATCAGTCGACATGTCGAGCTCTAAACTTGCCCTTCTTATTCTGG
TCATTGCCTGTTTGGTCCTTATCGCATGGGCACGACCCAGGTCGAGATCT
TCAATACTCAATGAGGTCACATCGCTGCCGGCGGAGAGAAGAATGAGCAA
CGAAATCATGGACCAGATATCGCCCATGAGGAGGCCACACAGGAGGGATT
ATTTCGTGAAGAGGCGCCCGGTCATCAGCTCTAGGATGATGATGTCCAGA
AGTCCCTTCCTCGAACGTCTTTACAACGATCCAGTGCCGGAGATTGCACC
AGGTGGAGCCAACTACTTTGGCAATGACGTCCTGCCGCTTTCAACCTACG
AGATCCTGGAACCAGAGTCATTGTATTAGAAGCTTTCTAGACCAT

BS17383.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14915-RA 363 CG14915-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14915-RA 506 CG14915-RA 27..399 9..381 1835 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11071053..11071425 9..381 1835 99.5 Plus
Blast to na_te.dros performed on 2014-11-28 04:43:45 has no hits.

BS17383.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:43 Download gff for BS17383.complete
Subject Subject Range Query Range Percent Splice Strand
CG14915-RA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:14 Download gff for BS17383.complete
Subject Subject Range Query Range Percent Splice Strand
CG14915-RA 6..368 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:51 Download gff for BS17383.complete
Subject Subject Range Query Range Percent Splice Strand
CG14915-RA 35..397 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:44 Download gff for BS17383.complete
Subject Subject Range Query Range Percent Splice Strand
CG14915-RA 1..377 12..388 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:39 Download gff for BS17383.complete
Subject Subject Range Query Range Percent Splice Strand
CG14915-RA 35..397 17..379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:39 Download gff for BS17383.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11071061..11071423 17..379 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:51 Download gff for BS17383.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11071061..11071423 17..379 100   Plus

BS17383.3prime Sequence

393 bp (393 high quality bases) assembled on 2007-05-15

> BS17383.3prime
ATGGTCTAGAAAGCTTCTAATACAATGACTCTGGTTCCAGGATCTCGTAG
GTTGAAAGCGGCAGGACGTCATTGCCAAAGTAGTTGGCTCCACCTGGTGC
AATCTCCGGCACTGGATCGTTGTAAAGACGTTCGAGGAAGGGACTTCTGG
ACATCATCATCCTAGAGCTGATGACCGGGCGCCTCTTCACGAAATAATCC
CTCCTGTGTGGCCTCCTCATGGGCGATATCTGGTCCATGATTTCGTTGCT
CATTCTTCTCTCCGCCGGCAGCGATGTGACCTCATTGAGTATTGAAGATC
TCGACCTGGGTCGTGCCCATGCGATAAGGACCAAACAGGCAATGACCAGA
ATAAGAAGGGCAAGTTTAGAGCTCGACATGTCGACTGATAACT

BS17383.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14915-PA 363 CG14915-RA 1..363 379..17 1815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14915-RA 506 CG14915-RA 27..399 387..15 1835 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11071053..11071425 387..15 1835 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 15:23:02 has no hits.

BS17383.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:37:36 Download gff for BS17383.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14915-PA 1..363 17..379 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:03 Download gff for BS17383.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14915-RA 27..406 8..387 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:11:22 Download gff for BS17383.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14915-RA 27..406 8..387 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:11:22 Download gff for BS17383.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11071053..11071432 8..387 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:03 Download gff for BS17383.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11071053..11071432 8..387 98   Minus

BS17383.5prime Sequence

393 bp (393 high quality bases) assembled on 2007-05-15

> BS17383.5prime
GAAGTTATCAGTCGACATGTCGAGCTCTAAACTTGCCCTTCTTATTCTGG
TCATTGCCTGTTTGGTCCTTATCGCATGGGCACGACCCAGGTCGAGATCT
TCAATACTCAATGAGGTCACATCGCTGCCGGCGGAGAGAAGAATGAGCAA
CGAAATCATGGACCAGATATCGCCCATGAGGAGGCCACACAGGAGGGATT
ATTTCGTGAAGAGGCGCCCGGTCATCAGCTCTAGGATGATGATGTCCAGA
AGTCCCTTCCTCGAACGTCTTTACAACGATCCAGTGCCGGAGATTGCACC
AGGTGGAGCCAACTACTTTGGCAATGACGTCCTGCCGCTTTCAACCTACG
AGATCCTGGAACCAGAGTCATTGTATTAGAAGCTTTCTAGACC

BS17383.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14915-PA 363 CG14915-RA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14915-RA 506 CG14915-RA 27..399 9..381 1835 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11071053..11071425 9..381 1835 99.5 Plus
Blast to na_te.dros performed on 2015-02-13 06:58:02 has no hits.

BS17383.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:21 Download gff for BS17383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14915-PA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:20 Download gff for BS17383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14915-RA 27..406 9..388 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:56 Download gff for BS17383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14915-RA 27..406 9..388 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:56 Download gff for BS17383.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11071053..11071432 9..388 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:20 Download gff for BS17383.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11071053..11071432 9..388 98   Plus

BS17383.pep Sequence

Translation from 16 to 378

> BS17383.pep
MSSSKLALLILVIACLVLIAWARPRSRSSILNEVTSLPAERRMSNEIMDQ
ISPMRRPHRRDYFVKRRPVISSRMMMSRSPFLERLYNDPVPEIAPGGANY
FGNDVLPLSTYEILEPESLY*

BS17383.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14915-PA 120 CG14915-PA 1..120 1..120 608 100 Plus