Clone BS17384 Report

Search the DGRC for BS17384

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG15369-RA
Protein status:BS17384.pep: full length peptide match
Sequenced Size:401

Clone Sequence Records

BS17384.complete Sequence

401 bp assembled on 2010-02-09

GenBank Submission: KX805468

> BS17384.complete
GAAGTTATCAGTCGACATGTTTCTCGCCAAGATTCTAATCCTGTGCACCG
CCTGCGTGTTGGTCAGTGCCACGCCGTTTGGACTCGGTGCACCAAAAGTC
CTCGAAGGCGAGGATCTGGCCAGTGCCCAGCAAACGCTTGAGGCATCCTT
GACCAAATTGGCTGCTGGCGAAGGACCCCACTATCGCCTCTCCAAAATTC
TTTCGGCAACGTCCCAGGTGGTCTCTGGCTTTAAGAATGATTACTCTGTG
GAGCTGATCGATAATCAGGGTGCTACCAAGGTGTGCCAAGTGGACATCTG
GTCGCAAAGCTGGCTTCCCAATGGTATCCAGGTGACCTTCAGGTGCCCAA
ATGAACCAGAACTGGTCAGGAAACACGATGCTTAAAAGCTTTCTAGACCA
T

BS17384.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15369-RB 369 CG15369-PB 1..369 17..385 1845 100 Plus
CG15369-RA 369 CG15369-PA 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG15369-RB 542 CG15369-RB 55..424 17..386 1850 100 Plus
CG15369-RA 444 CG15369-RA 55..424 17..386 1850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9217148..9217348 186..386 1005 100 Plus
X 23542271 X 9216926..9217095 17..186 850 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:50:24 has no hits.

BS17384.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:26 Download gff for BS17384.complete
Subject Subject Range Query Range Percent Splice Strand
CG15369-RA 1..369 17..385 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:19 Download gff for BS17384.complete
Subject Subject Range Query Range Percent Splice Strand
CG15369-RA 40..400 23..383 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:53 Download gff for BS17384.complete
Subject Subject Range Query Range Percent Splice Strand
CG15369-RA 61..421 23..383 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:40 Download gff for BS17384.complete
Subject Subject Range Query Range Percent Splice Strand
CG15369-RA 40..400 23..383 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:09 Download gff for BS17384.complete
Subject Subject Range Query Range Percent Splice Strand
CG15369-RA 61..421 23..383 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:09 Download gff for BS17384.complete
Subject Subject Range Query Range Percent Splice Strand
X 9216932..9217095 23..186 100 -> Plus
X 9217149..9217345 187..383 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:53 Download gff for BS17384.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9111182..9111378 187..383 100   Plus
arm_X 9110965..9111128 23..186 100 -> Plus

BS17384.3prime Sequence

686 bp (685 high quality bases) assembled on 2007-05-15

> BS17384.3prime
TGAGAGGCCCGNNNNANNAANGGNNNANAAAGNNNNNAACCTTTAGGGGG
NNNGANNAGNNNNGGNNNANNNGGGNANGNGAAGGGNAAAGGGAGAGNAN
GGGGAAGNNAGNATCGAGAGGAGANGNGGANNGGGGAGAGNAGGGAAGAA
GNNGGAAAAANGANGNAGAGAAGAGAGAAGAGAAAGAAAAAGNAAGAGAG
GAGGGGGGAAGAAGAAGAAAGAAGGAAGGAGAGGGGAAAGGGGGGNNNNN
NAGGAGNAGNNAANAGGGGGAAGGAAGGNAGAAAGGGGGGGGGGGAAAGG
GNAAGAGNNNAGGAAAGGAGGAGNGGGGGGGGNAAGAGGNGAAAGGGAGG
GGAANAGAAAAAGAGGGAGGGGGGGAAAAGGAAAAGAAAGNGGGNGAGAA
ANAGGNNGANGGANAANAGNGAAAAAGGAAGGAAAAAAGAAGNGAGGNGG
NGGNANAANNGNAAAAAGAAANNGGGGGNNNGGNGGNANGGNNGNGGNGA
GNNAGAGNAAAANAGAGAGNAGAAAAAAAGAAGGAAAGGGNGNNGNNNNA
NAGGGGAAAGGGGGNAAAANGGAAANNNANAGAANNAGGGGAAAANGNAG
GAAAGAANANGNGAGNAAAAGGGNAGNAAAAGGANAGGAAAAGNAAAAAG
GGNGNGNNGNAGGAGANNNNNAANAGGGNNNGNNNA

BS17384.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-15 18:37:43 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 15:39:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2015-02-11 15:39:29 has no hits.
Blast to na_te.dros performed on 2015-02-11 15:39:30 has no hits.

BS17384.3prime Sim4 Records

Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-11 18:24:20 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-11 18:24:20 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-25 19:47:40 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-25 19:47:40 has no hits.

BS17384.5prime Sequence

399 bp (399 high quality bases) assembled on 2007-05-15

> BS17384.5prime
GAAGTTATCAGTCGACATGTTTCTCGCCAAGATTCTAATCCTGTGCACCG
CCTGCGTGTTGGTCAGTGCCACGCCGTTTGGACTCGGTGCACCAAAAGTC
CTCGAAGGCGAGGATCTGGCCAGTGCCCAGCAAACGCTTGAGGCATCCTT
GACCAAATTGGCTGCTGGCGAAGGACCCCACTATCGCCTCTCCAAAATTC
TTTCGGCAACGTCCCAGGTGGTCTCTGGCTTTAAGAATGATTACTCTGTG
GAGCTGATCGATAATCAGGGTGCTACCAAGGTGTGCCAAGTGGACATCTG
GTCGCAAAGCTGGCTTCCCAATGGTATCCAGGTGACCTTCAGGTGCCCAA
ATGAACCAGAACTGGTCAGGAAACACGATGCTTAAAAGCTTTCTAGACC

BS17384.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG15369-PA 369 CG15369-RA 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15369-RB 542 CG15369-RB 55..424 17..386 1850 100 Plus
CG15369-RA 444 CG15369-RA 55..424 17..386 1850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9217148..9217348 186..386 1005 100 Plus
X 23542271 X 9216926..9217095 17..186 850 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:18:18 has no hits.

BS17384.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:32 Download gff for BS17384.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15369-PA 1..369 17..385 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:30 Download gff for BS17384.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15369-RA 55..424 17..386 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:14 Download gff for BS17384.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15369-RA 55..424 17..386 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:14 Download gff for BS17384.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9217149..9217348 187..386 100   Plus
X 9216926..9217095 17..186 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:30 Download gff for BS17384.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9110959..9111128 17..186 100 -> Plus
arm_X 9111182..9111381 187..386 100   Plus

BS17384.pep Sequence

Translation from 16 to 384

> BS17384.pep
MFLAKILILCTACVLVSATPFGLGAPKVLEGEDLASAQQTLEASLTKLAA
GEGPHYRLSKILSATSQVVSGFKNDYSVELIDNQGATKVCQVDIWSQSWL
PNGIQVTFRCPNEPELVRKHDA*

BS17384.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15369-PB 122 CG15369-PB 1..122 1..122 628 100 Plus
CG15369-PA 122 CG15369-PA 1..122 1..122 628 100 Plus
CG31313-PB 124 CG31313-PB 7..120 6..116 188 37.4 Plus
CG31313-PA 124 CG31313-PA 7..120 6..116 188 37.4 Plus
Cys-PA 126 CG8050-PA 12..118 7..113 179 38 Plus