BS17384.complete Sequence
401 bp assembled on 2010-02-09
GenBank Submission: KX805468
> BS17384.complete
GAAGTTATCAGTCGACATGTTTCTCGCCAAGATTCTAATCCTGTGCACCG
CCTGCGTGTTGGTCAGTGCCACGCCGTTTGGACTCGGTGCACCAAAAGTC
CTCGAAGGCGAGGATCTGGCCAGTGCCCAGCAAACGCTTGAGGCATCCTT
GACCAAATTGGCTGCTGGCGAAGGACCCCACTATCGCCTCTCCAAAATTC
TTTCGGCAACGTCCCAGGTGGTCTCTGGCTTTAAGAATGATTACTCTGTG
GAGCTGATCGATAATCAGGGTGCTACCAAGGTGTGCCAAGTGGACATCTG
GTCGCAAAGCTGGCTTCCCAATGGTATCCAGGTGACCTTCAGGTGCCCAA
ATGAACCAGAACTGGTCAGGAAACACGATGCTTAAAAGCTTTCTAGACCA
T
BS17384.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15369-RB | 369 | CG15369-PB | 1..369 | 17..385 | 1845 | 100 | Plus |
CG15369-RA | 369 | CG15369-PA | 1..369 | 17..385 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15369-RB | 542 | CG15369-RB | 55..424 | 17..386 | 1850 | 100 | Plus |
CG15369-RA | 444 | CG15369-RA | 55..424 | 17..386 | 1850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9217148..9217348 | 186..386 | 1005 | 100 | Plus |
X | 23542271 | X | 9216926..9217095 | 17..186 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:50:24 has no hits.
BS17384.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:26 Download gff for
BS17384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 1..369 | 17..385 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:19 Download gff for
BS17384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 40..400 | 23..383 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:53 Download gff for
BS17384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 61..421 | 23..383 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:40 Download gff for
BS17384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 40..400 | 23..383 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:09 Download gff for
BS17384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 61..421 | 23..383 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:09 Download gff for
BS17384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9216932..9217095 | 23..186 | 100 | -> | Plus |
X | 9217149..9217345 | 187..383 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:53 Download gff for
BS17384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9111182..9111378 | 187..383 | 100 | | Plus |
arm_X | 9110965..9111128 | 23..186 | 100 | -> | Plus |
BS17384.3prime Sequence
686 bp (685 high quality bases) assembled on 2007-05-15
> BS17384.3prime
TGAGAGGCCCGNNNNANNAANGGNNNANAAAGNNNNNAACCTTTAGGGGG
NNNGANNAGNNNNGGNNNANNNGGGNANGNGAAGGGNAAAGGGAGAGNAN
GGGGAAGNNAGNATCGAGAGGAGANGNGGANNGGGGAGAGNAGGGAAGAA
GNNGGAAAAANGANGNAGAGAAGAGAGAAGAGAAAGAAAAAGNAAGAGAG
GAGGGGGGAAGAAGAAGAAAGAAGGAAGGAGAGGGGAAAGGGGGGNNNNN
NAGGAGNAGNNAANAGGGGGAAGGAAGGNAGAAAGGGGGGGGGGGAAAGG
GNAAGAGNNNAGGAAAGGAGGAGNGGGGGGGGNAAGAGGNGAAAGGGAGG
GGAANAGAAAAAGAGGGAGGGGGGGAAAAGGAAAAGAAAGNGGGNGAGAA
ANAGGNNGANGGANAANAGNGAAAAAGGAAGGAAAAAAGAAGNGAGGNGG
NGGNANAANNGNAAAAAGAAANNGGGGGNNNGGNGGNANGGNNGNGGNGA
GNNAGAGNAAAANAGAGAGNAGAAAAAAAGAAGGAAAGGGNGNNGNNNNA
NAGGGGAAAGGGGGNAAAANGGAAANNNANAGAANNAGGGGAAAANGNAG
GAAAGAANANGNGAGNAAAAGGGNAGNAAAAGGANAGGAAAAGNAAAAAG
GGNGNGNNGNAGGAGANNNNNAANAGGGNNNGNNNA
BS17384.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-15 18:37:43 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 15:39:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2015-02-11 15:39:29 has no hits.
Blast to na_te.dros performed on 2015-02-11 15:39:30 has no hits.
BS17384.3prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-11 18:24:20 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-11 18:24:20 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-25 19:47:40 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-25 19:47:40 has no hits.
BS17384.5prime Sequence
399 bp (399 high quality bases) assembled on 2007-05-15
> BS17384.5prime
GAAGTTATCAGTCGACATGTTTCTCGCCAAGATTCTAATCCTGTGCACCG
CCTGCGTGTTGGTCAGTGCCACGCCGTTTGGACTCGGTGCACCAAAAGTC
CTCGAAGGCGAGGATCTGGCCAGTGCCCAGCAAACGCTTGAGGCATCCTT
GACCAAATTGGCTGCTGGCGAAGGACCCCACTATCGCCTCTCCAAAATTC
TTTCGGCAACGTCCCAGGTGGTCTCTGGCTTTAAGAATGATTACTCTGTG
GAGCTGATCGATAATCAGGGTGCTACCAAGGTGTGCCAAGTGGACATCTG
GTCGCAAAGCTGGCTTCCCAATGGTATCCAGGTGACCTTCAGGTGCCCAA
ATGAACCAGAACTGGTCAGGAAACACGATGCTTAAAAGCTTTCTAGACC
BS17384.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15369-PA | 369 | CG15369-RA | 1..369 | 17..385 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:18:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15369-RB | 542 | CG15369-RB | 55..424 | 17..386 | 1850 | 100 | Plus |
CG15369-RA | 444 | CG15369-RA | 55..424 | 17..386 | 1850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9217148..9217348 | 186..386 | 1005 | 100 | Plus |
X | 23542271 | X | 9216926..9217095 | 17..186 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:18:18 has no hits.
BS17384.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:32 Download gff for
BS17384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-PA | 1..369 | 17..385 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:30 Download gff for
BS17384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 55..424 | 17..386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:14 Download gff for
BS17384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 55..424 | 17..386 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:14 Download gff for
BS17384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9217149..9217348 | 187..386 | 100 | | Plus |
X | 9216926..9217095 | 17..186 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:30 Download gff for
BS17384.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9110959..9111128 | 17..186 | 100 | -> | Plus |
arm_X | 9111182..9111381 | 187..386 | 100 | | Plus |
BS17384.pep Sequence
Translation from 16 to 384
> BS17384.pep
MFLAKILILCTACVLVSATPFGLGAPKVLEGEDLASAQQTLEASLTKLAA
GEGPHYRLSKILSATSQVVSGFKNDYSVELIDNQGATKVCQVDIWSQSWL
PNGIQVTFRCPNEPELVRKHDA*
BS17384.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15369-PB | 122 | CG15369-PB | 1..122 | 1..122 | 628 | 100 | Plus |
CG15369-PA | 122 | CG15369-PA | 1..122 | 1..122 | 628 | 100 | Plus |
CG31313-PB | 124 | CG31313-PB | 7..120 | 6..116 | 188 | 37.4 | Plus |
CG31313-PA | 124 | CG31313-PA | 7..120 | 6..116 | 188 | 37.4 | Plus |
Cys-PA | 126 | CG8050-PA | 12..118 | 7..113 | 179 | 38 | Plus |