Clone Sequence Records
BS17390.complete Sequence
581 bp assembled on 2010-02-09
GenBank Submission: KX804791
> BS17390.complete
GAAGTTATCAGTCGACATGTCGAAGCCGACAACCCTAAAGGACGCATTGG
CCAAGTGGGAGGACCGCAATAAGCAGCCAGCCGCCACTGCCACGGAAATT
GGACTTCAGTTTCAGTATCCGCCGATCGAGAAAATGGATCCGATTCTCAA
TTCCCTTACCGAGTGCCAAAAGCTCAGCTTGTCCTCAAATATGATTGAGA
AGATTACTGGAATTTCGGGAATGAAGAACCTGAAAGTCCTGAGCCTGGCA
CGTAACAATCTTAAAACGCTCAACGGCATAGAACCACTGGCCGATACTCT
GGAGGAATTGTGGGTCAGCTACAACAACATCGAGAAGACCAAGCCCCTGG
AATCGATGAAGGCCCTGCGTGTGTTTTACATATCCTTTAATATGATCAAG
GACTGGACGGAGTTCATGCGCATGGGTGTTCCACCAAATCTCAGCGAGAT
CACATTTGTGGGAAATCCTTTGAACGAGAACATGGACCAGTCTGCCTTCA
CTGCCGAGGCAGTCCGTCGTCTGCCCAACATGAAGAAACTCGATGGGGAG
CCTGTCATTCGTTAGAAGCTTTCTAGACCAT
BS17390.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-RB | 549 | CG10839-PB | 1..549 | 17..565 | 2745 | 100 | Plus |
CG10839-RC | 549 | CG10839-PC | 1..549 | 17..565 | 2745 | 100 | Plus |
CG10839-RA | 549 | CG10839-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-RB | 1300 | CG10839-RB | 86..635 | 16..565 | 2750 | 100 | Plus |
CG10839-RC | 1023 | CG10839-RC | 86..635 | 16..565 | 2750 | 100 | Plus |
CG10839-RA | 692 | CG10839-RA | 86..635 | 16..565 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15979571..15980120 | 16..565 | 2750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:03:42 has no hits.
BS17390.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:25 Download gff for
BS17390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:31 Download gff for
BS17390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 38..586 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:08 Download gff for
BS17390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 87..635 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:25 Download gff for
BS17390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 29..586 | 8..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:43 Download gff for
BS17390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 87..635 | 17..565 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:43 Download gff for
BS17390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15979572..15980120 | 17..565 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:08 Download gff for
BS17390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15979572..15980120 | 17..565 | 100 | | Plus |
BS17390.3prime Sequence
579 bp (579 high quality bases) assembled on 2007-05-15
> BS17390.3prime
ATGGTCTAGAAAGCTTCTAACGAATGACAGGCTCCCCATCGAGTTTCTTC
ATGTTGGGCAGACGACGGACTGCCTCGGCAGTGAAGGCAGACTGGTCCAT
GTTCTCGTTCAAAGGATTTCCCACAAATGTGATCTCGCTGAGATTTGGTG
GAACACCCATGCGCATGAACTCCGTCCAGTCCTTGATCATATTAAAGGAT
ATGTAAAACACACGCAGGGCCTTCATCGATTCCAGGGGCTTGGTCTTCTC
GATGTTGTTGTAGCTGACCCACAATTCCTCCAGAGTATCGGCCAGTGGTT
CTATGCCGTTGAGCGTTTTAAGATTGTTACGTGCCAGGCTCAGGACTTTC
AGGTTCTTCATTCCCGAAATTCCAGTAATCTTCTCAATCATATTTGAGGA
CAAGCTGAGCTTTTGGCACTCGGTAAGGGAATTGAGAATCGGATCCATTT
TCTCGATCGGCGGATACTGAAACTGAAGTCCAATTTCCGTGGCAGTGGCG
GCTGGCTGCTTATTGCGGTCCTCCCACTTGGCCAATGCGTCCTTTAGGGT
TGTCGGCTTCGACATGTCGACTGATAACT
BS17390.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-PA | 549 | CG10839-RA | 1..549 | 565..17 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:29:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-RB | 1300 | CG10839-RB | 86..635 | 566..17 | 2750 | 100 | Minus |
CG10839-RC | 1023 | CG10839-RC | 86..635 | 566..17 | 2750 | 100 | Minus |
CG10839-RA | 692 | CG10839-RA | 86..635 | 566..17 | 2750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15979571..15980120 | 566..17 | 2750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:29:26 has no hits.
BS17390.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:38:08 Download gff for
BS17390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-PA | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:47:01 Download gff for
BS17390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 78..635 | 17..574 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:28:51 Download gff for
BS17390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 78..635 | 17..574 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:28:51 Download gff for
BS17390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15979563..15980123 | 14..574 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:47:01 Download gff for
BS17390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15979563..15980123 | 14..574 | 98 | <- | Minus |
BS17390.5prime Sequence
579 bp (579 high quality bases) assembled on 2007-05-15
> BS17390.5prime
GAAGTTATCAGTCGACATGTCGAAGCCGACAACCCTAAAGGACGCATTGG
CCAAGTGGGAGGACCGCAATAAGCAGCCAGCCGCCACTGCCACGGAAATT
GGACTTCAGTTTCAGTATCCGCCGATCGAGAAAATGGATCCGATTCTCAA
TTCCCTTACCGAGTGCCAAAAGCTCAGCTTGTCCTCAAATATGATTGAGA
AGATTACTGGAATTTCGGGAATGAAGAACCTGAAAGTCCTGAGCCTGGCA
CGTAACAATCTTAAAACGCTCAACGGCATAGAACCACTGGCCGATACTCT
GGAGGAATTGTGGGTCAGCTACAACAACATCGAGAAGACCAAGCCCCTGG
AATCGATGAAGGCCCTGCGTGTGTTTTACATATCCTTTAATATGATCAAG
GACTGGACGGAGTTCATGCGCATGGGTGTTCCACCAAATCTCAGCGAGAT
CACATTTGTGGGAAATCCTTTGAACGAGAACATGGACCAGTCTGCCTTCA
CTGCCGAGGCAGTCCGTCGTCTGCCCAACATGAAGAAACTCGATGGGGAG
CCTGTCATTCGTTAGAAGCTTTCTAGACC
BS17390.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-PA | 549 | CG10839-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-RB | 1300 | CG10839-RB | 86..635 | 16..565 | 2750 | 100 | Plus |
CG10839-RC | 1023 | CG10839-RC | 86..635 | 16..565 | 2750 | 100 | Plus |
CG10839-RA | 692 | CG10839-RA | 86..635 | 16..565 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15979571..15980120 | 16..565 | 2750 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:08:49 has no hits.
BS17390.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:54 Download gff for
BS17390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:50:31 Download gff for
BS17390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 78..635 | 8..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:03 Download gff for
BS17390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 78..635 | 8..565 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:03 Download gff for
BS17390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15979563..15980120 | 8..565 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:50:31 Download gff for
BS17390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15979563..15980120 | 8..565 | 99 | | Plus |
BS17390.pep Sequence
Translation from 16 to 564
> BS17390.pep
MSKPTTLKDALAKWEDRNKQPAATATEIGLQFQYPPIEKMDPILNSLTEC
QKLSLSSNMIEKITGISGMKNLKVLSLARNNLKTLNGIEPLADTLEELWV
SYNNIEKTKPLESMKALRVFYISFNMIKDWTEFMRMGVPPNLSEITFVGN
PLNENMDQSAFTAEAVRRLPNMKKLDGEPVIR*
BS17390.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-PB | 182 | CG10839-PB | 1..182 | 1..182 | 934 | 100 | Plus |
CG10839-PC | 182 | CG10839-PC | 1..182 | 1..182 | 934 | 100 | Plus |
CG10839-PA | 182 | CG10839-PA | 1..182 | 1..182 | 934 | 100 | Plus |
CG8800-PA | 188 | CG8800-PA | 1..181 | 1..181 | 553 | 56.4 | Plus |