Clone BS17390 Report

Search the DGRC for BS17390

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG10839-RA
Protein status:BS17390.pep: full length peptide match
Sequenced Size:581

Clone Sequence Records

BS17390.complete Sequence

581 bp assembled on 2010-02-09

GenBank Submission: KX804791

> BS17390.complete
GAAGTTATCAGTCGACATGTCGAAGCCGACAACCCTAAAGGACGCATTGG
CCAAGTGGGAGGACCGCAATAAGCAGCCAGCCGCCACTGCCACGGAAATT
GGACTTCAGTTTCAGTATCCGCCGATCGAGAAAATGGATCCGATTCTCAA
TTCCCTTACCGAGTGCCAAAAGCTCAGCTTGTCCTCAAATATGATTGAGA
AGATTACTGGAATTTCGGGAATGAAGAACCTGAAAGTCCTGAGCCTGGCA
CGTAACAATCTTAAAACGCTCAACGGCATAGAACCACTGGCCGATACTCT
GGAGGAATTGTGGGTCAGCTACAACAACATCGAGAAGACCAAGCCCCTGG
AATCGATGAAGGCCCTGCGTGTGTTTTACATATCCTTTAATATGATCAAG
GACTGGACGGAGTTCATGCGCATGGGTGTTCCACCAAATCTCAGCGAGAT
CACATTTGTGGGAAATCCTTTGAACGAGAACATGGACCAGTCTGCCTTCA
CTGCCGAGGCAGTCCGTCGTCTGCCCAACATGAAGAAACTCGATGGGGAG
CCTGTCATTCGTTAGAAGCTTTCTAGACCAT

BS17390.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-RB 549 CG10839-PB 1..549 17..565 2745 100 Plus
CG10839-RC 549 CG10839-PC 1..549 17..565 2745 100 Plus
CG10839-RA 549 CG10839-PA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-RB 1300 CG10839-RB 86..635 16..565 2750 100 Plus
CG10839-RC 1023 CG10839-RC 86..635 16..565 2750 100 Plus
CG10839-RA 692 CG10839-RA 86..635 16..565 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15979571..15980120 16..565 2750 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:03:42 has no hits.

BS17390.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:25 Download gff for BS17390.complete
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:31 Download gff for BS17390.complete
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 38..586 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:08 Download gff for BS17390.complete
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 87..635 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:25 Download gff for BS17390.complete
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 29..586 8..565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:43 Download gff for BS17390.complete
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 87..635 17..565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:43 Download gff for BS17390.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15979572..15980120 17..565 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:08 Download gff for BS17390.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15979572..15980120 17..565 100   Plus

BS17390.3prime Sequence

579 bp (579 high quality bases) assembled on 2007-05-15

> BS17390.3prime
ATGGTCTAGAAAGCTTCTAACGAATGACAGGCTCCCCATCGAGTTTCTTC
ATGTTGGGCAGACGACGGACTGCCTCGGCAGTGAAGGCAGACTGGTCCAT
GTTCTCGTTCAAAGGATTTCCCACAAATGTGATCTCGCTGAGATTTGGTG
GAACACCCATGCGCATGAACTCCGTCCAGTCCTTGATCATATTAAAGGAT
ATGTAAAACACACGCAGGGCCTTCATCGATTCCAGGGGCTTGGTCTTCTC
GATGTTGTTGTAGCTGACCCACAATTCCTCCAGAGTATCGGCCAGTGGTT
CTATGCCGTTGAGCGTTTTAAGATTGTTACGTGCCAGGCTCAGGACTTTC
AGGTTCTTCATTCCCGAAATTCCAGTAATCTTCTCAATCATATTTGAGGA
CAAGCTGAGCTTTTGGCACTCGGTAAGGGAATTGAGAATCGGATCCATTT
TCTCGATCGGCGGATACTGAAACTGAAGTCCAATTTCCGTGGCAGTGGCG
GCTGGCTGCTTATTGCGGTCCTCCCACTTGGCCAATGCGTCCTTTAGGGT
TGTCGGCTTCGACATGTCGACTGATAACT

BS17390.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-PA 549 CG10839-RA 1..549 565..17 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-RB 1300 CG10839-RB 86..635 566..17 2750 100 Minus
CG10839-RC 1023 CG10839-RC 86..635 566..17 2750 100 Minus
CG10839-RA 692 CG10839-RA 86..635 566..17 2750 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15979571..15980120 566..17 2750 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:29:26 has no hits.

BS17390.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:38:08 Download gff for BS17390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10839-PA 1..549 17..565 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:47:01 Download gff for BS17390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 78..635 17..574 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:28:51 Download gff for BS17390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 78..635 17..574 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:28:51 Download gff for BS17390.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15979563..15980123 14..574 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:47:01 Download gff for BS17390.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15979563..15980123 14..574 98 <- Minus

BS17390.5prime Sequence

579 bp (579 high quality bases) assembled on 2007-05-15

> BS17390.5prime
GAAGTTATCAGTCGACATGTCGAAGCCGACAACCCTAAAGGACGCATTGG
CCAAGTGGGAGGACCGCAATAAGCAGCCAGCCGCCACTGCCACGGAAATT
GGACTTCAGTTTCAGTATCCGCCGATCGAGAAAATGGATCCGATTCTCAA
TTCCCTTACCGAGTGCCAAAAGCTCAGCTTGTCCTCAAATATGATTGAGA
AGATTACTGGAATTTCGGGAATGAAGAACCTGAAAGTCCTGAGCCTGGCA
CGTAACAATCTTAAAACGCTCAACGGCATAGAACCACTGGCCGATACTCT
GGAGGAATTGTGGGTCAGCTACAACAACATCGAGAAGACCAAGCCCCTGG
AATCGATGAAGGCCCTGCGTGTGTTTTACATATCCTTTAATATGATCAAG
GACTGGACGGAGTTCATGCGCATGGGTGTTCCACCAAATCTCAGCGAGAT
CACATTTGTGGGAAATCCTTTGAACGAGAACATGGACCAGTCTGCCTTCA
CTGCCGAGGCAGTCCGTCGTCTGCCCAACATGAAGAAACTCGATGGGGAG
CCTGTCATTCGTTAGAAGCTTTCTAGACC

BS17390.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-PA 549 CG10839-RA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-RB 1300 CG10839-RB 86..635 16..565 2750 100 Plus
CG10839-RC 1023 CG10839-RC 86..635 16..565 2750 100 Plus
CG10839-RA 692 CG10839-RA 86..635 16..565 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15979571..15980120 16..565 2750 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:08:49 has no hits.

BS17390.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:54 Download gff for BS17390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10839-PA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:50:31 Download gff for BS17390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 78..635 8..565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:03 Download gff for BS17390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 78..635 8..565 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:03 Download gff for BS17390.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15979563..15980120 8..565 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:50:31 Download gff for BS17390.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15979563..15980120 8..565 99   Plus

BS17390.pep Sequence

Translation from 16 to 564

> BS17390.pep
MSKPTTLKDALAKWEDRNKQPAATATEIGLQFQYPPIEKMDPILNSLTEC
QKLSLSSNMIEKITGISGMKNLKVLSLARNNLKTLNGIEPLADTLEELWV
SYNNIEKTKPLESMKALRVFYISFNMIKDWTEFMRMGVPPNLSEITFVGN
PLNENMDQSAFTAEAVRRLPNMKKLDGEPVIR*

BS17390.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-PB 182 CG10839-PB 1..182 1..182 934 100 Plus
CG10839-PC 182 CG10839-PC 1..182 1..182 934 100 Plus
CG10839-PA 182 CG10839-PA 1..182 1..182 934 100 Plus
CG8800-PA 188 CG8800-PA 1..181 1..181 553 56.4 Plus