Clone BS17391 Report

Search the DGRC for BS17391

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG12027-RA
Protein status:BS17391.pep: full length peptide match
Sequenced Size:476

Clone Sequence Records

BS17391.complete Sequence

476 bp assembled on 2010-02-09

GenBank Submission: KX803676

> BS17391.complete
GAAGTTATCAGTCGACATGTTTAGCCGTTTCCTAAAACCAAGCCTAGTTT
TATGTAGGAGTGTGAGCAATACCGCATCCCTTCGCTACAAGGATCCCATT
TATCAGATTTTCCTGGACAAGGTGCGCGAGTATCGGCTGAAGAGTCCCAA
GGGAAAGCCCGTAGATCCTGGTCCGGAATTCGAGGCGGAGCTGAAGGAAG
TCACTGAGCGCCTGGCTCTGCAATACGGCGGCGGCGAGGGCGTGGATATG
CTCGAGTTTCCGAAATTCAAGTTGCCCGATATTGATATTGATCCCATTTC
GGTTGATGATCTACCAGAGAACCAACCAAAGCCTGAGAAAAAGAATAGAG
ATAAAGAAGTAAAGGCCAAAGAAAAGGGTGGGGAAAAAGAAGTGAAAGCC
AAAGATGGCAAGAAAGCTGACGAACCAAAGGGCAAGGATGAAAAGGACAA
GATAAAGTAGAAGCTTTCTAGACCAT

BS17391.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12027-RA 444 CG12027-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12027-RA 635 CG12027-RA 39..483 17..461 2225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5011800..5012095 312..17 1480 100 Minus
3L 28110227 3L 5011596..5011744 461..313 745 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:59:55 has no hits.

BS17391.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:28:35 Download gff for BS17391.complete
Subject Subject Range Query Range Percent Splice Strand
CG12027-RA 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:02 Download gff for BS17391.complete
Subject Subject Range Query Range Percent Splice Strand
CG12027-RA 26..463 23..460 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:26 Download gff for BS17391.complete
Subject Subject Range Query Range Percent Splice Strand
CG12027-RA 45..482 23..460 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:28:35 Download gff for BS17391.complete
Subject Subject Range Query Range Percent Splice Strand
CG12027-RA 20..464 17..461 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:23 Download gff for BS17391.complete
Subject Subject Range Query Range Percent Splice Strand
CG12027-RA 45..482 23..460 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:23 Download gff for BS17391.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5011597..5011744 313..460 100 <- Minus
3L 5011800..5012089 23..312 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:26 Download gff for BS17391.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5011597..5011744 313..460 100 <- Minus
arm_3L 5011800..5012089 23..312 100   Minus

BS17391.3prime Sequence

474 bp (474 high quality bases) assembled on 2007-05-15

> BS17391.3prime
ATGGTCTAGAAAGCTTCTACTTTATCTTGTCCTTTTCATCCTTGCCCTTT
GGTTCGTCAGCTTTCTTGCCATCTTTGGCTTTCACTTCTTTTTCCCCACC
CTTTTCTTTGGCCTTTACTTCTTTATCTCTATTCTTTTTCTCAGGCTTTG
GTTGGTTCTCTGGTAGATCATCAACCGAAATGGGATCAATATCAATATCG
GGCAACTTGAATTTCGGAAACTCGAGCATATCCACGCCCTCGCCGCCGCC
GTATTGCAGAGCCAGGCGCTCAGTGACTTCCTTCAGCTCCGCCTCGAATT
CCGGACCAGGATCTACGGGCTTTCCCTTGGGACTCTTCAGCCGATACTCG
CGCACCTTGTCCAGGAAAATCTGATAAATGGGATCCTTGTAGCGAAGGGA
TGCGGTATTGCTCACACTCCTACATAAAACTAGGCTTGGTTTTAGGAAAC
GGCTAAACATGTCGACTGATAACT

BS17391.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12027-PA 444 CG12027-RA 1..444 460..17 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12027-RA 635 CG12027-RA 39..483 460..16 2225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5011800..5012095 165..460 1480 100 Plus
3L 28110227 3L 5011596..5011744 16..164 745 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:10:11 has no hits.

BS17391.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:16 Download gff for BS17391.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12027-PA 1..444 17..460 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:49 Download gff for BS17391.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12027-RA 39..483 16..460 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:10 Download gff for BS17391.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12027-RA 39..483 16..460 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:10 Download gff for BS17391.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5011596..5011744 16..164 100 <- Plus
3L 5011800..5012095 165..460 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:49 Download gff for BS17391.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5011596..5011744 16..164 100 <- Plus
arm_3L 5011800..5012095 165..460 100   Plus

BS17391.5prime Sequence

474 bp (474 high quality bases) assembled on 2007-05-15

> BS17391.5prime
GAAGTTATCAGTCGACATGTTTAGCCGTTTCCTAAAACCAAGCCTAGTTT
TATGTAGGAGTGTGAGCAATACCGCATCCCTTCGCTACAAGGATCCCATT
TATCAGATTTTCCTGGACAAGGTGCGCGAGTATCGGCTGAAGAGTCCCAA
GGGAAAGCCCGTAGATCCTGGTCCGGAATTCGAGGCGGAGCTGAAGGAAG
TCACTGAGCGCCTGGCTCTGCAATACGGCGGCGGCGAGGGCGTGGATATG
CTCGAGTTTCCGAAATTCAAGTTGCCCGATATTGATATTGATCCCATTTC
GGTTGATGATCTACCAGAGAACCAACCAAAGCCTGAGAAAAAGAATAGAG
ATAAAGAAGTAAAGGCCAAAGAAAAGGGTGGGGAAAAAGAAGTGAAAGCC
AAAGATGGCAAGAAAGCTGACGAACCAAAGGGCAAGGATGAAAAGGACAA
GATAAAGTAGAAGCTTTCTAGACC

BS17391.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12027-PA 444 CG12027-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12027-RA 635 CG12027-RA 39..483 17..461 2225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5011800..5012095 312..17 1480 100 Minus
3L 28110227 3L 5011596..5011744 461..313 745 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:07:12 has no hits.

BS17391.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:51 Download gff for BS17391.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12027-PA 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:34 Download gff for BS17391.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12027-RA 39..483 17..461 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:47 Download gff for BS17391.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12027-RA 39..483 17..461 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:47 Download gff for BS17391.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5011596..5011744 313..461 100 <- Minus
3L 5011800..5012095 17..312 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:34 Download gff for BS17391.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5011596..5011744 313..461 100 <- Minus
arm_3L 5011800..5012095 17..312 100   Minus

BS17391.pep Sequence

Translation from 16 to 459

> BS17391.pep
MFSRFLKPSLVLCRSVSNTASLRYKDPIYQIFLDKVREYRLKSPKGKPVD
PGPEFEAELKEVTERLALQYGGGEGVDMLEFPKFKLPDIDIDPISVDDLP
ENQPKPEKKNRDKEVKAKEKGGEKEVKAKDGKKADEPKGKDEKDKIK*

BS17391.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12027-PA 147 CG12027-PA 1..147 1..147 766 100 Plus
ATPsyn-Cf6-PB 106 CG4412-PB 33..102 26..95 203 54.3 Plus
ATPsyn-Cf6-PC 106 CG4412-PC 33..102 26..95 203 54.3 Plus
ATPsyn-Cf6-PA 106 CG4412-PA 33..102 26..95 203 54.3 Plus