Clone Sequence Records
BS17391.complete Sequence
476 bp assembled on 2010-02-09
GenBank Submission: KX803676
> BS17391.complete
GAAGTTATCAGTCGACATGTTTAGCCGTTTCCTAAAACCAAGCCTAGTTT
TATGTAGGAGTGTGAGCAATACCGCATCCCTTCGCTACAAGGATCCCATT
TATCAGATTTTCCTGGACAAGGTGCGCGAGTATCGGCTGAAGAGTCCCAA
GGGAAAGCCCGTAGATCCTGGTCCGGAATTCGAGGCGGAGCTGAAGGAAG
TCACTGAGCGCCTGGCTCTGCAATACGGCGGCGGCGAGGGCGTGGATATG
CTCGAGTTTCCGAAATTCAAGTTGCCCGATATTGATATTGATCCCATTTC
GGTTGATGATCTACCAGAGAACCAACCAAAGCCTGAGAAAAAGAATAGAG
ATAAAGAAGTAAAGGCCAAAGAAAAGGGTGGGGAAAAAGAAGTGAAAGCC
AAAGATGGCAAGAAAGCTGACGAACCAAAGGGCAAGGATGAAAAGGACAA
GATAAAGTAGAAGCTTTCTAGACCAT
BS17391.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12027-RA | 444 | CG12027-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12027-RA | 635 | CG12027-RA | 39..483 | 17..461 | 2225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5011800..5012095 | 312..17 | 1480 | 100 | Minus |
3L | 28110227 | 3L | 5011596..5011744 | 461..313 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:59:55 has no hits.
BS17391.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:28:35 Download gff for
BS17391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12027-RA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:02 Download gff for
BS17391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12027-RA | 26..463 | 23..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:26 Download gff for
BS17391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12027-RA | 45..482 | 23..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:28:35 Download gff for
BS17391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12027-RA | 20..464 | 17..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:23 Download gff for
BS17391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12027-RA | 45..482 | 23..460 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:23 Download gff for
BS17391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5011597..5011744 | 313..460 | 100 | <- | Minus |
3L | 5011800..5012089 | 23..312 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:26 Download gff for
BS17391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5011597..5011744 | 313..460 | 100 | <- | Minus |
arm_3L | 5011800..5012089 | 23..312 | 100 | | Minus |
BS17391.3prime Sequence
474 bp (474 high quality bases) assembled on 2007-05-15
> BS17391.3prime
ATGGTCTAGAAAGCTTCTACTTTATCTTGTCCTTTTCATCCTTGCCCTTT
GGTTCGTCAGCTTTCTTGCCATCTTTGGCTTTCACTTCTTTTTCCCCACC
CTTTTCTTTGGCCTTTACTTCTTTATCTCTATTCTTTTTCTCAGGCTTTG
GTTGGTTCTCTGGTAGATCATCAACCGAAATGGGATCAATATCAATATCG
GGCAACTTGAATTTCGGAAACTCGAGCATATCCACGCCCTCGCCGCCGCC
GTATTGCAGAGCCAGGCGCTCAGTGACTTCCTTCAGCTCCGCCTCGAATT
CCGGACCAGGATCTACGGGCTTTCCCTTGGGACTCTTCAGCCGATACTCG
CGCACCTTGTCCAGGAAAATCTGATAAATGGGATCCTTGTAGCGAAGGGA
TGCGGTATTGCTCACACTCCTACATAAAACTAGGCTTGGTTTTAGGAAAC
GGCTAAACATGTCGACTGATAACT
BS17391.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12027-PA | 444 | CG12027-RA | 1..444 | 460..17 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12027-RA | 635 | CG12027-RA | 39..483 | 460..16 | 2225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5011800..5012095 | 165..460 | 1480 | 100 | Plus |
3L | 28110227 | 3L | 5011596..5011744 | 16..164 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:10:11 has no hits.
BS17391.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:16 Download gff for
BS17391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12027-PA | 1..444 | 17..460 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:49 Download gff for
BS17391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12027-RA | 39..483 | 16..460 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:10 Download gff for
BS17391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12027-RA | 39..483 | 16..460 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:10 Download gff for
BS17391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5011596..5011744 | 16..164 | 100 | <- | Plus |
3L | 5011800..5012095 | 165..460 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:49 Download gff for
BS17391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5011596..5011744 | 16..164 | 100 | <- | Plus |
arm_3L | 5011800..5012095 | 165..460 | 100 | | Plus |
BS17391.5prime Sequence
474 bp (474 high quality bases) assembled on 2007-05-15
> BS17391.5prime
GAAGTTATCAGTCGACATGTTTAGCCGTTTCCTAAAACCAAGCCTAGTTT
TATGTAGGAGTGTGAGCAATACCGCATCCCTTCGCTACAAGGATCCCATT
TATCAGATTTTCCTGGACAAGGTGCGCGAGTATCGGCTGAAGAGTCCCAA
GGGAAAGCCCGTAGATCCTGGTCCGGAATTCGAGGCGGAGCTGAAGGAAG
TCACTGAGCGCCTGGCTCTGCAATACGGCGGCGGCGAGGGCGTGGATATG
CTCGAGTTTCCGAAATTCAAGTTGCCCGATATTGATATTGATCCCATTTC
GGTTGATGATCTACCAGAGAACCAACCAAAGCCTGAGAAAAAGAATAGAG
ATAAAGAAGTAAAGGCCAAAGAAAAGGGTGGGGAAAAAGAAGTGAAAGCC
AAAGATGGCAAGAAAGCTGACGAACCAAAGGGCAAGGATGAAAAGGACAA
GATAAAGTAGAAGCTTTCTAGACC
BS17391.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12027-PA | 444 | CG12027-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12027-RA | 635 | CG12027-RA | 39..483 | 17..461 | 2225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5011800..5012095 | 312..17 | 1480 | 100 | Minus |
3L | 28110227 | 3L | 5011596..5011744 | 461..313 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:07:12 has no hits.
BS17391.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:51 Download gff for
BS17391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12027-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:34 Download gff for
BS17391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12027-RA | 39..483 | 17..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:47 Download gff for
BS17391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12027-RA | 39..483 | 17..461 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:47 Download gff for
BS17391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5011596..5011744 | 313..461 | 100 | <- | Minus |
3L | 5011800..5012095 | 17..312 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:34 Download gff for
BS17391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5011596..5011744 | 313..461 | 100 | <- | Minus |
arm_3L | 5011800..5012095 | 17..312 | 100 | | Minus |
BS17391.pep Sequence
Translation from 16 to 459
> BS17391.pep
MFSRFLKPSLVLCRSVSNTASLRYKDPIYQIFLDKVREYRLKSPKGKPVD
PGPEFEAELKEVTERLALQYGGGEGVDMLEFPKFKLPDIDIDPISVDDLP
ENQPKPEKKNRDKEVKAKEKGGEKEVKAKDGKKADEPKGKDEKDKIK*
BS17391.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12027-PA | 147 | CG12027-PA | 1..147 | 1..147 | 766 | 100 | Plus |
ATPsyn-Cf6-PB | 106 | CG4412-PB | 33..102 | 26..95 | 203 | 54.3 | Plus |
ATPsyn-Cf6-PC | 106 | CG4412-PC | 33..102 | 26..95 | 203 | 54.3 | Plus |
ATPsyn-Cf6-PA | 106 | CG4412-PA | 33..102 | 26..95 | 203 | 54.3 | Plus |