Clone BS17392 Report

Search the DGRC for BS17392

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:173
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG12464-RA
Protein status:BS17392.pep: full length peptide match
Sequenced Size:410

Clone Sequence Records

BS17392.complete Sequence

410 bp assembled on 2010-02-09

GenBank Submission: KX800602

> BS17392.complete
GAAGTTATCAGTCGACATGAAATACAGCCCCACCATGCGTGCTCCTTTAA
GAATTCCGCTTTTATGGCGCCCAACGTTTTGGCGCTTGAAGATCGCTTAT
GGTTACTCAAAGGATGTCAATACCCTCAAGCGTTTGGGCGCCAGTCCGCG
AAATGTACGCGATCACCCCGAAGGATGTACGCCCCAAACTTTGAACACAA
CTGCCTTCACTACTCCCGATTTCATACACCCATCCACCTATCGGATTGTG
GATAAAAAGGAGCAACTTGGACCCAAGGCAGGAAAAAAGCAAACGTACAA
GAATCCCGAGTACTACAGCTATTATCGCTACTCGTACTACGAGCTGAAGA
CAATCGTGGATACCATTAAAAAGAAGCAATCATCTAAGAAGTAAAAGCTT
TCTAGACCAT

BS17392.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-RA 378 CG12464-PA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-RA 506 CG12464-RA 54..431 17..394 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13608748..13609125 394..17 1890 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:44:02 has no hits.

BS17392.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:45 Download gff for BS17392.complete
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 1..378 17..394 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:18 Download gff for BS17392.complete
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..429 17..392 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:55 Download gff for BS17392.complete
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..429 17..392 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:45 Download gff for BS17392.complete
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..431 17..394 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:46 Download gff for BS17392.complete
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..429 17..392 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:46 Download gff for BS17392.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13608750..13609125 17..392 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:55 Download gff for BS17392.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9496255..9496630 17..392 100   Minus

BS17392.3prime Sequence

408 bp (408 high quality bases) assembled on 2007-05-15

> BS17392.3prime
ATGGTCTAGAAAGCTTTTACTTCTTAGATGATTGCTTCTTTTTAATGGTA
TCCACGATTGTCTTCAGCTCGTAGTACGAGTAGCGATAATAGCTGTAGTA
CTCGGGATTCTTGTACGTTTGCTTTTTTCCTGCCTTGGGTCCAAGTTGCT
CCTTTTTATCCACAATCCGATAGGTGGATGGGTGTATGAAATCGGGAGTA
GTGAAGGCAGTTGTGTTCAAAGTTTGGGGCGTACATCCTTCGGGGTGATC
GCGTACATTTCGCGGACTGGCGCCCAAACGCTTGAGGGTATTGACATCCT
TTGAGTAACCATAAGCGATCTTCAAGCGCCAAAACGTTGGGCGCCATAAA
AGCGGAATTCTTAAAGGAGCACGCATGGTGGGGCTGTATTTCATGTCGAC
TGATAACT

BS17392.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-PA 378 CG12464-RA 1..378 394..17 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-RA 506 CG12464-RA 54..431 394..17 1890 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13608748..13609125 17..394 1890 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:56:11 has no hits.

BS17392.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:25 Download gff for BS17392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12464-PA 1..378 17..394 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:31 Download gff for BS17392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..431 17..394 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:18 Download gff for BS17392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..431 17..394 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:18 Download gff for BS17392.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13608748..13609125 17..394 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:31 Download gff for BS17392.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9496253..9496630 17..394 100   Plus

BS17392.5prime Sequence

408 bp (408 high quality bases) assembled on 2007-05-15

> BS17392.5prime
GAAGTTATCAGTCGACATGAAATACAGCCCCACCATGCGTGCTCCTTTAA
GAATTCCGCTTTTATGGCGCCCAACGTTTTGGCGCTTGAAGATCGCTTAT
GGTTACTCAAAGGATGTCAATACCCTCAAGCGTTTGGGCGCCAGTCCGCG
AAATGTACGCGATCACCCCGAAGGATGTACGCCCCAAACTTTGAACACAA
CTGCCTTCACTACTCCCGATTTCATACACCCATCCACCTATCGGATTGTG
GATAAAAAGGAGCAACTTGGACCCAAGGCAGGAAAAAAGCAAACGTACAA
GAATCCCGAGTACTACAGCTATTATCGCTACTCGTACTACGAGCTGAAGA
CAATCGTGGATACCATTAAAAAGAAGCAATCATCTAAGAAGTAAAAGCTT
TCTAGACC

BS17392.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-PA 378 CG12464-RA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-RA 506 CG12464-RA 54..431 17..394 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13608748..13609125 394..17 1890 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:33:46 has no hits.

BS17392.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:00 Download gff for BS17392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12464-PA 1..378 17..394 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:52 Download gff for BS17392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..431 17..394 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:33:01 Download gff for BS17392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..431 17..394 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:33:01 Download gff for BS17392.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13608748..13609125 17..394 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:52 Download gff for BS17392.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9496253..9496630 17..394 100   Minus

BS17392.pep Sequence

Translation from 16 to 393

> BS17392.pep
MKYSPTMRAPLRIPLLWRPTFWRLKIAYGYSKDVNTLKRLGASPRNVRDH
PEGCTPQTLNTTAFTTPDFIHPSTYRIVDKKEQLGPKAGKKQTYKNPEYY
SYYRYSYYELKTIVDTIKKKQSSKK*

BS17392.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-PA 125 CG12464-PA 1..125 1..125 678 100 Plus
CG11815-PA 283 CG11815-PA 31..100 43..110 140 41.4 Plus