Clone Sequence Records
BS17392.complete Sequence
410 bp assembled on 2010-02-09
GenBank Submission: KX800602
> BS17392.complete
GAAGTTATCAGTCGACATGAAATACAGCCCCACCATGCGTGCTCCTTTAA
GAATTCCGCTTTTATGGCGCCCAACGTTTTGGCGCTTGAAGATCGCTTAT
GGTTACTCAAAGGATGTCAATACCCTCAAGCGTTTGGGCGCCAGTCCGCG
AAATGTACGCGATCACCCCGAAGGATGTACGCCCCAAACTTTGAACACAA
CTGCCTTCACTACTCCCGATTTCATACACCCATCCACCTATCGGATTGTG
GATAAAAAGGAGCAACTTGGACCCAAGGCAGGAAAAAAGCAAACGTACAA
GAATCCCGAGTACTACAGCTATTATCGCTACTCGTACTACGAGCTGAAGA
CAATCGTGGATACCATTAAAAAGAAGCAATCATCTAAGAAGTAAAAGCTT
TCTAGACCAT
BS17392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-RA | 378 | CG12464-PA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-RA | 506 | CG12464-RA | 54..431 | 17..394 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13608748..13609125 | 394..17 | 1890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:44:02 has no hits.
BS17392.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:45 Download gff for
BS17392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 1..378 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:18 Download gff for
BS17392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..429 | 17..392 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:55 Download gff for
BS17392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..429 | 17..392 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:45 Download gff for
BS17392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..431 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:46 Download gff for
BS17392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..429 | 17..392 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:46 Download gff for
BS17392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13608750..13609125 | 17..392 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:55 Download gff for
BS17392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9496255..9496630 | 17..392 | 100 | | Minus |
BS17392.3prime Sequence
408 bp (408 high quality bases) assembled on 2007-05-15
> BS17392.3prime
ATGGTCTAGAAAGCTTTTACTTCTTAGATGATTGCTTCTTTTTAATGGTA
TCCACGATTGTCTTCAGCTCGTAGTACGAGTAGCGATAATAGCTGTAGTA
CTCGGGATTCTTGTACGTTTGCTTTTTTCCTGCCTTGGGTCCAAGTTGCT
CCTTTTTATCCACAATCCGATAGGTGGATGGGTGTATGAAATCGGGAGTA
GTGAAGGCAGTTGTGTTCAAAGTTTGGGGCGTACATCCTTCGGGGTGATC
GCGTACATTTCGCGGACTGGCGCCCAAACGCTTGAGGGTATTGACATCCT
TTGAGTAACCATAAGCGATCTTCAAGCGCCAAAACGTTGGGCGCCATAAA
AGCGGAATTCTTAAAGGAGCACGCATGGTGGGGCTGTATTTCATGTCGAC
TGATAACT
BS17392.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-PA | 378 | CG12464-RA | 1..378 | 394..17 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-RA | 506 | CG12464-RA | 54..431 | 394..17 | 1890 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13608748..13609125 | 17..394 | 1890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:56:11 has no hits.
BS17392.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:34:25 Download gff for
BS17392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-PA | 1..378 | 17..394 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:31 Download gff for
BS17392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..431 | 17..394 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:18 Download gff for
BS17392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..431 | 17..394 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:18 Download gff for
BS17392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13608748..13609125 | 17..394 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:31 Download gff for
BS17392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9496253..9496630 | 17..394 | 100 | | Plus |
BS17392.5prime Sequence
408 bp (408 high quality bases) assembled on 2007-05-15
> BS17392.5prime
GAAGTTATCAGTCGACATGAAATACAGCCCCACCATGCGTGCTCCTTTAA
GAATTCCGCTTTTATGGCGCCCAACGTTTTGGCGCTTGAAGATCGCTTAT
GGTTACTCAAAGGATGTCAATACCCTCAAGCGTTTGGGCGCCAGTCCGCG
AAATGTACGCGATCACCCCGAAGGATGTACGCCCCAAACTTTGAACACAA
CTGCCTTCACTACTCCCGATTTCATACACCCATCCACCTATCGGATTGTG
GATAAAAAGGAGCAACTTGGACCCAAGGCAGGAAAAAAGCAAACGTACAA
GAATCCCGAGTACTACAGCTATTATCGCTACTCGTACTACGAGCTGAAGA
CAATCGTGGATACCATTAAAAAGAAGCAATCATCTAAGAAGTAAAAGCTT
TCTAGACC
BS17392.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-PA | 378 | CG12464-RA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-RA | 506 | CG12464-RA | 54..431 | 17..394 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13608748..13609125 | 394..17 | 1890 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:33:46 has no hits.
BS17392.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:27:00 Download gff for
BS17392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-PA | 1..378 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:52 Download gff for
BS17392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..431 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:33:01 Download gff for
BS17392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..431 | 17..394 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:33:01 Download gff for
BS17392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13608748..13609125 | 17..394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:52 Download gff for
BS17392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9496253..9496630 | 17..394 | 100 | | Minus |
BS17392.pep Sequence
Translation from 16 to 393
> BS17392.pep
MKYSPTMRAPLRIPLLWRPTFWRLKIAYGYSKDVNTLKRLGASPRNVRDH
PEGCTPQTLNTTAFTTPDFIHPSTYRIVDKKEQLGPKAGKKQTYKNPEYY
SYYRYSYYELKTIVDTIKKKQSSKK*
BS17392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-PA | 125 | CG12464-PA | 1..125 | 1..125 | 678 | 100 | Plus |
CG11815-PA | 283 | CG11815-PA | 31..100 | 43..110 | 140 | 41.4 | Plus |