Clone Sequence Records
BS17395.complete Sequence
566 bp assembled on 2010-02-09
GenBank Submission: KX806328
> BS17395.complete
GAAGTTATCAGTCGACATGGCTGATTTTCAAGAACAGCTGCGACAGTATC
GCGCTCAGAAAAGGAGAAAGGAAACGGTAGACAACTTCAAGGACAAACTA
CGGAGATTCTGGATGTTGGGAACCGGGGCTAATAAAGATACCACAATAGA
GGTACAACAGGTACCTACTAAGTTCGAAGCTATCTCGGAAAACTCACAAG
ATGAGGCTGTGACCTCCAGTGAAAGTGAATTGGTGCCAGAGGAGCAGCCC
ACCAGATCCACAGATCATCACCACAAGGAAAACAACTGCCTAAAGTACAC
CCTCTGGACTGTCTATCTGCTGTTCTGGATAACTCTCTACGTTATTGCCA
TAAAGCTAAGCTTTGGATTGGTTTTCCTCATGTTTTCCGCCCTCTTTGGC
ATCTACTTCAACACCCGAACGGAGCCAAAGAAACGGAACGAGATGAGTGC
CTACAGCGTTTTCAACAAGAATTGCGAGAGTATAGACGGCACCTTGAAGG
CCGAGCAGTTCGAAAGGGAAATCCGCTATGGATCCGGAAGTGTACGATAG
AAGCTTTCTAGACCAT
BS17395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-RA | 534 | CG13663-PA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-RA | 802 | CG13663-RA | 51..584 | 17..550 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25214543..25214934 | 550..159 | 1960 | 100 | Minus |
| 3R | 32079331 | 3R | 25214992..25215138 | 163..17 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:03:20 has no hits.
BS17395.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:20 Download gff for
BS17395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 1..534 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:29 Download gff for
BS17395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..584 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:57 Download gff for
BS17395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..584 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:20 Download gff for
BS17395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 17..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:37 Download gff for
BS17395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..584 | 17..550 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:37 Download gff for
BS17395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25214543..25214932 | 161..550 | 100 | <- | Minus |
| 3R | 25214995..25215138 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:57 Download gff for
BS17395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21040265..21040654 | 161..550 | 100 | <- | Minus |
| arm_3R | 21040717..21040860 | 17..160 | 100 | | Minus |
BS17395.3prime Sequence
564 bp (564 high quality bases) assembled on 2007-05-15
> BS17395.3prime
ATGGTCTAGAAAGCTTCTATCGTACACTTCCGGATCCATAGCGGATTTCC
CTTTCGAACTGCTCGGCCTTCAAGGTGCCGTCTATACTCTCGCAATTCTT
GTTGAAAACGCTGTAGGCACTCATCTCGTTCCGTTTCTTTGGCTCCGTTC
GGGTGTTGAAGTAGATGCCAAAGAGGGCGGAAAACATGAGGAAAACCAAT
CCAAAGCTTAGCTTTATGGCAATAACGTAGAGAGTTATCCAGAACAGCAG
ATAGACAGTCCAGAGGGTGTACTTTAGGCAGTTGTTTTCCTTGTGGTGAT
GATCTGTGGATCTGGTGGGCTGCTCCTCTGGCACCAATTCACTTTCACTG
GAGGTCACAGCCTCATCTTGTGAGTTTTCCGAGATAGCTTCGAACTTAGT
AGGTACCTGTTGTACCTCTATTGTGGTATCTTTATTAGCCCCGGTTCCCA
ACATCCAGAATCTCCGTAGTTTGTCCTTGAAGTTGTCTACCGTTTCCTTT
CTCCTTTTCTGAGCGCGATACTGTCGCAGCTGTTCTTGAAAATCAGCCAT
GTCGACTGATAACT
BS17395.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-PA | 534 | CG13663-RA | 1..534 | 550..17 | 2670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-RA | 802 | CG13663-RA | 51..584 | 550..17 | 2670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25214543..25214934 | 17..408 | 1960 | 100 | Plus |
| 3R | 32079331 | 3R | 25214992..25215138 | 404..550 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:12:21 has no hits.
BS17395.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:38:04 Download gff for
BS17395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-PA | 1..534 | 17..550 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:05 Download gff for
BS17395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 11..550 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:08 Download gff for
BS17395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 11..550 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:08 Download gff for
BS17395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25214539..25214932 | 11..406 | 99 | <- | Plus |
| 3R | 25214995..25215138 | 407..550 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:05 Download gff for
BS17395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21040261..21040654 | 11..406 | 99 | <- | Plus |
| arm_3R | 21040717..21040860 | 407..550 | 100 | | Plus |
BS17395.5prime Sequence
564 bp (564 high quality bases) assembled on 2007-05-15
> BS17395.5prime
GAAGTTATCAGTCGACATGGCTGATTTTCAAGAACAGCTGCGACAGTATC
GCGCTCAGAAAAGGAGAAAGGAAACGGTAGACAACTTCAAGGACAAACTA
CGGAGATTCTGGATGTTGGGAACCGGGGCTAATAAAGATACCACAATAGA
GGTACAACAGGTACCTACTAAGTTCGAAGCTATCTCGGAAAACTCACAAG
ATGAGGCTGTGACCTCCAGTGAAAGTGAATTGGTGCCAGAGGAGCAGCCC
ACCAGATCCACAGATCATCACCACAAGGAAAACAACTGCCTAAAGTACAC
CCTCTGGACTGTCTATCTGCTGTTCTGGATAACTCTCTACGTTATTGCCA
TAAAGCTAAGCTTTGGATTGGTTTTCCTCATGTTTTCCGCCCTCTTTGGC
ATCTACTTCAACACCCGAACGGAGCCAAAGAAACGGAACGAGATGAGTGC
CTACAGCGTTTTCAACAAGAATTGCGAGAGTATAGACGGCACCTTGAAGG
CCGAGCAGTTCGAAAGGGAAATCCGCTATGGATCCGGAAGTGTACGATAG
AAGCTTTCTAGACC
BS17395.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-PA | 534 | CG13663-RA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-RA | 802 | CG13663-RA | 51..584 | 17..550 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25214543..25214934 | 550..159 | 1960 | 100 | Minus |
| 3R | 32079331 | 3R | 25214992..25215138 | 163..17 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:19:09 has no hits.
BS17395.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:30:49 Download gff for
BS17395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-PA | 1..534 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:39 Download gff for
BS17395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 17..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:44:42 Download gff for
BS17395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 17..556 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:44:42 Download gff for
BS17395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25214539..25214932 | 161..556 | 99 | <- | Minus |
| 3R | 25214995..25215138 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:39 Download gff for
BS17395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21040261..21040654 | 161..556 | 99 | <- | Minus |
| arm_3R | 21040717..21040860 | 17..160 | 100 | | Minus |
BS17395.pep Sequence
Translation from 16 to 549
> BS17395.pep
MADFQEQLRQYRAQKRRKETVDNFKDKLRRFWMLGTGANKDTTIEVQQVP
TKFEAISENSQDEAVTSSESELVPEEQPTRSTDHHHKENNCLKYTLWTVY
LLFWITLYVIAIKLSFGLVFLMFSALFGIYFNTRTEPKKRNEMSAYSVFN
KNCESIDGTLKAEQFEREIRYGSGSVR*
BS17395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-PA | 177 | CG13663-PA | 1..177 | 1..177 | 923 | 100 | Plus |
