Clone Sequence Records
BS17407.complete Sequence
584 bp assembled on 2010-02-09
GenBank Submission: KX803127
> BS17407.complete
GAAGTTATCAGTCGACATGTTCCTGAATGCCCTGCGAAGGATGCGCTGCC
TGTGCGGCGACAGGGAGATCAGTACCGAAGACATTGAACAGAGGGAGCCG
GTAATGCTGAACATCTACGACCTGTCCACCAGCAACAACTACACTTTTCC
GCTGGGCTTGGGTGTCTTCCATTCCGGCGTCCAGTTGTACGGGCGAGAGT
ACGCATTTTTGGCGCTCAATCTCTCCATTTCCGGCATCTTTGAGATTCAT
CCCTGCAATGGGCAGGAGGAGTTGGGCGAACACTTCCGTTTCCGGAAGAG
CATTCTGCTCGGCTACACCGACTTTACCTGCGCTGAAGTGAAGCGCGTTA
TCAACCTGCTGGGCTTCGAGTTCCGCGGGACCAGCTACCACTTGACCAGC
AAGAATTGCAACCACTTCTCCAACTGCCTGGCGCATCTCGTCTGTGGCCG
TAAAATTCCGCGTTGGGTCAACCGCCTGGCCTACCTCATAACGTGTGTCC
CATTCCTCGAACGCTTTGTGGTCTCCAGTCCATCACATTACCCTCACTTC
CGTCAATTTCAGCTCTAAAAGCTTTCTAGACCAT
BS17407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-RA | 552 | CG12231-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-RA | 711 | CG12231-RA | 122..673 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19531070..19531621 | 568..17 | 2760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:11:00 has no hits.
BS17407.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:23 Download gff for
BS17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:12 Download gff for
BS17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 6..550 | 22..566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:31 Download gff for
BS17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 127..671 | 22..566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:24 Download gff for
BS17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 1..558 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:43 Download gff for
BS17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 127..671 | 22..566 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:43 Download gff for
BS17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19531072..19531616 | 22..566 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:31 Download gff for
BS17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19425105..19425649 | 22..566 | 100 | | Minus |
BS17407.3prime Sequence
582 bp (582 high quality bases) assembled on 2007-05-15
> BS17407.3prime
ATGGTCTAGAAAGCTTTTAGAGCTGAAATTGACGGAAGTGAGGGTAATGT
GATGGACTGGAGACCACAAAGCGTTCGAGGAATGGGACACACGTTATGAG
GTAGGCCAGGCGGTTGACCCAACGCGGAATTTTACGGCCACAGACGAGAT
GCGCCAGGCAGTTGGAGAAGTGGTTGCAATTCTTGCTGGTCAAGTGGTAG
CTGGTCCCGCGGAACTCGAAGCCCAGCAGGTTGATAACGCGCTTCACTTC
AGCGCAGGTAAAGTCGGTGTAGCCGAGCAGAATGCTCTTCCGGAAACGGA
AGTGTTCGCCCAACTCCTCCTGCCCATTGCAGGGATGAATCTCAAAGATG
CCGGAAATGGAGAGATTGAGCGCCAAAAATGCGTACTCTCGCCCGTACAA
CTGGACGCCGGAATGGAAGACACCCAAGCCCAGCGGAAAAGTGTAGTTGT
TGCTGGTGGACAGGTCGTAGATGTTCAGCATTACCGGCTCCCTCTGTTCA
ATGTCTTCGGTACTGATCTCCCTGTCGCCGCACAGGCAGCGCATCCTTCG
CAGGGCATTCAGGAACATGTCGACTGATAACT
BS17407.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:12:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-PA | 552 | CG12231-RA | 1..552 | 568..17 | 2760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-RA | 711 | CG12231-RA | 122..673 | 568..17 | 2760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19531070..19531621 | 17..568 | 2760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:23:09 has no hits.
BS17407.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:12:14 Download gff for
BS17407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-PA | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:36 Download gff for
BS17407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 117..677 | 11..574 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:52:41 Download gff for
BS17407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 117..677 | 11..574 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:52:41 Download gff for
BS17407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19531066..19531626 | 11..574 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:36 Download gff for
BS17407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19425099..19425659 | 11..574 | 98 | | Plus |
BS17407.5prime Sequence
582 bp (582 high quality bases) assembled on 2007-05-23
> BS17407.5prime
GAAGTTATCAGTCGACATGTTCCTGAATGCCCTGCGAAGGATGCGCTGCC
TGTGCGGCGACAGGGAGATCAGTACCGAAGACATTGAACAGAGGGAGCCG
GTAATGCTGAACATCTACGACCTGTCCACCAGCAACAACTACACTTTTCC
GCTGGGCTTGGGTGTCTTCCATTCCGGCGTCCAGTTGTACGGGCGAGAGT
ACGCATTTTTGGCGCTCAATCTCTCCATTTCCGGCATCTTTGAGATTCAT
CCCTGCAATGGGCAGGAGGAGTTGGGCGAACACTTCCGTTTCCGGAAGAG
CATTCTGCTCGGCTACACCGACTTTACCTGCGCTGAAGTGAAGCGCGTTA
TCAACCTGCTGGGCTTCGAGTTCCGCGGGACCAGCTACCACTTGACCAGC
AAGAATTGCAACCACTTCTCCAACTGCCTGGCGCATCTCGTCTGTGGCCG
TAAAATTCCGCGTTGGGTCAACCGCCTGGCCTACCTCATAACGTGTGTCC
CATTCCTCGAACGCTTTGTGGTCTCCAGTCCATCACATTACCCTCACTTC
CGTCAATTTCAGCTCTAAAAGCTTTCTAGACC
BS17407.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-PA | 552 | CG12231-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-RA | 711 | CG12231-RA | 122..673 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19531070..19531621 | 568..17 | 2760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:27:25 has no hits.
BS17407.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:10:55 Download gff for
BS17407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-PA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:01:50 Download gff for
BS17407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 1..558 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:37:41 Download gff for
BS17407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 117..677 | 11..574 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:00:50 Download gff for
BS17407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 117..677 | 11..574 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:00:50 Download gff for
BS17407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19531066..19531626 | 11..574 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:37:41 Download gff for
BS17407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19425099..19425659 | 11..574 | 98 | | Minus |
BS17407.pep Sequence
Translation from 16 to 567
> BS17407.pep
MFLNALRRMRCLCGDREISTEDIEQREPVMLNIYDLSTSNNYTFPLGLGV
FHSGVQLYGREYAFLALNLSISGIFEIHPCNGQEELGEHFRFRKSILLGY
TDFTCAEVKRVINLLGFEFRGTSYHLTSKNCNHFSNCLAHLVCGRKIPRW
VNRLAYLITCVPFLERFVVSSPSHYPHFRQFQL*
BS17407.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-PA | 183 | CG12231-PA | 1..183 | 1..183 | 987 | 100 | Plus |
| CG7222-PB | 205 | CG7222-PB | 24..175 | 14..166 | 426 | 50.3 | Plus |
| CG7222-PA | 205 | CG7222-PA | 24..175 | 14..166 | 426 | 50.3 | Plus |
