Clone BS17410 Report

Search the DGRC for BS17410

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:174
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG14757-RA
Protein status:BS17410.pep: full length peptide match
Sequenced Size:524

Clone Sequence Records

BS17410.complete Sequence

524 bp assembled on 2010-02-09

GenBank Submission: KX802549

> BS17410.complete
GAAGTTATCAGTCGACATGCTGCGCCAACTACGGTTGACAATGGATATTT
CGGGTTGGATCTTCCTCCCGTGGAGACGCTCCATGTCCAACATGAAGGAC
TCTCCTCCACCGCCACCACCACTGGCCAGCACTTTCAACGACGTGATTGT
GGACTACGAGGACCCGGATTATCTTCCACTGCCGGAGTATCCGGTGCGTC
CAAACGAGCCGTTGGAAACTCGCAAGCAACGGCTTTTGTACCAATCGCGC
AAGCGCGGAATGCTGGAGAACGATCTTCTGCTGAGCACCTTTGCGGCCAA
GCATCTCCAGAACTTCAGCGCCGAGCAGACGGCGCAGTACGACCAGTTGA
TCAACGGGGTCAGCAACGACTGGGATATCTATTACTGGGCCACCGAGGTG
AAGCCCACGCCCAAGGAGTACGACACGGAGATCATGGGGCTGTTGAAGGA
GCACGTCAAGAACGCCGAACGGGTCACGCGACTCCGCCAGCCGGATCTGA
ATATTTAGAAGCTTTCTAGACCAT

BS17410.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-RA 492 CG14757-PA 1..492 17..508 2460 100 Plus
CG12895-RB 471 CG12895-PB 115..365 146..396 565 81.7 Plus
CG12895-RA 471 CG12895-PA 115..365 146..396 565 81.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-RA 739 CG14757-RA 117..608 17..508 2460 100 Plus
CG12895-RB 667 CG12895-RB 160..410 146..396 565 81.7 Plus
CG12895-RA 593 CG12895-RA 160..410 146..396 565 81.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8172495..8172772 508..231 1390 100 Minus
2R 25286936 2R 8173172..8173370 232..34 995 100 Minus
2R 25286936 2R 10436855..10436997 396..254 415 86 Minus
Blast to na_te.dros performed 2014-11-28 03:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2226..2298 113..41 112 64.9 Minus

BS17410.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:25 Download gff for BS17410.complete
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 1..492 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:14 Download gff for BS17410.complete
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 117..608 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:33 Download gff for BS17410.complete
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 117..608 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:25 Download gff for BS17410.complete
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 113..610 9..512 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:46 Download gff for BS17410.complete
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 117..608 17..508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:46 Download gff for BS17410.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8173173..8173369 35..231 100 <- Minus
2R 8173480..8173497 17..34 100   Minus
2R 8172495..8172771 232..508 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:33 Download gff for BS17410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4060678..4060874 35..231 100 <- Minus
arm_2R 4060985..4061002 17..34 100   Minus
arm_2R 4060000..4060276 232..508 100 <- Minus

BS17410.5prime Sequence

522 bp (522 high quality bases) assembled on 2007-05-22

> BS17410.5prime
GAAGTTATCAGTCGACATGCTGCGCCAACTACGGTTGACAATGGATATTT
CGGGTTGGATCTTCCTCCCGTGGAGACGCTCCATGTCCAACATGAAGGAC
TCTCCTCCACCGCCACCACCACTGGCCAGCACTTTCAACGACGTGATTGT
GGACTACGAGGACCCGGATTATCTTCCACTGCCGGAGTATCCGGTGCGTC
CAAACGAGCCGTTGGAAACTCGCAAGCAACGGCTTTTGTACCAATCGCGC
AAGCGCGGAATGCTGGAGAACGATCTTCTGCTGAGCACCTTTGCGGCCAA
GCATCTCCAGAACTTCAGCGCCGAGCAGACGGCGCAGTACGACCAGTTGA
TCAACGGGGTCAGCAACGACTGGGATATCTATTACTGGGCCACCGAGGTG
AAGCCCACGCCCAAGGAGTACGACACGGAGATCATGGGGCTGTTGAAGGA
GCACGTCAAGAACGCCGAACGGGTCACGCGACTCCGCCAGCCGGATCTGA
ATATTTAGAAGCTTTCTAGACC

BS17410.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-PA 492 CG14757-RA 1..492 17..508 2460 100 Plus
CG12895-PA 471 CG12895-RA 289..347 320..378 145 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-RA 739 CG14757-RA 117..608 17..508 2460 100 Plus
CG12895-RB 667 CG12895-RB 160..410 146..396 565 82.1 Plus
CG12895-RA 593 CG12895-RA 160..410 146..396 565 82.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8172495..8172772 508..231 1390 100 Minus
2R 25286936 2R 8173172..8173370 232..34 995 100 Minus
2R 25286936 2R 10436855..10436997 396..254 415 86 Minus
Blast to na_te.dros performed 2015-02-11 22:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2226..2298 113..41 112 64.9 Minus

BS17410.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:30 Download gff for BS17410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14757-PA 1..492 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:01:53 Download gff for BS17410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 113..610 9..512 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 08:55:41 Download gff for BS17410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 113..610 9..512 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:22 Download gff for BS17410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 113..610 9..512 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:22 Download gff for BS17410.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8172493..8172771 232..512 99 <- Minus
2R 8173173..8173369 35..231 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 08:55:41 Download gff for BS17410.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4059998..4060276 232..512 99 <- Minus
arm_2R 4060678..4060874 35..231 100 <- Minus

BS17410.3prime Sequence

522 bp (522 high quality bases) assembled on 2007-05-15

> BS17410.3prime
ATGGTCTAGAAAGCTTCTAAATATTCAGATCCGGCTGGCGGAGTCGCGTG
ACCCGTTCGGCGTTCTTGACGTGCTCCTTCAACAGCCCCATGATCTCCGT
GTCGTACTCCTTGGGCGTGGGCTTCACCTCGGTGGCCCAGTAATAGATAT
CCCAGTCGTTGCTGACCCCGTTGATCAACTGGTCGTACTGCGCCGTCTGC
TCGGCGCTGAAGTTCTGGAGATGCTTGGCCGCAAAGGTGCTCAGCAGAAG
ATCGTTCTCCAGCATTCCGCGCTTGCGCGATTGGTACAAAAGCCGTTGCT
TGCGAGTTTCCAACGGCTCGTTTGGACGCACCGGATACTCCGGCAGTGGA
AGATAATCCGGGTCCTCGTAGTCCACAATCACGTCGTTGAAAGTGCTGGC
CAGTGGTGGTGGCGGTGGAGGAGAGTCCTTCATGTTGGACATGGAGCGTC
TCCACGGGAGGAAGATCCAACCCGAAATATCCATTGTCAACCGTAGTTGG
CGCAGCATGTCGACTGATAACT

BS17410.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-PA 492 CG14757-RA 1..492 508..17 2460 100 Minus
CG12895-PA 471 CG12895-RA 289..347 205..147 145 89.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-RA 739 CG14757-RA 117..608 508..17 2460 100 Minus
CG12895-RB 667 CG12895-RB 160..410 379..129 565 82.1 Minus
CG12895-RA 593 CG12895-RA 160..410 379..129 565 82.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8172495..8172772 17..294 1390 100 Plus
2R 25286936 2R 8173172..8173370 293..491 995 100 Plus
2R 25286936 2R 10436855..10436997 129..271 415 86 Plus
Blast to na_te.dros performed 2015-02-10 20:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2226..2298 412..484 112 64.9 Plus

BS17410.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:38:53 Download gff for BS17410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14757-PA 1..492 17..508 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:50 Download gff for BS17410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 113..610 13..516 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:38 Download gff for BS17410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 113..610 13..516 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:38 Download gff for BS17410.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8172493..8172771 13..293 99 <- Plus
2R 8173173..8173369 294..490 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:50 Download gff for BS17410.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4059998..4060276 13..293 99 <- Plus
arm_2R 4060678..4060874 294..490 100 <- Plus

BS17410.pep Sequence

Translation from 16 to 507

> BS17410.pep
MLRQLRLTMDISGWIFLPWRRSMSNMKDSPPPPPPLASTFNDVIVDYEDP
DYLPLPEYPVRPNEPLETRKQRLLYQSRKRGMLENDLLLSTFAAKHLQNF
SAEQTAQYDQLINGVSNDWDIYYWATEVKPTPKEYDTEIMGLLKEHVKNA
ERVTRLRQPDLNI*

BS17410.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-PA 163 CG14757-PA 1..163 1..163 872 100 Plus
CG12895-PB 156 CG12895-PB 39..156 44..161 536 82.2 Plus
CG12895-PA 156 CG12895-PA 39..156 44..161 536 82.2 Plus