Clone Sequence Records
BS17422.complete Sequence
512 bp assembled on 2010-02-09
GenBank Submission: KX802952
> BS17422.complete
GAAGTTATCAGTCGACATGAATTCGACAAAAGCTTTGTTAAGCAGCAGGA
TAGTGGCCTTCGGACTTGAAAATCTGGTGACGCGTCGCGGAATGAAGCAG
TTACGTTTGGATGAAATTCACTACAAACTCAACTCCAATCAAGAGCGAAA
CCACCAGAGAACTTGGCCACAATCACAGATGCAGCCGCAGATTGAGGAGC
GCATGGATGACACCAAATACAGGCCAGGTCGTTGGACGGAGCGGAAATAT
CAGGCCACCTGGCGGGAAGCTGTCATCCCAAATGAGGAAGCCCATAAGGA
GGCGAAGGACTCGCGTTCACAGGAGGAGCGACCCCACATTCGTGAACTCC
GCCGAACTACCGACCCCAATAGGCGCCTCCAGAGGATCGCAATGCCTGCT
AAACAATTCATCTCGCAGTTTATCTCCACCCAAAGCAAAAACAAAAGGCG
TTACGTAGAAGCTGCATCAGATCGAATGGCGTTTGATGGATACTAGAAGC
TTTCTAGACCAT
BS17422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18449-RA | 480 | CG18449-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18449-RA | 765 | CG18449-RA | 120..599 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8367329..8367808 | 496..17 | 2400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:11:10 has no hits.
BS17422.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:26 Download gff for
BS17422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18449-RA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:15 Download gff for
BS17422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18449-RA | 120..599 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:34 Download gff for
BS17422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18449-RA | 120..599 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:26 Download gff for
BS17422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18449-RA | 116..599 | 9..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:47 Download gff for
BS17422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18449-RA | 120..599 | 17..496 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:47 Download gff for
BS17422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8367329..8367808 | 17..496 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:34 Download gff for
BS17422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4254834..4255313 | 17..496 | 100 | | Minus |
BS17422.3prime Sequence
510 bp (510 high quality bases) assembled on 2007-05-15
> BS17422.3prime
ATGGTCTAGAAAGCTTCTAGTATCCATCAAACGCCATTCGATCTGATGCA
GCTTCTACGTAACGCCTTTTGTTTTTGCTTTGGGTGGAGATAAACTGCGA
GATGAATTGTTTAGCAGGCATTGCGATCCTCTGGAGGCGCCTATTGGGGT
CGGTAGTTCGGCGGAGTTCACGAATGTGGGGTCGCTCCTCCTGTGAACGC
GAGTCCTTCGCCTCCTTATGGGCTTCCTCATTTGGGATGACAGCTTCCCG
CCAGGTGGCCTGATATTTCCGCTCCGTCCAACGACCTGGCCTGTATTTGG
TGTCATCCATGCGCTCCTCAATCTGCGGCTGCATCTGTGATTGTGGCCAA
GTTCTCTGGTGGTTTCGCTCTTGATTGGAGTTGAGTTTGTAGTGAATTTC
ATCCAAACGTAACTGCTTCATTCCGCGACGCGTCACCAGATTTTCAAGTC
CGAAGGCCACTATCCTGCTGCTTAACAAAGCTTTTGTCGAATTCATGTCG
ACTGATAACT
BS17422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18449-PA | 480 | CG18449-RA | 1..480 | 496..17 | 2400 | 100 | Minus |
| CG18449-PB | 348 | CG18449-RB | 1..348 | 402..55 | 1740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18449-RA | 765 | CG18449-RA | 120..599 | 496..17 | 2400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8367329..8367808 | 17..496 | 2400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:26:22 has no hits.
BS17422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:39:09 Download gff for
BS17422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18449-PA | 1..480 | 17..496 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:10 Download gff for
BS17422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18449-RA | 116..599 | 17..504 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:58 Download gff for
BS17422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18449-RA | 116..599 | 17..504 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:58 Download gff for
BS17422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8367329..8367812 | 17..504 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:10 Download gff for
BS17422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4254834..4255317 | 17..504 | 99 | | Plus |
BS17422.5prime Sequence
510 bp (510 high quality bases) assembled on 2007-05-23
> BS17422.5prime
GAAGTTATCAGTCGACATGAATTCGACAAAAGCTTTGTTAAGCAGCAGGA
TAGTGGCCTTCGGACTTGAAAATCTGGTGACGCGTCGCGGAATGAAGCAG
TTACGTTTGGATGAAATTCACTACAAACTCAACTCCAATCAAGAGCGAAA
CCACCAGAGAACTTGGCCACAATCACAGATGCAGCCGCAGATTGAGGAGC
GCATGGATGACACCAAATACAGGCCAGGTCGTTGGACGGAGCGGAAATAT
CAGGCCACCTGGCGGGAAGCTGTCATCCCAAATGAGGAAGCCCATAAGGA
GGCGAAGGACTCGCGTTCACAGGAGGAGCGACCCCACATTCGTGAACTCC
GCCGAACTACCGACCCCAATAGGCGCCTCCAGAGGATCGCAATGCCTGCT
AAACAATTCATCTCGCAGTTTATCTCCACCCAAAGCAAAAACAAAAGGCG
TTACGTAGAAGCTGCATCAGATCGAATGGCGTTTGATGGATACTAGAAGC
TTTCTAGACC
BS17422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18449-PA | 480 | CG18449-RA | 1..218 | 17..234 | 1090 | 100 | Plus |
| CG18449-PB | 348 | CG18449-RB | 1..124 | 111..234 | 620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18449-RA | 765 | CG18449-RA | 120..599 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8367329..8367808 | 496..17 | 2400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:00:53 has no hits.
BS17422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:48 Download gff for
BS17422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18449-PA | 1..218 | 17..234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:02:04 Download gff for
BS17422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18449-RA | 116..599 | 9..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 20:15:27 Download gff for
BS17422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18449-RA | 116..599 | 9..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:14 Download gff for
BS17422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18449-RA | 116..599 | 9..496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:14 Download gff for
BS17422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8367329..8367812 | 9..496 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 20:15:27 Download gff for
BS17422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4254834..4255317 | 9..496 | 99 | | Minus |
BS17422.pep Sequence
Translation from 16 to 495
> BS17422.pep
MNSTKALLSSRIVAFGLENLVTRRGMKQLRLDEIHYKLNSNQERNHQRTW
PQSQMQPQIEERMDDTKYRPGRWTERKYQATWREAVIPNEEAHKEAKDSR
SQEERPHIRELRRTTDPNRRLQRIAMPAKQFISQFISTQSKNKRRYVEAA
SDRMAFDGY*
BS17422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18449-PA | 159 | CG18449-PA | 1..159 | 1..159 | 829 | 100 | Plus |
