Clone BS17424 Report

Search the DGRC for BS17424

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:174
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG6576-RA
Protein status:BS17424.pep: full length peptide match
Sequenced Size:836

Clone Sequence Records

BS17424.complete Sequence

836 bp assembled on 2010-02-09

GenBank Submission: KX804034

> BS17424.complete
GAAGTTATCAGTCGACATGACACGGCGTCGACGTCCACGATGTAAGGTGA
ATCCCTCGATAGCGCTGAGAAAGAAGAAACAGGAGACTGCACCCAGTGCA
GAAAAGGTAGAGCCACAACGTCCACCGCCCTTGCCGGATCCGCCCAGCGA
AGAGCCACCGGAAGTCGTCAGCACTTCGAGCGTAGAATCTGAAATCGAAT
CGGATTACAAACTCTTCCCGGAACTCTACGATCGCCAGCCGTCGATGCCC
ACGTTTGCTGATCTTTTTGGTCAGCCCTCTTATGAATCAGTGTTGCAGGA
GCCCGAGGTGGCATCTACCTCCTCCTCAACGAACACAAATGCCGCGGGAA
TACGTAGTACAGACGATGGGAAATTCACTAATATTCCGGCCACGATGCTG
TCAGATCAATTTGGGATCATTGGGCTGCTGGCCGCCATGAGGACTACGCA
AACGGATCCGGGCGCCACGCAGCTGGTCTTTGGTGAGGATCTAACCACCT
ACGGACTAGATTTGGCTGCCCAGGGAGACATTTATGTGCATTTCAATGGG
CCTCTAACCCGCGAACCACCTGACAGAAATTCCATGGACTGCGCCCTTGA
GATGGGAATGCGTGCCATGCGTGATTCGATTATCAATGAACCACCGAAGG
CTCCGTGTTGGGATCCATTTGAGCCAGAGACCCAAGATCTGGGACTTGTG
GGCAGTCTTGAACCGGATGAGTTTACGAAATCCGATCCAGATACGGAAAC
GGATCCACCGCCAACTACTGATTTGACTGAAGATCCGGAAACGGATCGAG
ATGATAATCAGTATAGATAAAAGCTTTCTAGACCAT

BS17424.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-RA 804 CG6576-PA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-RA 1179 CG6576-RA 195..998 17..820 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8756183..8756986 17..820 4020 100 Plus
Blast to na_te.dros performed 2014-11-28 03:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy4 6852 gypsy4 GYPSY4 6852bp 2638..2697 745..686 111 65 Minus

BS17424.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:27 Download gff for BS17424.complete
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:16 Download gff for BS17424.complete
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..996 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:35 Download gff for BS17424.complete
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..996 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:27 Download gff for BS17424.complete
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..1008 17..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:48 Download gff for BS17424.complete
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..996 17..818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:48 Download gff for BS17424.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8756183..8756984 17..818 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:35 Download gff for BS17424.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8749283..8750084 17..818 100   Plus

BS17424.3prime Sequence

834 bp (834 high quality bases) assembled on 2007-05-15

> BS17424.3prime
ATGGTCTAGAAAGCTTTTATCTATACTGATTATCATCTCGATCCGTTTCC
GGATCTTCAGTCAAATCAGTAGTTGGCGGTGGATCCGTTTCCGTATCTGG
ATCGGATTTCGTAAACTCATCCGGTTCAAGACTGCCCACAAGTCCCAGAT
CTTGGGTCTCTGGCTCAAATGGATCCCAACACGGAGCCTTCGGTGGTTCA
TTGATAATCGAATCACGCATGGCACGCATTCCCATCTCAAGGGCGCAGTC
CATGGAATTTCTGTCAGGTGGTTCGCGGGTTAGAGGCCCATTGAAATGCA
CATAAATGTCTCCCTGGGCAGCCAAATCTAGTCCGTAGGTGGTTAGATCC
TCACCAAAGACCAGCTGCGTGGCGCCCGGATCCGTTTGCGTAGTCCTCAT
GGCGGCCAGCAGCCCAATGATCCCAAATTGATCTGACAGCATCGTGGCCG
GAATATTAGTGAATTTCCCATCGTCTGTACTACGTATTCCCGCGGCATTT
GTGTTCGTTGAGGAGGAGGTAGATGCCACCTCGGGCTCCTGCAACACTGA
TTCATAAGAGGGCTGACCAAAAAGATCAGCAAACGTGGGCATCGACGGCT
GGCGATCGTAGAGTTCCGGGAAGAGTTTGTAATCCGATTCGATTTCAGAT
TCTACGCTCGAAGTGCTGACGACTTCCGGTGGCTCTTCGCTGGGCGGATC
CGGCAAGGGCGGTGGACGTTGTGGCTCTACCTTTTCTGCACTGGGTGCAG
TCTCCTGTTTCTTCTTTCTCAGCGCTATCGAGGGATTCACCTTACATCGT
GGACGTCGACGCCGTGTCATGTCGACTGATAACT

BS17424.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-PA 804 CG6576-RA 1..804 820..17 4020 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-RA 1179 CG6576-RA 195..998 820..17 4020 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8756183..8756986 820..17 4020 100 Minus
Blast to na_te.dros performed 2015-02-10 20:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy4 6852 gypsy4 GYPSY4 6852bp 2638..2697 92..151 111 65 Plus

BS17424.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:39:23 Download gff for BS17424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6576-PA 1..804 17..820 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:55 Download gff for BS17424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..1008 5..820 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:43 Download gff for BS17424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..1008 5..820 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:43 Download gff for BS17424.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8756183..8756996 5..820 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:55 Download gff for BS17424.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8749283..8750096 5..820 99   Minus

BS17424.5prime Sequence

815 bp (778 high quality bases) assembled on 2007-05-22

> BS17424.5prime
GAAGTTATCAGTCGACATGACACGGCGTCGACGTCCACGATGTAAGGTGA
ATCCCTCGATAGCGCTGAGAAAGAAGAAACAGGAGACTGCACCCAGTGCA
GAAAAGGTAGAGCCACAACGTCCACCGCCCTTGCCGGATCCGCCCAGCGA
AGAGCCACCGGAAGTCGTCAGCACTTCGAGCGTAGAATCTGAAATCGAAT
CGGATTACAAACTCTTCCCGGAACTCTACGATCGCCAGCCGTCGATGCCC
ACGTTTGCTGATCTTTTTGGTCAGCCCTCTTATGAATCAGTGTTGCAGGA
GCCCGAGGTGGCATCTACCTCCTCCTCAACGAACACAAATGCCGCGGGAA
TACGTAGTACAGACGATGGGAAATTCACTAATATTCCGGCCACGATGCTG
TCAGATCAATTTGGGATCATTGGGCTGCTGGCCGCCATGAGGACTACGCA
AACGGATCCGGGCGCCACGCAGCTGGTCTTTGGTGAGGATCTAACCACCT
ACGGACTAGATTTGGCTGCCCAGGGAGACATTTATGTGCATTTCAATGGG
CCTCTAACCCGCGAACCACCTGACAGAAATTCCATGGACTGCGCCCTTGA
GATGGGAATGCGTGCCATGCGTGATTCGATTATCAATGAACCACCGAAGG
CTCCGTGTTGGGATCCATTTGAGCCAGAGACCCAAGATCTGGGACTTGTG
GGCAGTCTTGAACCGGATGAGTTTACGAAATCCGATCCAGATACGGAAAC
GGATCCACCGCCAACTACTGATTTGACTGANGATCCGGAAACGGATCGAG
ATGATAATCAGTATA

BS17424.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-PA 804 CG6576-RA 1..799 17..815 3976 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-RA 1179 CG6576-RA 195..993 17..815 3984 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8756183..8756981 17..815 3984 99.9 Plus
Blast to na_te.dros performed 2015-02-11 02:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy4 6852 gypsy4 GYPSY4 6852bp 2638..2697 745..686 111 65 Minus

BS17424.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:52 Download gff for BS17424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6576-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:02:09 Download gff for BS17424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..992 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 16:55:45 Download gff for BS17424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..992 17..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:44 Download gff for BS17424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..992 17..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:44 Download gff for BS17424.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8756183..8756980 17..814 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 16:55:45 Download gff for BS17424.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8749283..8750080 17..814 99   Plus

BS17424.pep Sequence

Translation from 16 to 819

> BS17424.pep
MTRRRRPRCKVNPSIALRKKKQETAPSAEKVEPQRPPPLPDPPSEEPPEV
VSTSSVESEIESDYKLFPELYDRQPSMPTFADLFGQPSYESVLQEPEVAS
TSSSTNTNAAGIRSTDDGKFTNIPATMLSDQFGIIGLLAAMRTTQTDPGA
TQLVFGEDLTTYGLDLAAQGDIYVHFNGPLTREPPDRNSMDCALEMGMRA
MRDSIINEPPKAPCWDPFEPETQDLGLVGSLEPDEFTKSDPDTETDPPPT
TDLTEDPETDRDDNQYR*

BS17424.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-PA 267 CG6576-PA 1..267 1..267 1414 100 Plus
Rga-PC 579 CG2161-PC 368..450 102..184 190 43.4 Plus
Rga-PB 579 CG2161-PB 368..450 102..184 190 43.4 Plus
Rga-PA 585 CG2161-PA 374..456 102..184 190 43.4 Plus