Clone Sequence Records
BS17424.complete Sequence
836 bp assembled on 2010-02-09
GenBank Submission: KX804034
> BS17424.complete
GAAGTTATCAGTCGACATGACACGGCGTCGACGTCCACGATGTAAGGTGA
ATCCCTCGATAGCGCTGAGAAAGAAGAAACAGGAGACTGCACCCAGTGCA
GAAAAGGTAGAGCCACAACGTCCACCGCCCTTGCCGGATCCGCCCAGCGA
AGAGCCACCGGAAGTCGTCAGCACTTCGAGCGTAGAATCTGAAATCGAAT
CGGATTACAAACTCTTCCCGGAACTCTACGATCGCCAGCCGTCGATGCCC
ACGTTTGCTGATCTTTTTGGTCAGCCCTCTTATGAATCAGTGTTGCAGGA
GCCCGAGGTGGCATCTACCTCCTCCTCAACGAACACAAATGCCGCGGGAA
TACGTAGTACAGACGATGGGAAATTCACTAATATTCCGGCCACGATGCTG
TCAGATCAATTTGGGATCATTGGGCTGCTGGCCGCCATGAGGACTACGCA
AACGGATCCGGGCGCCACGCAGCTGGTCTTTGGTGAGGATCTAACCACCT
ACGGACTAGATTTGGCTGCCCAGGGAGACATTTATGTGCATTTCAATGGG
CCTCTAACCCGCGAACCACCTGACAGAAATTCCATGGACTGCGCCCTTGA
GATGGGAATGCGTGCCATGCGTGATTCGATTATCAATGAACCACCGAAGG
CTCCGTGTTGGGATCCATTTGAGCCAGAGACCCAAGATCTGGGACTTGTG
GGCAGTCTTGAACCGGATGAGTTTACGAAATCCGATCCAGATACGGAAAC
GGATCCACCGCCAACTACTGATTTGACTGAAGATCCGGAAACGGATCGAG
ATGATAATCAGTATAGATAAAAGCTTTCTAGACCAT
BS17424.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-RA | 804 | CG6576-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-RA | 1179 | CG6576-RA | 195..998 | 17..820 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8756183..8756986 | 17..820 | 4020 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:11:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 2638..2697 | 745..686 | 111 | 65 | Minus |
BS17424.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:27 Download gff for
BS17424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:16 Download gff for
BS17424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..996 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:35 Download gff for
BS17424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..996 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:27 Download gff for
BS17424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..1008 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:48 Download gff for
BS17424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..996 | 17..818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:48 Download gff for
BS17424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8756183..8756984 | 17..818 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:35 Download gff for
BS17424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8749283..8750084 | 17..818 | 100 | | Plus |
BS17424.3prime Sequence
834 bp (834 high quality bases) assembled on 2007-05-15
> BS17424.3prime
ATGGTCTAGAAAGCTTTTATCTATACTGATTATCATCTCGATCCGTTTCC
GGATCTTCAGTCAAATCAGTAGTTGGCGGTGGATCCGTTTCCGTATCTGG
ATCGGATTTCGTAAACTCATCCGGTTCAAGACTGCCCACAAGTCCCAGAT
CTTGGGTCTCTGGCTCAAATGGATCCCAACACGGAGCCTTCGGTGGTTCA
TTGATAATCGAATCACGCATGGCACGCATTCCCATCTCAAGGGCGCAGTC
CATGGAATTTCTGTCAGGTGGTTCGCGGGTTAGAGGCCCATTGAAATGCA
CATAAATGTCTCCCTGGGCAGCCAAATCTAGTCCGTAGGTGGTTAGATCC
TCACCAAAGACCAGCTGCGTGGCGCCCGGATCCGTTTGCGTAGTCCTCAT
GGCGGCCAGCAGCCCAATGATCCCAAATTGATCTGACAGCATCGTGGCCG
GAATATTAGTGAATTTCCCATCGTCTGTACTACGTATTCCCGCGGCATTT
GTGTTCGTTGAGGAGGAGGTAGATGCCACCTCGGGCTCCTGCAACACTGA
TTCATAAGAGGGCTGACCAAAAAGATCAGCAAACGTGGGCATCGACGGCT
GGCGATCGTAGAGTTCCGGGAAGAGTTTGTAATCCGATTCGATTTCAGAT
TCTACGCTCGAAGTGCTGACGACTTCCGGTGGCTCTTCGCTGGGCGGATC
CGGCAAGGGCGGTGGACGTTGTGGCTCTACCTTTTCTGCACTGGGTGCAG
TCTCCTGTTTCTTCTTTCTCAGCGCTATCGAGGGATTCACCTTACATCGT
GGACGTCGACGCCGTGTCATGTCGACTGATAACT
BS17424.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-PA | 804 | CG6576-RA | 1..804 | 820..17 | 4020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-RA | 1179 | CG6576-RA | 195..998 | 820..17 | 4020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8756183..8756986 | 820..17 | 4020 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 20:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 2638..2697 | 92..151 | 111 | 65 | Plus |
BS17424.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:39:23 Download gff for
BS17424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-PA | 1..804 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:55 Download gff for
BS17424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..1008 | 5..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:43 Download gff for
BS17424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..1008 | 5..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:43 Download gff for
BS17424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8756183..8756996 | 5..820 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:55 Download gff for
BS17424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8749283..8750096 | 5..820 | 99 | | Minus |
BS17424.5prime Sequence
815 bp (778 high quality bases) assembled on 2007-05-22
> BS17424.5prime
GAAGTTATCAGTCGACATGACACGGCGTCGACGTCCACGATGTAAGGTGA
ATCCCTCGATAGCGCTGAGAAAGAAGAAACAGGAGACTGCACCCAGTGCA
GAAAAGGTAGAGCCACAACGTCCACCGCCCTTGCCGGATCCGCCCAGCGA
AGAGCCACCGGAAGTCGTCAGCACTTCGAGCGTAGAATCTGAAATCGAAT
CGGATTACAAACTCTTCCCGGAACTCTACGATCGCCAGCCGTCGATGCCC
ACGTTTGCTGATCTTTTTGGTCAGCCCTCTTATGAATCAGTGTTGCAGGA
GCCCGAGGTGGCATCTACCTCCTCCTCAACGAACACAAATGCCGCGGGAA
TACGTAGTACAGACGATGGGAAATTCACTAATATTCCGGCCACGATGCTG
TCAGATCAATTTGGGATCATTGGGCTGCTGGCCGCCATGAGGACTACGCA
AACGGATCCGGGCGCCACGCAGCTGGTCTTTGGTGAGGATCTAACCACCT
ACGGACTAGATTTGGCTGCCCAGGGAGACATTTATGTGCATTTCAATGGG
CCTCTAACCCGCGAACCACCTGACAGAAATTCCATGGACTGCGCCCTTGA
GATGGGAATGCGTGCCATGCGTGATTCGATTATCAATGAACCACCGAAGG
CTCCGTGTTGGGATCCATTTGAGCCAGAGACCCAAGATCTGGGACTTGTG
GGCAGTCTTGAACCGGATGAGTTTACGAAATCCGATCCAGATACGGAAAC
GGATCCACCGCCAACTACTGATTTGACTGANGATCCGGAAACGGATCGAG
ATGATAATCAGTATA
BS17424.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-PA | 804 | CG6576-RA | 1..799 | 17..815 | 3976 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-RA | 1179 | CG6576-RA | 195..993 | 17..815 | 3984 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:04:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8756183..8756981 | 17..815 | 3984 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-11 02:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 2638..2697 | 745..686 | 111 | 65 | Minus |
BS17424.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:52 Download gff for
BS17424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:02:09 Download gff for
BS17424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..992 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 16:55:45 Download gff for
BS17424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..992 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:44 Download gff for
BS17424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..992 | 17..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:44 Download gff for
BS17424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8756183..8756980 | 17..814 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 16:55:45 Download gff for
BS17424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8749283..8750080 | 17..814 | 99 | | Plus |
BS17424.pep Sequence
Translation from 16 to 819
> BS17424.pep
MTRRRRPRCKVNPSIALRKKKQETAPSAEKVEPQRPPPLPDPPSEEPPEV
VSTSSVESEIESDYKLFPELYDRQPSMPTFADLFGQPSYESVLQEPEVAS
TSSSTNTNAAGIRSTDDGKFTNIPATMLSDQFGIIGLLAAMRTTQTDPGA
TQLVFGEDLTTYGLDLAAQGDIYVHFNGPLTREPPDRNSMDCALEMGMRA
MRDSIINEPPKAPCWDPFEPETQDLGLVGSLEPDEFTKSDPDTETDPPPT
TDLTEDPETDRDDNQYR*
BS17424.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-PA | 267 | CG6576-PA | 1..267 | 1..267 | 1414 | 100 | Plus |
Rga-PC | 579 | CG2161-PC | 368..450 | 102..184 | 190 | 43.4 | Plus |
Rga-PB | 579 | CG2161-PB | 368..450 | 102..184 | 190 | 43.4 | Plus |
Rga-PA | 585 | CG2161-PA | 374..456 | 102..184 | 190 | 43.4 | Plus |