Clone Sequence Records
BS17427.complete Sequence
926 bp assembled on 2010-02-09
GenBank Submission: KX804572
> BS17427.complete
GAAGTTATCAGTCGACATGGCAGAAGCGGCAAATGTGCGCCAGAACCTTC
AAAATGTGCCGTCGATCTTCGAAATTTCAGCGTCAGAGACGCTGGACAAC
CTGATTTACCCGGCACTGAGCAAGATATTCGACTACTTTGGACTACGCCT
GGACTTTAAACTATGGGGGAGTTTGAGGATTCAGGAGGAGCTGTCGCCAT
TGCTGACTTGGCTGCTGCAGTACCTGTATCTGCGCAAGAGGGCCTCCTCT
TTCGGTGAGAGCTTTTACGGATTGCAAAGGACGGTCACAACCACTGGGGA
TCTGCTGAACCGCAGGCAGCAGTTCGCCTCTGCCACACTGCTAACCTTCA
TGCCTTACGTGGAGCGGAAGCTAAGGACCAGGATCACCAGGCACGAGGAC
ACCAGTCCCTGGGAGCAACGCCTTCTAAGCGCATTCCATGCTTTCCATGC
CGCCAAGGCGGCGCACACATTCTTTTACCTCGTAAAGTACGCCTCAAACC
ACTCGCCCATCTTCAGATTGTTGGGGCTGACCCTTCGCTATCCCAGCGAA
CCTCCCAAAGAGGATCAGTGGACCTACGTGGTCCTAAAGATGCTGGAGGT
CTTGGCCTTCTTCCTGCAGTTCGTCCAGTGGTGGTACTCCAACGACCAGC
GGCGGAAAGTGGGTGGAACTCTGATAAATCCCGAAGCGATGCCGAGAAAG
CAGCTGCCCAAGGAAGTGCAGCAGAGCCTTCCCCAGCGGGGAGAGTGCCC
AGTCTGCCTGCTGTCCATCCAGACGCCCACTGCCTGCTCCGTTTCCGGCT
ACGTCTTTTGCTGGAAGTGCATCGTTAGCCACATGAAGGAGCACGGCACC
TGCCCGGTCACCCACTATCCCATCAGTCTGGACGACCTGGTGCGCATCTA
CGAGACGTAAAAGCTTTCTAGACCAT
BS17427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex12-RB | 894 | CG3639-PB | 1..894 | 17..910 | 4470 | 100 | Plus |
| Pex12-RA | 894 | CG3639-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex12-RB | 2104 | CG3639-RB | 91..984 | 17..910 | 4470 | 100 | Plus |
| Pex12-RA | 1040 | CG3639-RA | 91..984 | 17..910 | 4470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 816083..816976 | 17..910 | 4470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:11:19 has no hits.
BS17427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:28 Download gff for
BS17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3639-RA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:18 Download gff for
BS17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3639-RA | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:38 Download gff for
BS17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex12-RA | 91..982 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:29 Download gff for
BS17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3639-RA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:49 Download gff for
BS17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex12-RA | 91..982 | 17..908 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:49 Download gff for
BS17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 816083..816974 | 17..908 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:38 Download gff for
BS17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 816083..816974 | 17..908 | 100 | | Plus |
BS17427.3prime Sequence
742 bp (741 high quality bases) assembled on 2007-05-15
> BS17427.3prime
ATGGTCTAGAAAGCTTTTACGTCTCGTAGATGCGCACCAGGTCGTCCAGA
CTGATGGGATAGTGGGTGACCGGGCAGGTGCCGTGCTCCTTCATGTGGCT
AACGATGCACTTCCAGCAAAAGACGTAGCCGGAAACGGAGCAGGCAGTGG
GCGTCTGGATGGACAGCAGGCAGACTGGGCACTCTCCCCGCTGGGGAAGG
CTCTGCTGCACTTCCTTGGGCAGCTGCTTTCTCGGCATCGCTTCGGGATT
TATCAGAGTTCCACCCACTTTCCGCCGCTGGTCGTTGGAGTACCACCACT
GGACGAACTGCAGGAAGAAGGCCAAGACCTCCAGCATCTTTAGGACCACG
TAGGTCCACTGATCCTCTTTGGGAGGTTCGCTGGGATAGCGAAGGGTCAG
CCCCAACAATCTGAAGATGGGCGAGTGGTTTGAGGCGTACTTTACGAGGT
AAAAGAATGTGTGCGCCGCCTTGGCGGCATGGAAAGCATGGAATGCGCTT
AGAAGGCGTTGCTCCCAGGGACTGGTGTCCTCGTGCCTGGTGATCCTGGT
CCTTAGCTTCCGCTCCACGTAAGGCATGAAGGTTAGCAGTGTGGCAGAGG
CGAACTGCTGCCTGCGGTTCAGCAGATCCCCAGTGGTTGTGACCGTCCTT
TGCAATCCGTAAAAGCTCTCACCGAAAGAGGAGGCCCTCTTGCGCAGATA
CAGGTACTGCAGCAGCCAAGTCAGCAATGGCGACAGCTCCTC
BS17427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3639-PA | 894 | CG3639-RA | 169..894 | 742..17 | 3630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex12-RB | 2104 | CG3639-RB | 259..984 | 742..17 | 3630 | 100 | Minus |
| Pex12-RA | 1040 | CG3639-RA | 259..984 | 742..17 | 3630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 816251..816976 | 742..17 | 3630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:50:10 has no hits.
BS17427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:14:55 Download gff for
BS17427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3639-PA | 169..894 | 17..742 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:19 Download gff for
BS17427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex12-RA | 259..988 | 11..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:55 Download gff for
BS17427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex12-RA | 259..988 | 11..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:55 Download gff for
BS17427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 816251..816980 | 11..742 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:19 Download gff for
BS17427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 816251..816980 | 11..742 | 99 | | Minus |
BS17427.5prime Sequence
852 bp (812 high quality bases) assembled on 2007-05-22
> BS17427.5prime
GAAGTTATCAGTCGACATGGCAGAAGCGGCAAATGTGCGCCAGAACCTTC
AAAATGTGCCGTCGATCTTCGAAATTTCAGCGTCAGAGACGCTGGACAAC
CTGATTTACCCGGCACTGAGCAAGATATTCGACTACTTTGGACTACGCCT
GGACTTTAAACTATGGGGGAGTTTGAGGATTCAGGAGGAGCTGTCGCCAT
TGCTGACTTGGCTGCTGCAGTACCTGTATCTGCGCAAGAGGGCCTCCTCT
TTCGGTGAGAGCTTTTACGGATTGCAAAGGACGGTCACAACCACTGGGGA
TCTGCTGAACCGCAGGCAGCAGTTCGCCTCTGCCACACTGCTAACCTTCA
TGCCTTACGTGGAGCGGAAGCTAAGGACCAGGATCACCAGGCACGAGGAC
ACCAGTCCCTGGGAGCAACGCCTTCTAAGCGCATTCCATGCTTTCCATGC
CGCCAAGGCGGCGCACACATTCTTTTACCTCGTAAAGTACGCCTCAAACC
ACTCGCCCATCTTCAGATTGTTGGGGCTGACCCTTCGCTATCCCAGCGAA
CCTCCCAAAGAGGATCAGTGGACCTACGTGGTCCTAAAGATGCTGGAGGT
CTTGGCCTTCTTCCTGCAGTTCGTCCAGTGGTGGTACTCCAACGACCAGC
GGCGGAAAGTGGGTGGAACTCTGATAAATCCCGAAGCGATGCCGAGAAAG
CAGCTGCCCAAGGAAGTGCAGCAGAGCCTTCCCCAGCGGGGAGAGTGCCC
AGTCTGCCTGCTGTCCATCCAGACGCCCACTGCCTGCTCCGTTTCCGGCT
ACGTCTTTTGCTGGAAGTGCATCGTTAGCCACATGAAAGAGCACGGCACC
TG
BS17427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3639-PA | 894 | CG3639-RA | 1..836 | 17..852 | 4155 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex12-RB | 2104 | CG3639-RB | 91..926 | 17..852 | 4165 | 99.9 | Plus |
| Pex12-RA | 1040 | CG3639-RA | 91..926 | 17..852 | 4165 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 816083..816918 | 17..852 | 4165 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:08:53 has no hits.
BS17427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:04 Download gff for
BS17427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3639-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:02:14 Download gff for
BS17427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3639-RA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 09:54:29 Download gff for
BS17427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex12-RA | 87..926 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:45 Download gff for
BS17427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex12-RA | 87..926 | 9..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:45 Download gff for
BS17427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 816079..816918 | 9..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 09:54:29 Download gff for
BS17427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 816079..816918 | 9..852 | 99 | | Plus |
BS17427.pep Sequence
Translation from 16 to 909
> BS17427.pep
MAEAANVRQNLQNVPSIFEISASETLDNLIYPALSKIFDYFGLRLDFKLW
GSLRIQEELSPLLTWLLQYLYLRKRASSFGESFYGLQRTVTTTGDLLNRR
QQFASATLLTFMPYVERKLRTRITRHEDTSPWEQRLLSAFHAFHAAKAAH
TFFYLVKYASNHSPIFRLLGLTLRYPSEPPKEDQWTYVVLKMLEVLAFFL
QFVQWWYSNDQRRKVGGTLINPEAMPRKQLPKEVQQSLPQRGECPVCLLS
IQTPTACSVSGYVFCWKCIVSHMKEHGTCPVTHYPISLDDLVRIYET*
BS17427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex12-PB | 297 | CG3639-PB | 1..297 | 1..297 | 1574 | 100 | Plus |
| Pex12-PA | 297 | CG3639-PA | 1..297 | 1..297 | 1574 | 100 | Plus |
