Clone BS17437 Report

Search the DGRC for BS17437

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:174
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG12917-RB
Protein status:BS17437.pep: full length peptide match
Sequenced Size:1103

Clone Sequence Records

BS17437.3prime Sequence

859 bp (759 high quality bases) assembled on 2007-05-15

> BS17437.3prime
ATGGTCTAGAAAGCTTTTCCTATGGGAACCGCTTGGGATCGCAACAGAAG
GTGTAGCCATCGTTCGGGTTATTCGGGAGGTGAATGGGACAATTAACTGG
GTAACAAATAGCCAGACACGGGGGCTTCTCCATTTGGAAGGTACTATTGT
AAGTGAGGAATACGTACAGCCCATTGCCGGTGGCATCCCGTACCGCTTTG
TAGGTCCACTCGGGAACCGGGATCTTGGAGCCGGCGAGGAAAGCCGACTG
AAGGAAGCCCCTGGTGTCTGGCAATGTCAAGATGCCAATTCCGCCGGACT
TGACCCGGAAATAGGACGACTTCGGGATCTGACTGCGCACCCATCTCTCA
ATTTTCTCCCAATTGCCATCGTTAATTGACTTGAATTGCGGCACCACATT
CAGATAGCGGAAAGTACTGCCCATCTGGTCCGTGAACAGGAAGTCCGCGG
AAGCCACCATATGTCCTCGATTAATCACCAAGTAGTTGGCATTTTGCAAG
TAGGACTGGTCATCACCGTAAATGCATTTGAACGCAAAATAGATGTTGGA
CTTCATGTAGGCAGCAGCCTCCTGCGGACTGAACATCTCATCCGCCACAA
ACTCCACAAATGGCCGCTTCGGAAAAAACGTTTTGTAGTAGACATCGCTC
TGCGAGTACACGAGTCTTCCCTGCCCGCAATCGAAACATGTGCGATACAG
CTCCAGATCCTTGCCATCTATGGTATATCCCACGGCATACAGGTTCCCCG
CACAATCCCCATCGCGAATATGCTTGGTCACCGGTTGCATTGGACTTAAA
CAGCGCATGGGCAGTGGGACCGAAAACTGTCCATTGTCCTGGCAAACAAT
TTCTTTGAA

BS17437.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12917-PA 963 CG12917-RA 121..959 859..21 4145 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12917-RB 1490 CG12917-RB 380..1218 859..21 4165 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10138392..10138995 624..21 3020 100 Minus
2R 25286936 2R 10138099..10138333 859..625 1145 99.1 Minus
Blast to na_te.dros performed on 2015-02-10 15:56:22 has no hits.

BS17437.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:07 Download gff for BS17437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12917-PA 123..963 17..857 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:34:56 Download gff for BS17437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12917-RB 380..1223 16..859 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:11 Download gff for BS17437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12917-RB 380..1223 16..859 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:11 Download gff for BS17437.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10138099..10138333 625..859 99 -> Minus
2R 10138392..10139000 16..624 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:34:56 Download gff for BS17437.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6025604..6025838 625..859 99 -> Minus
arm_2R 6025897..6026505 16..624 99   Minus

BS17437.5prime Sequence

854 bp (745 high quality bases) assembled on 2007-05-23

> BS17437.5prime
GAAGTTATCAGTCGACATGAAAATTGCTCCTATGGATTGCTCCTATATCA
CATTATTTATTTACATATATTTCATATGCTTTCTGGCTTGGGAAGTGCAC
GGCGATTGTCAAATTTTACAATATATGGTAGAGCAATCCAATGGAATTTT
CACCTATCGCGATGCGAGCGGATCTATCCAGCTGCAGCGCTTGGAAACAG
TTCCATCCGGTGTCACTCTACTCGTGTACTGCAGTCCCTCGGTTTTCAAA
GAAACTGTTTGCCAGGACAATGGACAGTTCTCGGTCCCACTGCCCATGCG
CTGTTTAAGTCCAATGCAACCGGTGACCAAGCATATTCGCGATGGGGATT
GTGCGGGGAACCTGTATGCCGTGGGATATACCATAGATGGCAAGGATCTG
GAGCTGTATCGCACATGTTTCGATTGCGGGCAGGGAAGACTCGTGTACTC
GCAGAGCGATGTCTACTACAAAACGTTTTTTCCGAAGCGGCCATTTGTGG
AGTTTGTGGCGGATGAGATGTTCAGTCCGCAGGAGGCTGCTGCCTACATG
AAGTCCAACATCTATTTTGCGTTCAAATGCATTTACGGTGATGACCAGTC
CTACTTGCAAAATGCCAACTACTTGGTGATTAATCGAGGACATATGGTGG
CTTCCGCGGACTTCCTGTTCACGGACCAGATGGGCAGTACTTTCCGCTAT
CTGAATGTGGTGCCGCAATTCAAGTCAATTAACGATGGCAATTGGGAGAA
AATTGAGAGATGGGTGCGCAGTCAGATCCCGAAGTCGTCCTATTTCCGGG
TCAAGTCCGGCGGAATTGGCATCTTGACATTGCCAGACACCAGGGGCCTT
CCTT

BS17437.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12917-PA 963 CG12917-RA 1..709 125..833 3545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12917-RB 1490 CG12917-RB 152..988 17..854 4165 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10137940..10138333 86..479 1970 100 Plus
2R 25286936 2R 10138392..10138759 480..847 1840 100 Plus
2R 25286936 2R 10137807..10137876 17..86 350 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:22:08 has no hits.

BS17437.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:08 Download gff for BS17437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12917-PA 1..709 125..833 100   Plus
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:02:17 Download gff for BS17437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12917-RA 1..729 125..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 18:47:22 Download gff for BS17437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12917-RB 145..988 7..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:21:59 Download gff for BS17437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12917-RB 145..988 7..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:21:59 Download gff for BS17437.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10138392..10138765 480..854 99   Plus
2R 10137804..10137876 14..86 97 -> Plus
2R 10137941..10138333 87..479 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 18:47:22 Download gff for BS17437.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6025309..6025381 14..86 97 -> Plus
arm_2R 6025446..6025838 87..479 100 -> Plus
arm_2R 6025897..6026270 480..854 99   Plus

BS17437.complete Sequence

1103 bp assembled on 2010-02-09

GenBank Submission: KX800956

> BS17437.complete
GAAGTTATCAGTCGACATGAAAATTGCTCCTATGGATTGCTCCTATATCA
CATTATTTATTTACATATATTTCATATGCTTTCTGGCTTGGGAAGTGCAC
GGCGATTGTCAAATTTTACAATATATGGTAGAGCAATCCAATGGAATTTT
CACCTATCGCGATGCGAGCGGATCTATCCAGCTGCAGCGCTTGGAAACAG
TTCCATCCGGTGTCACTCTACTCGTGTACTGCAGTCCCTCGGTTTTCAAA
GAAACTGTTTGCCAGGACAATGGACAGTTCTCGGTCCCACTGCCCATGCG
CTGTTTAAGTCCAATGCAACCGGTGACCAAGCATATTCGCGATGGGGATT
GTGCGGGGAACCTGTATGCCGTGGGATATACCATAGATGGCAAGGATCTG
GAGCTGTATCGCACATGTTTCGATTGCGGGCAGGGAAGACTCGTGTACTC
GCAGAGCGATGTCTACTACAAAACGTTTTTTCCGAAGCGGCCATTTGTGG
AGTTTGTGGCGGATGAGATGTTCAGTCCGCAGGAGGCTGCTGCCTACATG
AAGTCCAACATCTATTTTGCGTTCAAATGCATTTACGGTGATGACCAGTC
CTACTTGCAAAATGCCAACTACTTGGTGATTAATCGAGGACATATGGTGG
CTTCCGCGGACTTCCTGTTCACGGACCAGATGGGCAGTACTTTCCGCTAT
CTGAATGTGGTGCCGCAATTCAAGTCAATTAACGATGGCAATTGGGAGAA
AATTGAGAGATGGGTGCGCAGTCAGATCCCGAAGTCGTCCTATTTCCGGG
TCAAGTCCGGCGGAATTGGCATCTTGACATTGCCAGACACCAGGGGCTTC
CTTCAGTCGGCTTTCCTCGCCGGCTCCAAGATCCCGGTTCCCGAGTGGAC
CTACAAAGCGGTACGGGATGCCACCGGCAATGGGCTGTACGTATTCCTCA
CTTACAATAGTACCTTCCAAATGGAGAAGCCCCCGTGTCTGGCTATTTGT
TACCCAGTTAATTGTCCCATTCACCTCCCGAATAACCCGAACGATGGCTA
CACCTTCTGTTGCGATCCCAAGCGGTTCCCATATTAAAAGCTTTCTAGAC
CAT

BS17437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12917-RB 1071 CG12917-PB 1..1071 17..1087 5355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12917-RB 1490 CG12917-RB 152..1223 17..1088 5360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10138392..10139000 480..1088 3045 100 Plus
2R 25286936 2R 10137940..10138333 86..479 1970 100 Plus
2R 25286936 2R 10137807..10137876 17..86 350 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:09:10 has no hits.

BS17437.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:02 Download gff for BS17437.complete
Subject Subject Range Query Range Percent Splice Strand
CG12917-RB 152..1220 17..1085 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:13 Download gff for BS17437.complete
Subject Subject Range Query Range Percent Splice Strand
CG12917-RB 152..1220 17..1085 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:34 Download gff for BS17437.complete
Subject Subject Range Query Range Percent Splice Strand
CG12917-RB 152..1220 17..1085 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:02 Download gff for BS17437.complete
Subject Subject Range Query Range Percent Splice Strand
CG12917-RB 152..1220 17..1085 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:02 Download gff for BS17437.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10137807..10137876 17..86 100 -> Plus
2R 10137941..10138333 87..479 100 -> Plus
2R 10138392..10138997 480..1085 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:13 Download gff for BS17437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6025312..6025381 17..86 100 -> Plus
arm_2R 6025446..6025838 87..479 100 -> Plus
arm_2R 6025897..6026502 480..1085 100   Plus

BS17437.pep Sequence

Translation from 16 to 1086

> BS17437.pep
MKIAPMDCSYITLFIYIYFICFLAWEVHGDCQILQYMVEQSNGIFTYRDA
SGSIQLQRLETVPSGVTLLVYCSPSVFKETVCQDNGQFSVPLPMRCLSPM
QPVTKHIRDGDCAGNLYAVGYTIDGKDLELYRTCFDCGQGRLVYSQSDVY
YKTFFPKRPFVEFVADEMFSPQEAAAYMKSNIYFAFKCIYGDDQSYLQNA
NYLVINRGHMVASADFLFTDQMGSTFRYLNVVPQFKSINDGNWEKIERWV
RSQIPKSSYFRVKSGGIGILTLPDTRGFLQSAFLAGSKIPVPEWTYKAVR
DATGNGLYVFLTYNSTFQMEKPPCLAICYPVNCPIHLPNNPNDGYTFCCD
PKRFPY*

BS17437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12917-PB 356 CG12917-PB 1..356 1..356 1944 100 Plus
CG14062-PB 346 CG14062-PB 2..344 11..354 692 38.6 Plus
CG33346-PB 364 CG33346-PB 61..345 66..354 467 35.5 Plus
CG9989-PA 370 CG9989-PA 3..358 7..354 335 27.6 Plus
CG14120-PA 1371 CG14120-PA 134..406 102..354 195 25.3 Plus