Clone Sequence Records
BS17437.3prime Sequence
859 bp (759 high quality bases) assembled on 2007-05-15
> BS17437.3prime
ATGGTCTAGAAAGCTTTTCCTATGGGAACCGCTTGGGATCGCAACAGAAG
GTGTAGCCATCGTTCGGGTTATTCGGGAGGTGAATGGGACAATTAACTGG
GTAACAAATAGCCAGACACGGGGGCTTCTCCATTTGGAAGGTACTATTGT
AAGTGAGGAATACGTACAGCCCATTGCCGGTGGCATCCCGTACCGCTTTG
TAGGTCCACTCGGGAACCGGGATCTTGGAGCCGGCGAGGAAAGCCGACTG
AAGGAAGCCCCTGGTGTCTGGCAATGTCAAGATGCCAATTCCGCCGGACT
TGACCCGGAAATAGGACGACTTCGGGATCTGACTGCGCACCCATCTCTCA
ATTTTCTCCCAATTGCCATCGTTAATTGACTTGAATTGCGGCACCACATT
CAGATAGCGGAAAGTACTGCCCATCTGGTCCGTGAACAGGAAGTCCGCGG
AAGCCACCATATGTCCTCGATTAATCACCAAGTAGTTGGCATTTTGCAAG
TAGGACTGGTCATCACCGTAAATGCATTTGAACGCAAAATAGATGTTGGA
CTTCATGTAGGCAGCAGCCTCCTGCGGACTGAACATCTCATCCGCCACAA
ACTCCACAAATGGCCGCTTCGGAAAAAACGTTTTGTAGTAGACATCGCTC
TGCGAGTACACGAGTCTTCCCTGCCCGCAATCGAAACATGTGCGATACAG
CTCCAGATCCTTGCCATCTATGGTATATCCCACGGCATACAGGTTCCCCG
CACAATCCCCATCGCGAATATGCTTGGTCACCGGTTGCATTGGACTTAAA
CAGCGCATGGGCAGTGGGACCGAAAACTGTCCATTGTCCTGGCAAACAAT
TTCTTTGAA
BS17437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12917-PA | 963 | CG12917-RA | 121..959 | 859..21 | 4145 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12917-RB | 1490 | CG12917-RB | 380..1218 | 859..21 | 4165 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10138392..10138995 | 624..21 | 3020 | 100 | Minus |
2R | 25286936 | 2R | 10138099..10138333 | 859..625 | 1145 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:56:22 has no hits.
BS17437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:07 Download gff for
BS17437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12917-PA | 123..963 | 17..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:34:56 Download gff for
BS17437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12917-RB | 380..1223 | 16..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:11 Download gff for
BS17437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12917-RB | 380..1223 | 16..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:11 Download gff for
BS17437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10138099..10138333 | 625..859 | 99 | -> | Minus |
2R | 10138392..10139000 | 16..624 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:34:56 Download gff for
BS17437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6025604..6025838 | 625..859 | 99 | -> | Minus |
arm_2R | 6025897..6026505 | 16..624 | 99 | | Minus |
BS17437.5prime Sequence
854 bp (745 high quality bases) assembled on 2007-05-23
> BS17437.5prime
GAAGTTATCAGTCGACATGAAAATTGCTCCTATGGATTGCTCCTATATCA
CATTATTTATTTACATATATTTCATATGCTTTCTGGCTTGGGAAGTGCAC
GGCGATTGTCAAATTTTACAATATATGGTAGAGCAATCCAATGGAATTTT
CACCTATCGCGATGCGAGCGGATCTATCCAGCTGCAGCGCTTGGAAACAG
TTCCATCCGGTGTCACTCTACTCGTGTACTGCAGTCCCTCGGTTTTCAAA
GAAACTGTTTGCCAGGACAATGGACAGTTCTCGGTCCCACTGCCCATGCG
CTGTTTAAGTCCAATGCAACCGGTGACCAAGCATATTCGCGATGGGGATT
GTGCGGGGAACCTGTATGCCGTGGGATATACCATAGATGGCAAGGATCTG
GAGCTGTATCGCACATGTTTCGATTGCGGGCAGGGAAGACTCGTGTACTC
GCAGAGCGATGTCTACTACAAAACGTTTTTTCCGAAGCGGCCATTTGTGG
AGTTTGTGGCGGATGAGATGTTCAGTCCGCAGGAGGCTGCTGCCTACATG
AAGTCCAACATCTATTTTGCGTTCAAATGCATTTACGGTGATGACCAGTC
CTACTTGCAAAATGCCAACTACTTGGTGATTAATCGAGGACATATGGTGG
CTTCCGCGGACTTCCTGTTCACGGACCAGATGGGCAGTACTTTCCGCTAT
CTGAATGTGGTGCCGCAATTCAAGTCAATTAACGATGGCAATTGGGAGAA
AATTGAGAGATGGGTGCGCAGTCAGATCCCGAAGTCGTCCTATTTCCGGG
TCAAGTCCGGCGGAATTGGCATCTTGACATTGCCAGACACCAGGGGCCTT
CCTT
BS17437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12917-PA | 963 | CG12917-RA | 1..709 | 125..833 | 3545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12917-RB | 1490 | CG12917-RB | 152..988 | 17..854 | 4165 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10137940..10138333 | 86..479 | 1970 | 100 | Plus |
2R | 25286936 | 2R | 10138392..10138759 | 480..847 | 1840 | 100 | Plus |
2R | 25286936 | 2R | 10137807..10137876 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:22:08 has no hits.
BS17437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:08 Download gff for
BS17437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12917-PA | 1..709 | 125..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:02:17 Download gff for
BS17437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12917-RA | 1..729 | 125..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 18:47:22 Download gff for
BS17437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12917-RB | 145..988 | 7..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:21:59 Download gff for
BS17437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12917-RB | 145..988 | 7..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:21:59 Download gff for
BS17437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10138392..10138765 | 480..854 | 99 | | Plus |
2R | 10137804..10137876 | 14..86 | 97 | -> | Plus |
2R | 10137941..10138333 | 87..479 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 18:47:22 Download gff for
BS17437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6025309..6025381 | 14..86 | 97 | -> | Plus |
arm_2R | 6025446..6025838 | 87..479 | 100 | -> | Plus |
arm_2R | 6025897..6026270 | 480..854 | 99 | | Plus |
BS17437.complete Sequence
1103 bp assembled on 2010-02-09
GenBank Submission: KX800956
> BS17437.complete
GAAGTTATCAGTCGACATGAAAATTGCTCCTATGGATTGCTCCTATATCA
CATTATTTATTTACATATATTTCATATGCTTTCTGGCTTGGGAAGTGCAC
GGCGATTGTCAAATTTTACAATATATGGTAGAGCAATCCAATGGAATTTT
CACCTATCGCGATGCGAGCGGATCTATCCAGCTGCAGCGCTTGGAAACAG
TTCCATCCGGTGTCACTCTACTCGTGTACTGCAGTCCCTCGGTTTTCAAA
GAAACTGTTTGCCAGGACAATGGACAGTTCTCGGTCCCACTGCCCATGCG
CTGTTTAAGTCCAATGCAACCGGTGACCAAGCATATTCGCGATGGGGATT
GTGCGGGGAACCTGTATGCCGTGGGATATACCATAGATGGCAAGGATCTG
GAGCTGTATCGCACATGTTTCGATTGCGGGCAGGGAAGACTCGTGTACTC
GCAGAGCGATGTCTACTACAAAACGTTTTTTCCGAAGCGGCCATTTGTGG
AGTTTGTGGCGGATGAGATGTTCAGTCCGCAGGAGGCTGCTGCCTACATG
AAGTCCAACATCTATTTTGCGTTCAAATGCATTTACGGTGATGACCAGTC
CTACTTGCAAAATGCCAACTACTTGGTGATTAATCGAGGACATATGGTGG
CTTCCGCGGACTTCCTGTTCACGGACCAGATGGGCAGTACTTTCCGCTAT
CTGAATGTGGTGCCGCAATTCAAGTCAATTAACGATGGCAATTGGGAGAA
AATTGAGAGATGGGTGCGCAGTCAGATCCCGAAGTCGTCCTATTTCCGGG
TCAAGTCCGGCGGAATTGGCATCTTGACATTGCCAGACACCAGGGGCTTC
CTTCAGTCGGCTTTCCTCGCCGGCTCCAAGATCCCGGTTCCCGAGTGGAC
CTACAAAGCGGTACGGGATGCCACCGGCAATGGGCTGTACGTATTCCTCA
CTTACAATAGTACCTTCCAAATGGAGAAGCCCCCGTGTCTGGCTATTTGT
TACCCAGTTAATTGTCCCATTCACCTCCCGAATAACCCGAACGATGGCTA
CACCTTCTGTTGCGATCCCAAGCGGTTCCCATATTAAAAGCTTTCTAGAC
CAT
BS17437.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12917-RB | 1071 | CG12917-PB | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12917-RB | 1490 | CG12917-RB | 152..1223 | 17..1088 | 5360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10138392..10139000 | 480..1088 | 3045 | 100 | Plus |
2R | 25286936 | 2R | 10137940..10138333 | 86..479 | 1970 | 100 | Plus |
2R | 25286936 | 2R | 10137807..10137876 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:09:10 has no hits.
BS17437.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:02 Download gff for
BS17437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12917-RB | 152..1220 | 17..1085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:13 Download gff for
BS17437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12917-RB | 152..1220 | 17..1085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:34 Download gff for
BS17437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12917-RB | 152..1220 | 17..1085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:02 Download gff for
BS17437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12917-RB | 152..1220 | 17..1085 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:02 Download gff for
BS17437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10137807..10137876 | 17..86 | 100 | -> | Plus |
2R | 10137941..10138333 | 87..479 | 100 | -> | Plus |
2R | 10138392..10138997 | 480..1085 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:13 Download gff for
BS17437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6025312..6025381 | 17..86 | 100 | -> | Plus |
arm_2R | 6025446..6025838 | 87..479 | 100 | -> | Plus |
arm_2R | 6025897..6026502 | 480..1085 | 100 | | Plus |
BS17437.pep Sequence
Translation from 16 to 1086
> BS17437.pep
MKIAPMDCSYITLFIYIYFICFLAWEVHGDCQILQYMVEQSNGIFTYRDA
SGSIQLQRLETVPSGVTLLVYCSPSVFKETVCQDNGQFSVPLPMRCLSPM
QPVTKHIRDGDCAGNLYAVGYTIDGKDLELYRTCFDCGQGRLVYSQSDVY
YKTFFPKRPFVEFVADEMFSPQEAAAYMKSNIYFAFKCIYGDDQSYLQNA
NYLVINRGHMVASADFLFTDQMGSTFRYLNVVPQFKSINDGNWEKIERWV
RSQIPKSSYFRVKSGGIGILTLPDTRGFLQSAFLAGSKIPVPEWTYKAVR
DATGNGLYVFLTYNSTFQMEKPPCLAICYPVNCPIHLPNNPNDGYTFCCD
PKRFPY*
BS17437.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12917-PB | 356 | CG12917-PB | 1..356 | 1..356 | 1944 | 100 | Plus |
CG14062-PB | 346 | CG14062-PB | 2..344 | 11..354 | 692 | 38.6 | Plus |
CG33346-PB | 364 | CG33346-PB | 61..345 | 66..354 | 467 | 35.5 | Plus |
CG9989-PA | 370 | CG9989-PA | 3..358 | 7..354 | 335 | 27.6 | Plus |
CG14120-PA | 1371 | CG14120-PA | 134..406 | 102..354 | 195 | 25.3 | Plus |