Clone Sequence Records
BS17438.3prime Sequence
899 bp (793 high quality bases) assembled on 2007-05-15
> BS17438.3prime
ATGGTCTAGAAAGCTTTTAGTACGAGTGATCCCCGTACAGTGAATTCCCT
TGATAGCGATCCAGTCCGTTCAGGATTTTCTCCCGCCGCATTCGCTGTTG
CTGCCGTCGGCGCTGCCTGTAGAGATCCAGGAGAGCATTGCAGGTGTTCC
TGTCGAGTGCGTAACCGCGCGCTCCATTGGCCCTTATGGCGACAGTGGGT
AGGCGGTGAACCGACGACTTGTACAGCAAACTGCCGGTGCCGACCTTTTG
CTTGGCCTCCACGGCGGCGGATGCGGCGCGACAGGCCGCCTCCTTCACCT
GCTCGTACTCCGACTTAGCTTGCGCCACCTGGCGGGCCAGGCGGTCACCA
CGTGCCTTCGCCGCCGCCAGCATTTGGTTCTTCTCCTCGATATCCATGTT
CGACTGGTCGATTAGGCTGTCCATTTCCGACAAAATGCCACTCGTCTGCT
GTACGAGGGCCCTGAATGTTTCGGCTTGAACCTCCGCTGCTTTGACCACG
GCACAGGAGGCCTCCACGTTCGTCTCACTGTTCTGCAGCGAGCAGCTCAC
CTGTCCGACCACCTCCTCGGCATCCCGGATCTCCCTAGCGTAGTTGTCCA
CCATTGCCTGTTTGCCCTCGAGCACCGCATCGGCGGCACGGGCAGCGGAG
ATGGCCTTTTCCGCCAGCTGCATCTTCGCCTGCCGCGATGCATCTTGAGC
GGCGGCCGCCTGTGCATCATTGGCTGCCTTGGCCACCTGGGCGGCATTCT
GGGCAATGTGGGTGGCCTTCAGCCGCGAATTGATAATCTCGTCACAGGAG
TCACAGTTGTCCCTATCTCTAATATTATTCCTGTCTTTGTCCCGATCCCT
GTTTCTATCGCAACCCCTATTTCGATCCCAATCTCGGGCCTCGATCCCG
BS17438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12985-PA | 1113 | CG12985-RA | 243..1113 | 887..17 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12985-RA | 1357 | CG12985-RA | 322..1203 | 899..17 | 4390 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17884635..17885084 | 466..17 | 2250 | 100 | Minus |
| X | 23542271 | X | 17884039..17884476 | 899..461 | 2145 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:30:35 has no hits.
BS17438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:16 Download gff for
BS17438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12985-PA | 232..1113 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:37 Download gff for
BS17438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12985-RA | 322..1203 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:41 Download gff for
BS17438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12985-RA | 322..1203 | 17..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:41 Download gff for
BS17438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17884039..17884475 | 462..899 | 99 | -> | Minus |
| X | 17884640..17885084 | 17..461 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:37 Download gff for
BS17438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17778072..17778508 | 462..899 | 99 | -> | Minus |
| arm_X | 17778673..17779117 | 17..461 | 100 | | Minus |
BS17438.5prime Sequence
683 bp (546 high quality bases) assembled on 2007-05-22
> BS17438.5prime
GAAGTTATCAGTCGACATGTATATATTTCCACCATATACCCTGCTCCTTA
TCATCCTCCGCATTGTGAGTGTCCGTGCGATGAGCTTCGACCAGCCCCAC
AACGAACACGACGCCTCCCTGGCTAGCTATTTGGACAACACCAACGATGA
CATATCTCCCCAGGGCTTCAACGGCGATGGGAATGGTAGTTCGGGGGCCA
CAGTGGTGCCATTCCCTTATCTGGGATGCACCACAAGACCGTCCTACCAA
TCTGGATGTGAAAGCATGGACGAAAGCGCTAGGGACCGAGAAAAAGATCG
CAATATTGATCGGGATCGAGGCCGAGATTGGGATCGAAATAGGGGTTGCG
ATAGAAACAGGGATCGGGACAAAGACAGGAATAATATTAGAGATAGGGAC
AACTGTGACTCCTGTGACGAGATTATCAATTCGCGGCTGAAGGCCACCCA
CATTGCCCAGAATGCCGCCCAGGTGGCCAAGGCAGCCAATGATGCACAGG
CGGCCGCCGCTCAAGATGCATCGCGGCAGGCGAAGATGCAGCTGGCGGAA
AAGGCCATCTCCGCTGCCCGTGCCGCCGATGCGGTGCTCGAGGGCAAACA
GGCAATGGTGGACAACTACGCTAGGGAGATCCGGGATGCCGAGGAGGTGG
TCGGACAGGTGAGCTGCTCCCTGCAGACAGTGA
BS17438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12985-PA | 1113 | CG12985-RA | 1..598 | 80..677 | 2965 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12985-RA | 1357 | CG12985-RA | 28..695 | 17..683 | 3300 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17883745..17884405 | 17..677 | 3290 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:40:59 has no hits.
BS17438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:06:33 Download gff for
BS17438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12985-PA | 1..604 | 80..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:56:00 Download gff for
BS17438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12985-RA | 23..694 | 12..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:15 Download gff for
BS17438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12985-RA | 23..694 | 12..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:15 Download gff for
BS17438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17883740..17884411 | 12..682 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:56:00 Download gff for
BS17438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17777773..17778444 | 12..682 | 99 | | Plus |
BS17438.complete Sequence
1208 bp assembled on 2012-04-25
GenBank Submission: KX800605
> BS17438.complete
GAAGTTATCAGTCGACATGTATATATTTCCACCATATACCCTGCTCCTTA
TCATCCTCCGCATTGTGAGTGTCCGTGCGATGAGCTTCGACCAGCCCCAC
AACGAACACGACGCCTCCCTGGCTAGCTATTTGGACAACACCAACGATGA
CATATCTCCCCAGGGCTTCAACGGCGATGGGAATGGTAGTTCGGGGGCCA
CAGTGGTGCCATTCCCTTATCTGGGATGCACCACAAGACCGTCCTACCAA
TCTGGATGTGAAAGCATGGACGAAAGCGCTAGGGACCGAGAAAAAGATCG
CAATATTGATCGGGATCGAGGCCGAGATTGGGATCGAAATAGGGGTTGCG
ATAGAAACAGGGATCGGGACAAAGACAGGAATAATATTAGAGATAGGGAC
AACTGTGACTCCTGTGACGAGATTATCAATTCGCGGCTGAAGGCCACCCA
CATTGCCCAGAATGCCGCCCAGGTGGCCAAGGCAGCCAATGATGCACAGG
CGGCCGCCGCTCAAGATGCATCGCGGCAGGCGAAGATGCAGCTGGCGGAA
AAGGCCATCTCCGCTGCCCGTGCCGCCGATGCGGTGCTCGAGGGCAAACA
GGCAATGGTGGACAACTACGCTAGGGAGATCCGGGATGCCGAGGAGGTGG
TCGGACAGGTGAGCTGCTCGCTGCAGAACAGTGAGACGAACGTGGAGGCC
TCCTGTGCCGTGGTCAAAGCAGCGGAGGTTCAAGCCGAAACATTCAGGGC
CCTCGTACAGCAGACGAGTGGCATTTTGTCGGAAATGGACAGCCTAATCG
ACCAGTCGAACATGGATATCGAGGAGAAGAACCAAATGCTGGCGGCGGCG
AAGGCACGTGGTGACCGCCTGGCCCGCCAGGTGGCGCAAGCTAAGTCGGA
GTACGAGCAGGTGAAGGAGGCGGCCTGTCGCGCCGCATCCGCCGCCGTGG
AGGCCAAGCAAAAGGTCGGCACCGGCAGTTTGCTGTACAAGTCGTCGGTT
CACCGCCTACCCACTGTCGCCATAAGGGCCAATGGAGCGCGCGGTTACGC
ACTCGACAGGAACACCTGCAATGCTCTCCTGGATCTCTACAGGCAGCGCC
GACGGCAGCAACAGCGAATGCGGCGGGAGAAAATCCTGAACGGACTGGAT
CGCTATCAAGGGAATTCACTGTACGGGGATCACTCGTACTAAAAGCTTTC
TAGACCAT
BS17438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12985-RA | 1113 | CG12985-PA | 1..1113 | 80..1192 | 5565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12985-RA | 1357 | CG12985-RA | 28..1203 | 17..1192 | 5880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:27:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17883745..17884476 | 17..748 | 3660 | 100 | Plus |
| X | 23542271 | X | 17884635..17885084 | 743..1192 | 2250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:27:01 has no hits.
BS17438.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:18:07 Download gff for
BS17438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12985-RA | 28..1201 | 17..1190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:15 Download gff for
BS17438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12985-RA | 28..1201 | 17..1190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:27 Download gff for
BS17438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12985-RA | 28..1201 | 17..1190 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:27 Download gff for
BS17438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17883745..17884475 | 17..747 | 100 | -> | Plus |
| X | 17884640..17885082 | 748..1190 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:15 Download gff for
BS17438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17777778..17778508 | 17..747 | 100 | -> | Plus |
| arm_X | 17778673..17779115 | 748..1190 | 100 | | Plus |
BS17438.pep Sequence
Translation from 16 to 1191
> BS17438.pep
MYIFPPYTLLLIILRIVSVRAMSFDQPHNEHDASLASYLDNTNDDISPQG
FNGDGNGSSGATVVPFPYLGCTTRPSYQSGCESMDESARDREKDRNIDRD
RGRDWDRNRGCDRNRDRDKDRNNIRDRDNCDSCDEIINSRLKATHIAQNA
AQVAKAANDAQAAAAQDASRQAKMQLAEKAISAARAADAVLEGKQAMVDN
YAREIRDAEEVVGQVSCSLQNSETNVEASCAVVKAAEVQAETFRALVQQT
SGILSEMDSLIDQSNMDIEEKNQMLAAAKARGDRLARQVAQAKSEYEQVK
EAACRAASAAVEAKQKVGTGSLLYKSSVHRLPTVAIRANGARGYALDRNT
CNALLDLYRQRRRQQQRMRREKILNGLDRYQGNSLYGDHSY*
BS17438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12985-PA | 370 | CG12985-PA | 1..370 | 22..391 | 1887 | 100 | Plus |
| CG14840-PA | 300 | CG14840-PA | 87..261 | 142..316 | 360 | 44 | Plus |
| CG14841-PA | 274 | CG14841-PA | 81..259 | 138..316 | 353 | 41.3 | Plus |
| CG34459-PC | 305 | CG34459-PC | 120..296 | 142..318 | 336 | 42.9 | Plus |
| CG34459-PB | 305 | CG34459-PB | 120..296 | 142..318 | 336 | 42.9 | Plus |
