Clone Sequence Records
BS17458.complete Sequence
1058 bp assembled on 2009-07-30
GenBank Submission: KX803541
> BS17458.complete
GAAGTTATCAGTCGACATGTCTTTTAATGCCAACCAAAAATTGCCCTTCC
TGGAGGGCAAAGATAGCGACTATTTTCAATCCTATTCCCGCCTGGAGACC
CACATGAACATGCTCAGGGACTCGGTGCGCATGCAGGCTTTTCGCGATGC
CATCGTCCAGGATGGAGGGCTATTCCAGGACAAGATCGTGCTGGATGTGG
GCTGTGGCACGGGTATACTATCCCTTTTCGCCGCCGAGGCTGGTGCCAGT
AAAGTTATAGCCGTTGAATGCACCGATATAGCGGATATAGCCGAGGAGAT
AATAAGGGACAATCAGAAGGAGAATGTGGTGAAGGTGGTCAAGGGATTGG
TGGAGCAAGTGGAGCTGCCCGACGGCATTGAGAAGGTGGACATCATAGTT
TCCGAATGGATGGGAAATGCTCTGTATATGGAGGCCATGATAAACTCCGT
GCTGTTTGCCCGGGATAAGTGGCTCACGCGTGGTGGGCGAATCCTGCCCA
GCACTGGAAACCTCTGGTTAATGGGGGCCTATGATCCGCATCGGCGGACT
AATCTTAACTTTTGGTGCAACGTGGAGGGCATCGACATGGGCTGTGTGAG
GAAGCCATTCTCCCAGGAGCCCTTGGTGGAGTTTGTGCCCATCCAGCAGT
TGCTCACCGACGAATGCTTCATACACTCCACCAACCTGGCTGTGGCCCGC
AACCAGCCGGTGGAGTTTCAATCGAACTTTCAATTAAAAGTCATGCGAAC
TGGAATTATCAATATGCTGGTCCTGTACTTCGATGTCTTGTTTCCGTCGG
GAAAGTCGAACAAATCCGTAAGCCTGACCACCTCGCCGCATTCGCCATGG
ACGCACTGGGAGCAGACGGTGCTCCATCTGGATGAGCCACTGTATGTGAG
GATTAGGGATCGGGTGCGCGGTGTGCTGGCCATGACGCCCACCGGACAAG
ATGGACGTGGCATGAACTTTGATCTGCACATCAGCTTCCGTGGCGAAAGA
ACGCGAGTGGAGAGCTTCAAGAGCTTCTCCTCACCAAGATGAAAGCTTTC
TAGACCAT
BS17458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art6-RA | 1026 | CG9927-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art6-RA | 1101 | CG9927-RA | 31..1057 | 17..1043 | 5135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13944698..13945327 | 1043..414 | 3150 | 100 | Minus |
3R | 32079331 | 3R | 13945385..13945782 | 414..17 | 1990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:26:47 has no hits.
BS17458.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:33 Download gff for
BS17458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 1..1025 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:50 Download gff for
BS17458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 31..1055 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:46 Download gff for
BS17458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 31..1055 | 17..1041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:46 Download gff for
BS17458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13944700..13945326 | 415..1041 | 100 | <- | Minus |
3R | 13945385..13945782 | 17..414 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:50 Download gff for
BS17458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9771107..9771504 | 17..414 | 100 | | Minus |
arm_3R | 9770422..9771048 | 415..1041 | 100 | <- | Minus |
BS17458.3prime Sequence
883 bp (819 high quality bases) assembled on 2007-05-15
> BS17458.3prime
ATGGTCTAGAAAGCTTTCATCTTGGTGAGGAGAAGCTCTTGAAGCTCTCC
ACTCGCGTTCTTTCGCCACGGAAGCTGATGTGCAGATCAAAGTTCATGCC
ACGTCCATCTTGTCCGGTGGGCGTCATGGCCAGCACACCGCGCACCCGAT
CCCTAATCCTCACATACAGTGGCTCATCCAGATGGAGCACCGTCTGCTCC
CAGTGCGTCCATGGCGAATGCGGCGAGGTGGTCAGGCTTACGGATTTGTT
CGACTTTCCCGACGGAAACAAGACATCGAAGTACAGGACCAGCATATTGA
TAATTCCAGTTCGCATGACTTTTAATTGAAAGTTCGATTGAAACTCCACC
GGCTGGTTGCGGGCCACAGCCAGGTTGGTGGAGTGTATGAAGCATTCGTC
GGTGAGCAACTGCTGGATGGGCACAAACTCCACCAAGGGCTCCTGGGAGA
ATGGCTTCCTCACACAGCCCATGTCGATGCCCTCCACGTTGCACCAAAAG
TTAAGATTAGTCCGCCGATGCGGATCATAGGCCCCCATTAACCAGAGGTT
TCCAGTGCTGGGCAGGATTCGCCCACCACGCGTGAGCCACTTATCCCGGG
CAAACAGCACGGAGTTTATCATGGCCTCCATATACAGAGCATTTCCCATC
CATTCGGAAACTATGATGTCCACCTTCTCAATGCCGTCGGGCAGCTCCAC
TTGCTCCACCAATCCCTTGACCACCTTCACCACATTCTCCTTCTGATTGT
CCCTTATTATCTCCTCGGCTATATCCGCTATATCGGTGCATTCAACGGCT
ATAACTTTACTGGCACCAGCCTCAGCGGCGAAAAGGGATAGTATACCCGT
GCCACAGCCCACATCCAGCACGATCTTGTCCTG
BS17458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9927-PA | 1026 | Art6-RA | 160..1026 | 883..17 | 4310 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art6-RA | 1101 | CG9927-RA | 190..1057 | 883..16 | 4325 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13944698..13945327 | 16..645 | 3150 | 100 | Plus |
3R | 32079331 | 3R | 13945385..13945623 | 645..883 | 1180 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:53:46 has no hits.
BS17458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:40:19 Download gff for
BS17458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9927-PA | 160..1026 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:05 Download gff for
BS17458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 190..1060 | 12..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:51 Download gff for
BS17458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 190..1060 | 12..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:51 Download gff for
BS17458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13945385..13945623 | 645..883 | 99 | | Plus |
3R | 13944695..13945326 | 12..644 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:05 Download gff for
BS17458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9770417..9771048 | 12..644 | 99 | <- | Plus |
arm_3R | 9771107..9771345 | 645..883 | 99 | | Plus |
BS17458.5prime Sequence
833 bp (734 high quality bases) assembled on 2007-05-22
> BS17458.5prime
GAAGTTATCAGTCGACATGTCTTTTAATGCCAACCAAAAATTGCCCTTCC
TGGAGGGCAAAGATAGCGACTATTTTCAATCCTATTCCCGCCTGGAGACC
CACATGAACATGCTCAGGGACTCGGTGCGCATGCAGGCTTTTCGCGATGC
CATCGTCCAGGATGGAGGGCTATTCCAGGACAAGATCGTGCTGGATGTGG
GCTGTGGCACGGGTATACTATCCCTTTTCGCCGCCGAGGCTGGTGCCAGT
AAAGTTATAGCCGTTGAATGCACCGATATAGCGGATATAGCCGAGGAGAT
AATAAGGGACAATCAGAAGGAGAATGTGGTGAAGGTGGTCAAGGGATTGG
TGGAGCAAGTGGAGCTGCCCGACGGCATTGAGAAGGTGGACATCATAGTT
TCCGAATGGATGGGAAATGCTCTGTATATGGAGGCCATGATAAACTCCGT
GCTGTTTGCCCGGGATAAGTGGCTCACGCGTGGTGGGCGAATCCTGCCCA
GCACTGGAAACCTCTGGTTAATGGGGGCCTATGATCCGCATCGGCGGACT
AATCTTAACTTTTGGTGCAACGTGGAGGGCATCGACATGGGCTGTGTGAG
GAAGCCATTCTCCCAGGAGCCCTTGGTGGAGTTTGTGCCCATCCAGCAGT
TGCTCACCGACGAATGCTTCATACACTCCACCAACCTGGCTGTGGCCCGC
AACCAGCCGGTGGAGTTTCAATCGAACTTTCAATTAAAAGTCATGCGAAC
TGGAATTATCAATATGCTGGTCCTGTACTTCGATGTCTTGTTTCCGTCGG
GAAAGTCGAACAAATCCCGTAAGCCTGACCACC
BS17458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9927-PA | 1026 | Art6-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art6-RA | 1101 | CG9927-RA | 31..846 | 17..833 | 4060 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:13:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13944909..13945327 | 833..414 | 2050 | 99.8 | Minus |
3R | 32079331 | 3R | 13945385..13945782 | 414..17 | 1990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:13:01 has no hits.
BS17458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:07:52 Download gff for
BS17458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9927-PA | 1..816 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:06:30 Download gff for
BS17458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 31..846 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:17:14 Download gff for
BS17458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 31..846 | 17..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:17:14 Download gff for
BS17458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13944909..13945326 | 415..833 | 99 | <- | Minus |
3R | 13945385..13945782 | 17..414 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:06:30 Download gff for
BS17458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9770631..9771048 | 415..833 | 99 | <- | Minus |
arm_3R | 9771107..9771504 | 17..414 | 100 | | Minus |
BS17458.pep Sequence
Translation from 16 to 1041
> BS17458.pep
MSFNANQKLPFLEGKDSDYFQSYSRLETHMNMLRDSVRMQAFRDAIVQDG
GLFQDKIVLDVGCGTGILSLFAAEAGASKVIAVECTDIADIAEEIIRDNQ
KENVVKVVKGLVEQVELPDGIEKVDIIVSEWMGNALYMEAMINSVLFARD
KWLTRGGRILPSTGNLWLMGAYDPHRRTNLNFWCNVEGIDMGCVRKPFSQ
EPLVEFVPIQQLLTDECFIHSTNLAVARNQPVEFQSNFQLKVMRTGIINM
LVLYFDVLFPSGKSNKSVSLTTSPHSPWTHWEQTVLHLDEPLYVRIRDRV
RGVLAMTPTGQDGRGMNFDLHISFRGERTRVESFKSFSSPR*
BS17458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art6-PA | 341 | CG9927-PA | 1..341 | 1..341 | 1780 | 100 | Plus |
Art2-PB | 355 | CG3675-PB | 18..346 | 4..337 | 705 | 42.8 | Plus |
Art2-PA | 355 | CG3675-PA | 18..346 | 4..337 | 705 | 42.8 | Plus |
Art1-PA | 376 | CG6554-PA | 56..373 | 19..337 | 705 | 40.6 | Plus |
Art3-PB | 474 | CG6563-PB | 163..464 | 16..322 | 521 | 38.5 | Plus |