Clone BS17458 Report

Search the DGRC for BS17458

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:174
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptArt6-RA
Protein status:BS17458.pep: full length peptide match
Sequenced Size:1058

Clone Sequence Records

BS17458.complete Sequence

1058 bp assembled on 2009-07-30

GenBank Submission: KX803541

> BS17458.complete
GAAGTTATCAGTCGACATGTCTTTTAATGCCAACCAAAAATTGCCCTTCC
TGGAGGGCAAAGATAGCGACTATTTTCAATCCTATTCCCGCCTGGAGACC
CACATGAACATGCTCAGGGACTCGGTGCGCATGCAGGCTTTTCGCGATGC
CATCGTCCAGGATGGAGGGCTATTCCAGGACAAGATCGTGCTGGATGTGG
GCTGTGGCACGGGTATACTATCCCTTTTCGCCGCCGAGGCTGGTGCCAGT
AAAGTTATAGCCGTTGAATGCACCGATATAGCGGATATAGCCGAGGAGAT
AATAAGGGACAATCAGAAGGAGAATGTGGTGAAGGTGGTCAAGGGATTGG
TGGAGCAAGTGGAGCTGCCCGACGGCATTGAGAAGGTGGACATCATAGTT
TCCGAATGGATGGGAAATGCTCTGTATATGGAGGCCATGATAAACTCCGT
GCTGTTTGCCCGGGATAAGTGGCTCACGCGTGGTGGGCGAATCCTGCCCA
GCACTGGAAACCTCTGGTTAATGGGGGCCTATGATCCGCATCGGCGGACT
AATCTTAACTTTTGGTGCAACGTGGAGGGCATCGACATGGGCTGTGTGAG
GAAGCCATTCTCCCAGGAGCCCTTGGTGGAGTTTGTGCCCATCCAGCAGT
TGCTCACCGACGAATGCTTCATACACTCCACCAACCTGGCTGTGGCCCGC
AACCAGCCGGTGGAGTTTCAATCGAACTTTCAATTAAAAGTCATGCGAAC
TGGAATTATCAATATGCTGGTCCTGTACTTCGATGTCTTGTTTCCGTCGG
GAAAGTCGAACAAATCCGTAAGCCTGACCACCTCGCCGCATTCGCCATGG
ACGCACTGGGAGCAGACGGTGCTCCATCTGGATGAGCCACTGTATGTGAG
GATTAGGGATCGGGTGCGCGGTGTGCTGGCCATGACGCCCACCGGACAAG
ATGGACGTGGCATGAACTTTGATCTGCACATCAGCTTCCGTGGCGAAAGA
ACGCGAGTGGAGAGCTTCAAGAGCTTCTCCTCACCAAGATGAAAGCTTTC
TAGACCAT

BS17458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Art6-RA 1026 CG9927-PA 1..1026 17..1042 5130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Art6-RA 1101 CG9927-RA 31..1057 17..1043 5135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13944698..13945327 1043..414 3150 100 Minus
3R 32079331 3R 13945385..13945782 414..17 1990 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:26:47 has no hits.

BS17458.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:33 Download gff for BS17458.complete
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 1..1025 17..1041 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:50 Download gff for BS17458.complete
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 31..1055 17..1041 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:46 Download gff for BS17458.complete
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 31..1055 17..1041 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:46 Download gff for BS17458.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13944700..13945326 415..1041 100 <- Minus
3R 13945385..13945782 17..414 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:50 Download gff for BS17458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9771107..9771504 17..414 100   Minus
arm_3R 9770422..9771048 415..1041 100 <- Minus

BS17458.3prime Sequence

883 bp (819 high quality bases) assembled on 2007-05-15

> BS17458.3prime
ATGGTCTAGAAAGCTTTCATCTTGGTGAGGAGAAGCTCTTGAAGCTCTCC
ACTCGCGTTCTTTCGCCACGGAAGCTGATGTGCAGATCAAAGTTCATGCC
ACGTCCATCTTGTCCGGTGGGCGTCATGGCCAGCACACCGCGCACCCGAT
CCCTAATCCTCACATACAGTGGCTCATCCAGATGGAGCACCGTCTGCTCC
CAGTGCGTCCATGGCGAATGCGGCGAGGTGGTCAGGCTTACGGATTTGTT
CGACTTTCCCGACGGAAACAAGACATCGAAGTACAGGACCAGCATATTGA
TAATTCCAGTTCGCATGACTTTTAATTGAAAGTTCGATTGAAACTCCACC
GGCTGGTTGCGGGCCACAGCCAGGTTGGTGGAGTGTATGAAGCATTCGTC
GGTGAGCAACTGCTGGATGGGCACAAACTCCACCAAGGGCTCCTGGGAGA
ATGGCTTCCTCACACAGCCCATGTCGATGCCCTCCACGTTGCACCAAAAG
TTAAGATTAGTCCGCCGATGCGGATCATAGGCCCCCATTAACCAGAGGTT
TCCAGTGCTGGGCAGGATTCGCCCACCACGCGTGAGCCACTTATCCCGGG
CAAACAGCACGGAGTTTATCATGGCCTCCATATACAGAGCATTTCCCATC
CATTCGGAAACTATGATGTCCACCTTCTCAATGCCGTCGGGCAGCTCCAC
TTGCTCCACCAATCCCTTGACCACCTTCACCACATTCTCCTTCTGATTGT
CCCTTATTATCTCCTCGGCTATATCCGCTATATCGGTGCATTCAACGGCT
ATAACTTTACTGGCACCAGCCTCAGCGGCGAAAAGGGATAGTATACCCGT
GCCACAGCCCACATCCAGCACGATCTTGTCCTG

BS17458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9927-PA 1026 Art6-RA 160..1026 883..17 4310 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Art6-RA 1101 CG9927-RA 190..1057 883..16 4325 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13944698..13945327 16..645 3150 100 Plus
3R 32079331 3R 13945385..13945623 645..883 1180 99.6 Plus
Blast to na_te.dros performed on 2015-02-10 20:53:46 has no hits.

BS17458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:40:19 Download gff for BS17458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9927-PA 160..1026 17..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:05 Download gff for BS17458.3prime
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 190..1060 12..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:51 Download gff for BS17458.3prime
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 190..1060 12..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:51 Download gff for BS17458.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13945385..13945623 645..883 99   Plus
3R 13944695..13945326 12..644 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:05 Download gff for BS17458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9770417..9771048 12..644 99 <- Plus
arm_3R 9771107..9771345 645..883 99   Plus

BS17458.5prime Sequence

833 bp (734 high quality bases) assembled on 2007-05-22

> BS17458.5prime
GAAGTTATCAGTCGACATGTCTTTTAATGCCAACCAAAAATTGCCCTTCC
TGGAGGGCAAAGATAGCGACTATTTTCAATCCTATTCCCGCCTGGAGACC
CACATGAACATGCTCAGGGACTCGGTGCGCATGCAGGCTTTTCGCGATGC
CATCGTCCAGGATGGAGGGCTATTCCAGGACAAGATCGTGCTGGATGTGG
GCTGTGGCACGGGTATACTATCCCTTTTCGCCGCCGAGGCTGGTGCCAGT
AAAGTTATAGCCGTTGAATGCACCGATATAGCGGATATAGCCGAGGAGAT
AATAAGGGACAATCAGAAGGAGAATGTGGTGAAGGTGGTCAAGGGATTGG
TGGAGCAAGTGGAGCTGCCCGACGGCATTGAGAAGGTGGACATCATAGTT
TCCGAATGGATGGGAAATGCTCTGTATATGGAGGCCATGATAAACTCCGT
GCTGTTTGCCCGGGATAAGTGGCTCACGCGTGGTGGGCGAATCCTGCCCA
GCACTGGAAACCTCTGGTTAATGGGGGCCTATGATCCGCATCGGCGGACT
AATCTTAACTTTTGGTGCAACGTGGAGGGCATCGACATGGGCTGTGTGAG
GAAGCCATTCTCCCAGGAGCCCTTGGTGGAGTTTGTGCCCATCCAGCAGT
TGCTCACCGACGAATGCTTCATACACTCCACCAACCTGGCTGTGGCCCGC
AACCAGCCGGTGGAGTTTCAATCGAACTTTCAATTAAAAGTCATGCGAAC
TGGAATTATCAATATGCTGGTCCTGTACTTCGATGTCTTGTTTCCGTCGG
GAAAGTCGAACAAATCCCGTAAGCCTGACCACC

BS17458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9927-PA 1026 Art6-RA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
Art6-RA 1101 CG9927-RA 31..846 17..833 4060 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13944909..13945327 833..414 2050 99.8 Minus
3R 32079331 3R 13945385..13945782 414..17 1990 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:13:01 has no hits.

BS17458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:07:52 Download gff for BS17458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9927-PA 1..816 17..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:06:30 Download gff for BS17458.5prime
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 31..846 17..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:17:14 Download gff for BS17458.5prime
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 31..846 17..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:17:14 Download gff for BS17458.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13944909..13945326 415..833 99 <- Minus
3R 13945385..13945782 17..414 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:06:30 Download gff for BS17458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9770631..9771048 415..833 99 <- Minus
arm_3R 9771107..9771504 17..414 100   Minus

BS17458.pep Sequence

Translation from 16 to 1041

> BS17458.pep
MSFNANQKLPFLEGKDSDYFQSYSRLETHMNMLRDSVRMQAFRDAIVQDG
GLFQDKIVLDVGCGTGILSLFAAEAGASKVIAVECTDIADIAEEIIRDNQ
KENVVKVVKGLVEQVELPDGIEKVDIIVSEWMGNALYMEAMINSVLFARD
KWLTRGGRILPSTGNLWLMGAYDPHRRTNLNFWCNVEGIDMGCVRKPFSQ
EPLVEFVPIQQLLTDECFIHSTNLAVARNQPVEFQSNFQLKVMRTGIINM
LVLYFDVLFPSGKSNKSVSLTTSPHSPWTHWEQTVLHLDEPLYVRIRDRV
RGVLAMTPTGQDGRGMNFDLHISFRGERTRVESFKSFSSPR*

BS17458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Art6-PA 341 CG9927-PA 1..341 1..341 1780 100 Plus
Art2-PB 355 CG3675-PB 18..346 4..337 705 42.8 Plus
Art2-PA 355 CG3675-PA 18..346 4..337 705 42.8 Plus
Art1-PA 376 CG6554-PA 56..373 19..337 705 40.6 Plus
Art3-PB 474 CG6563-PB 163..464 16..322 521 38.5 Plus