Clone BS17473 Report

Search the DGRC for BS17473

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:174
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG18301-RA
Protein status:BS17473.pep: full length peptide match
Sequenced Size:1301

Clone Sequence Records

BS17473.5prime Sequence

422 bp (395 high quality bases) assembled on 2007-05-15

> BS17473.5prime
GAAGTTATCAGTCGACATGTCTCTATCATCGTCTTCGAAATTTCTTATAT
GGACCTTCTTTTTGGGCCTATTCCAGCTGGAAGCCAATGCATTTTTCAAT
CCTTTTCAACTGGCTATACCTTCATCAGTTTTAGAAGATGCACACTTGAA
TACGATACAATTGATTTCCAAATATGGATACCCGGCGGAGAATTACACAG
TGCAGAGTGACGATGGCTACTTATTGGGACTCTTCAGGATCGCACGTCCT
GGAGCCCTGCCTGTGCTGCTGGTCCACGGACTAATGGACAGTTCCGATAC
CTGGGTGATGATGGGTCCTTCCAGTTCCTTAGGATACATGTTGTACGAGC
AGGGCTACGACGTCTGGATGGCCAATGTGCGGGGTAATACCTATACGAAA
CGCCATGTTCGTTACTCCGCCG

BS17473.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18301-PA 1269 CG18301-RA 1..406 17..422 2030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG18301-RA 1371 CG18301-RA 32..437 17..422 2030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10532334..10532513 154..333 900 100 Plus
2L 23513712 2L 10531852..10531989 17..154 690 100 Plus
2L 23513712 2L 10532567..10532658 331..422 460 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:18:31 has no hits.

BS17473.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:12 Download gff for BS17473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18301-PA 1..406 17..422 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:39 Download gff for BS17473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 23..437 6..422 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:19 Download gff for BS17473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 23..437 6..422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:19 Download gff for BS17473.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10532569..10532658 333..422 100   Plus
2L 10531843..10531989 6..154 97 -> Plus
2L 10532335..10532512 155..332 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:39 Download gff for BS17473.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10531843..10531989 6..154 97 -> Plus
arm_2L 10532335..10532512 155..332 100 -> Plus
arm_2L 10532569..10532658 333..422 100   Plus

BS17473.complete Sequence

1301 bp assembled on 2012-04-25

GenBank Submission: KX801002

> BS17473.complete
GAAGTTATCAGTCGACATGTCTCTATCATCGTCTTCGAAATTTCTTATAT
GGACCTTCTTTTTGGGCCTATTCCAGCTGGAAGCCAATGCATTTTTCAAT
CCTTTTCAACTGGCTATACCTTCATCAGTTTTAGAAGATGCACACTTGAA
TACGATACAATTGATTTCCAAATATGGATACCCGGCGGAGAATTACACAG
TGCAGAGTGACGATGGCTACTTATTGGGACTCTTCAGGATCGCACGTCCT
GGAGCCCTGCCTGTGCTGCTGGTCCACGGACTAATGGACAGTTCCGATAC
CTGGGTGATGATGGGTCCTTCCAGTTCCTTAGGATACATGTTGTACGAGC
AGGGCTACGACGTCTGGATGGCCAATGTGCGGGGTAATACCTATACGAAA
CGCCATGTTCGTTACTCCGCCGAAGACTCCGATTTCTGGAACTTTTCGTT
CCATGAGATGGGCATTTTCGATCTGCCTGCCATCATTGATTACATACTGA
TGCAATCTGGATTCGGTCAGTTGCACTACATTGGTCACTCCCAGGGATCA
ACTATCTTCTGGATTTTGGCCAGCGAAAGACCAGAGTACATGGAAAAGAT
CGTTATGATGCAGGCATTGGCTCCAGTGGCCTTCCTGTCCCATTGCCGTA
GTCCCATTGTGAATTTGTTGGCCTCTCAGGATACTGCAGTTGCCTCCTTC
CTAAGCGCGGCTGGCTACAATGAGTTCCTGCCCAGCAACAGTGTGATTGA
TCAGTTCAAGCGTTATGCCTGCCGGGATATCATTTCCAGCAGTGTCTGTC
AGAGTCTCTTCTTTATTCTTTTCGGTTTCAATGGCCAGCAAGTGAACCAA
ACGATGTTGCCGATCGTAGTGGGTCACACTCCGGCCGGTGCATCCATCAG
GCAGATGCACCACTACGGCCAGCTGAGGAACTCTGGGAAATTCCAGCAGT
TTGACTACGGACTGTTGAACTTCCTGCATTATGGTAGCCTGTCCCCACCG
CCTTATGAACTGGAGAAAGTCAAGGCCAAGGTGGCAATCTATTATGCCAA
AAACGATTGGATAGCTCCGCCGGAAGATGTGGACATGCTTTTCAACAGGT
TGCCCAATGTGGTGGAAAAGTATCTCGTTCCGAATGAAAACTTTAACCAC
TTCGATCTGGTCTGGGGCAGAGATGCAAAGAGAATTCTGTGGAATCGAAT
GCTTGGAGTTATGCAATCAGTTGTTCCATACTCCTCCTACAATGATGGCG
ATAGTATCACAACTGTATTTGTAAATCGATTCTAAAAGCTTTCTAGACCA
T

BS17473.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG18301-RA 1269 CG18301-PA 1..1269 17..1285 6330 99.9 Plus
Lip4-RC 1347 CG6113-PC 336..737 235..636 345 72.4 Plus
Lip4-RB 1299 CG6113-PB 294..695 235..636 345 72.4 Plus
Lip4-RC 1347 CG6113-PC 1117..1232 1010..1125 250 81 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG18301-RA 1371 CG18301-RA 32..1300 17..1285 6330 99.9 Plus
Lip4-RC 1936 CG6113-RC 554..955 235..636 345 72.4 Plus
Lip4-RB 1861 CG6113-RB 703..1104 235..636 345 72.4 Plus
Lip4-RC 1936 CG6113-RC 1335..1450 1010..1125 250 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10532986..10533576 695..1285 2940 99.8 Plus
2L 23513712 2L 10532567..10532930 331..694 1820 100 Plus
2L 23513712 2L 10532334..10532513 154..333 900 100 Plus
2L 23513712 2L 10531852..10531989 17..154 690 100 Plus
2L 23513712 2L 10530305..10530617 324..636 290 72.8 Plus
2L 23513712 2L 10531177..10531292 1010..1125 250 81 Plus
Blast to na_te.dros performed on 2014-11-28 12:17:18 has no hits.

BS17473.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:34 Download gff for BS17473.complete
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 1..1267 17..1283 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:46 Download gff for BS17473.complete
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 32..1298 17..1283 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:03 Download gff for BS17473.complete
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 32..1298 17..1283 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:11 Download gff for BS17473.complete
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 32..1298 17..1283 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:11 Download gff for BS17473.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10531852..10531989 17..154 100 -> Plus
2L 10532335..10532512 155..332 100 -> Plus
2L 10532569..10532930 333..694 100 -> Plus
2L 10532986..10533574 695..1283 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:03 Download gff for BS17473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10531852..10531989 17..154 100 -> Plus
arm_2L 10532335..10532512 155..332 100 -> Plus
arm_2L 10532569..10532930 333..694 100 -> Plus
arm_2L 10532986..10533574 695..1283 99   Plus

BS17473.pep Sequence

Translation from 16 to 1284

> BS17473.pep
MSLSSSSKFLIWTFFLGLFQLEANAFFNPFQLAIPSSVLEDAHLNTIQLI
SKYGYPAENYTVQSDDGYLLGLFRIARPGALPVLLVHGLMDSSDTWVMMG
PSSSLGYMLYEQGYDVWMANVRGNTYTKRHVRYSAEDSDFWNFSFHEMGI
FDLPAIIDYILMQSGFGQLHYIGHSQGSTIFWILASERPEYMEKIVMMQA
LAPVAFLSHCRSPIVNLLASQDTAVASFLSAAGYNEFLPSNSVIDQFKRY
ACRDIISSSVCQSLFFILFGFNGQQVNQTMLPIVVGHTPAGASIRQMHHY
GQLRNSGKFQQFDYGLLNFLHYGSLSPPPYELEKVKAKVAIYYAKNDWIA
PPEDVDMLFNRLPNVVEKYLVPNENFNHFDLVWGRDAKRILWNRMLGVMQ
SVVPYSSYNDGDSITTVFVNRF*

BS17473.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG18301-PA 422 CG18301-PA 1..422 1..422 2232 100 Plus
Lip4-PA 434 CG6113-PA 59..428 34..401 1271 60 Plus
Lip4-PC 448 CG6113-PC 73..442 34..401 1271 60 Plus
Lip4-PB 432 CG6113-PB 59..426 34..401 1257 59.7 Plus
CG31871-PA 531 CG31871-PA 67..431 34..396 987 49.1 Plus