Clone Sequence Records
BS17473.5prime Sequence
422 bp (395 high quality bases) assembled on 2007-05-15
> BS17473.5prime
GAAGTTATCAGTCGACATGTCTCTATCATCGTCTTCGAAATTTCTTATAT
GGACCTTCTTTTTGGGCCTATTCCAGCTGGAAGCCAATGCATTTTTCAAT
CCTTTTCAACTGGCTATACCTTCATCAGTTTTAGAAGATGCACACTTGAA
TACGATACAATTGATTTCCAAATATGGATACCCGGCGGAGAATTACACAG
TGCAGAGTGACGATGGCTACTTATTGGGACTCTTCAGGATCGCACGTCCT
GGAGCCCTGCCTGTGCTGCTGGTCCACGGACTAATGGACAGTTCCGATAC
CTGGGTGATGATGGGTCCTTCCAGTTCCTTAGGATACATGTTGTACGAGC
AGGGCTACGACGTCTGGATGGCCAATGTGCGGGGTAATACCTATACGAAA
CGCCATGTTCGTTACTCCGCCG
BS17473.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18301-PA | 1269 | CG18301-RA | 1..406 | 17..422 | 2030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18301-RA | 1371 | CG18301-RA | 32..437 | 17..422 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10532334..10532513 | 154..333 | 900 | 100 | Plus |
2L | 23513712 | 2L | 10531852..10531989 | 17..154 | 690 | 100 | Plus |
2L | 23513712 | 2L | 10532567..10532658 | 331..422 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:18:31 has no hits.
BS17473.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:11:12 Download gff for
BS17473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-PA | 1..406 | 17..422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:39 Download gff for
BS17473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 23..437 | 6..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:19 Download gff for
BS17473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 23..437 | 6..422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:19 Download gff for
BS17473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10532569..10532658 | 333..422 | 100 | | Plus |
2L | 10531843..10531989 | 6..154 | 97 | -> | Plus |
2L | 10532335..10532512 | 155..332 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:39 Download gff for
BS17473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10531843..10531989 | 6..154 | 97 | -> | Plus |
arm_2L | 10532335..10532512 | 155..332 | 100 | -> | Plus |
arm_2L | 10532569..10532658 | 333..422 | 100 | | Plus |
BS17473.complete Sequence
1301 bp assembled on 2012-04-25
GenBank Submission: KX801002
> BS17473.complete
GAAGTTATCAGTCGACATGTCTCTATCATCGTCTTCGAAATTTCTTATAT
GGACCTTCTTTTTGGGCCTATTCCAGCTGGAAGCCAATGCATTTTTCAAT
CCTTTTCAACTGGCTATACCTTCATCAGTTTTAGAAGATGCACACTTGAA
TACGATACAATTGATTTCCAAATATGGATACCCGGCGGAGAATTACACAG
TGCAGAGTGACGATGGCTACTTATTGGGACTCTTCAGGATCGCACGTCCT
GGAGCCCTGCCTGTGCTGCTGGTCCACGGACTAATGGACAGTTCCGATAC
CTGGGTGATGATGGGTCCTTCCAGTTCCTTAGGATACATGTTGTACGAGC
AGGGCTACGACGTCTGGATGGCCAATGTGCGGGGTAATACCTATACGAAA
CGCCATGTTCGTTACTCCGCCGAAGACTCCGATTTCTGGAACTTTTCGTT
CCATGAGATGGGCATTTTCGATCTGCCTGCCATCATTGATTACATACTGA
TGCAATCTGGATTCGGTCAGTTGCACTACATTGGTCACTCCCAGGGATCA
ACTATCTTCTGGATTTTGGCCAGCGAAAGACCAGAGTACATGGAAAAGAT
CGTTATGATGCAGGCATTGGCTCCAGTGGCCTTCCTGTCCCATTGCCGTA
GTCCCATTGTGAATTTGTTGGCCTCTCAGGATACTGCAGTTGCCTCCTTC
CTAAGCGCGGCTGGCTACAATGAGTTCCTGCCCAGCAACAGTGTGATTGA
TCAGTTCAAGCGTTATGCCTGCCGGGATATCATTTCCAGCAGTGTCTGTC
AGAGTCTCTTCTTTATTCTTTTCGGTTTCAATGGCCAGCAAGTGAACCAA
ACGATGTTGCCGATCGTAGTGGGTCACACTCCGGCCGGTGCATCCATCAG
GCAGATGCACCACTACGGCCAGCTGAGGAACTCTGGGAAATTCCAGCAGT
TTGACTACGGACTGTTGAACTTCCTGCATTATGGTAGCCTGTCCCCACCG
CCTTATGAACTGGAGAAAGTCAAGGCCAAGGTGGCAATCTATTATGCCAA
AAACGATTGGATAGCTCCGCCGGAAGATGTGGACATGCTTTTCAACAGGT
TGCCCAATGTGGTGGAAAAGTATCTCGTTCCGAATGAAAACTTTAACCAC
TTCGATCTGGTCTGGGGCAGAGATGCAAAGAGAATTCTGTGGAATCGAAT
GCTTGGAGTTATGCAATCAGTTGTTCCATACTCCTCCTACAATGATGGCG
ATAGTATCACAACTGTATTTGTAAATCGATTCTAAAAGCTTTCTAGACCA
T
BS17473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18301-RA | 1269 | CG18301-PA | 1..1269 | 17..1285 | 6330 | 99.9 | Plus |
Lip4-RC | 1347 | CG6113-PC | 336..737 | 235..636 | 345 | 72.4 | Plus |
Lip4-RB | 1299 | CG6113-PB | 294..695 | 235..636 | 345 | 72.4 | Plus |
Lip4-RC | 1347 | CG6113-PC | 1117..1232 | 1010..1125 | 250 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:17:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18301-RA | 1371 | CG18301-RA | 32..1300 | 17..1285 | 6330 | 99.9 | Plus |
Lip4-RC | 1936 | CG6113-RC | 554..955 | 235..636 | 345 | 72.4 | Plus |
Lip4-RB | 1861 | CG6113-RB | 703..1104 | 235..636 | 345 | 72.4 | Plus |
Lip4-RC | 1936 | CG6113-RC | 1335..1450 | 1010..1125 | 250 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10532986..10533576 | 695..1285 | 2940 | 99.8 | Plus |
2L | 23513712 | 2L | 10532567..10532930 | 331..694 | 1820 | 100 | Plus |
2L | 23513712 | 2L | 10532334..10532513 | 154..333 | 900 | 100 | Plus |
2L | 23513712 | 2L | 10531852..10531989 | 17..154 | 690 | 100 | Plus |
2L | 23513712 | 2L | 10530305..10530617 | 324..636 | 290 | 72.8 | Plus |
2L | 23513712 | 2L | 10531177..10531292 | 1010..1125 | 250 | 81 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:17:18 has no hits.
BS17473.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:34 Download gff for
BS17473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 1..1267 | 17..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:46 Download gff for
BS17473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 32..1298 | 17..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:03 Download gff for
BS17473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 32..1298 | 17..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:11 Download gff for
BS17473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 32..1298 | 17..1283 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:11 Download gff for
BS17473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10531852..10531989 | 17..154 | 100 | -> | Plus |
2L | 10532335..10532512 | 155..332 | 100 | -> | Plus |
2L | 10532569..10532930 | 333..694 | 100 | -> | Plus |
2L | 10532986..10533574 | 695..1283 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:03 Download gff for
BS17473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10531852..10531989 | 17..154 | 100 | -> | Plus |
arm_2L | 10532335..10532512 | 155..332 | 100 | -> | Plus |
arm_2L | 10532569..10532930 | 333..694 | 100 | -> | Plus |
arm_2L | 10532986..10533574 | 695..1283 | 99 | | Plus |
BS17473.pep Sequence
Translation from 16 to 1284
> BS17473.pep
MSLSSSSKFLIWTFFLGLFQLEANAFFNPFQLAIPSSVLEDAHLNTIQLI
SKYGYPAENYTVQSDDGYLLGLFRIARPGALPVLLVHGLMDSSDTWVMMG
PSSSLGYMLYEQGYDVWMANVRGNTYTKRHVRYSAEDSDFWNFSFHEMGI
FDLPAIIDYILMQSGFGQLHYIGHSQGSTIFWILASERPEYMEKIVMMQA
LAPVAFLSHCRSPIVNLLASQDTAVASFLSAAGYNEFLPSNSVIDQFKRY
ACRDIISSSVCQSLFFILFGFNGQQVNQTMLPIVVGHTPAGASIRQMHHY
GQLRNSGKFQQFDYGLLNFLHYGSLSPPPYELEKVKAKVAIYYAKNDWIA
PPEDVDMLFNRLPNVVEKYLVPNENFNHFDLVWGRDAKRILWNRMLGVMQ
SVVPYSSYNDGDSITTVFVNRF*
BS17473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18301-PA | 422 | CG18301-PA | 1..422 | 1..422 | 2232 | 100 | Plus |
Lip4-PA | 434 | CG6113-PA | 59..428 | 34..401 | 1271 | 60 | Plus |
Lip4-PC | 448 | CG6113-PC | 73..442 | 34..401 | 1271 | 60 | Plus |
Lip4-PB | 432 | CG6113-PB | 59..426 | 34..401 | 1257 | 59.7 | Plus |
CG31871-PA | 531 | CG31871-PA | 67..431 | 34..396 | 987 | 49.1 | Plus |